Lag0000630 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000630
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionhydroxyproline-rich glycoprotein family protein
Locationchr4: 11754167 .. 11754688 (-)
RNA-Seq ExpressionLag0000630
SyntenyLag0000630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATTGTGACTGAAGCAACCATTCCCAAAACCCCAATTCAGCCGGAATCTACAAATTCCGATCAGCAACCTGAATTTTCCGGTAGCCCAGATGGAGAGAAGAAGAGCAGAGGCCAAAAGCAATCAAAATCGGAGTGTAAAACGGCAAGCCCAGATGAGAAAACAGAGGAAAAACAGAGGATTTTGGTGCCGAAGAGCCCCAATGTGGCTGCCAAAGTTAAACAAAGGGCGAAATTTGGAGGCATTGAGTTTCCTAAAAATGGAACACCACATCGCCTGAAAGTGCCCAATGCATTCAAATTCCCTGAAAGGTATACAAGTCCCACTGATTTGATGATGTCTCCTATCAGCAAAGGCCTCCTTGCCAGAACCAGGAAAGGGGCTGTCCCTTCCAAGGTTAGGTTAACTTTAATCACAAACAAAAGAAATTTCAATGAAGGTTTTACTTTCTTTGTTTAAAAGTTTTTGTTTTTTCTCCTTTTGTTGATGCAGATGCATGAGTTGAGTCTTCAGAGCTGA

mRNA sequence

ATGGAGATTGTGACTGAAGCAACCATTCCCAAAACCCCAATTCAGCCGGAATCTACAAATTCCGATCAGCAACCTGAATTTTCCGGTAGCCCAGATGGAGAGAAGAAGAGCAGAGGCCAAAAGCAATCAAAATCGGAGTGTAAAACGGCAAGCCCAGATGAGAAAACAGAGGAAAAACAGAGGATTTTGGTGCCGAAGAGCCCCAATGTGGCTGCCAAAGTTAAACAAAGGGCGAAATTTGGAGGCATTGAGTTTCCTAAAAATGGAACACCACATCGCCTGAAAGTGCCCAATGCATTCAAATTCCCTGAAAGGTATACAAGTCCCACTGATTTGATGATGTCTCCTATCAGCAAAGGCCTCCTTGCCAGAACCAGGAAAGGGGCTGTCCCTTCCAAGATGCATGAGTTGAGTCTTCAGAGCTGA

Coding sequence (CDS)

ATGGAGATTGTGACTGAAGCAACCATTCCCAAAACCCCAATTCAGCCGGAATCTACAAATTCCGATCAGCAACCTGAATTTTCCGGTAGCCCAGATGGAGAGAAGAAGAGCAGAGGCCAAAAGCAATCAAAATCGGAGTGTAAAACGGCAAGCCCAGATGAGAAAACAGAGGAAAAACAGAGGATTTTGGTGCCGAAGAGCCCCAATGTGGCTGCCAAAGTTAAACAAAGGGCGAAATTTGGAGGCATTGAGTTTCCTAAAAATGGAACACCACATCGCCTGAAAGTGCCCAATGCATTCAAATTCCCTGAAAGGTATACAAGTCCCACTGATTTGATGATGTCTCCTATCAGCAAAGGCCTCCTTGCCAGAACCAGGAAAGGGGCTGTCCCTTCCAAGATGCATGAGTTGAGTCTTCAGAGCTGA

Protein sequence

MEIVTEATIPKTPIQPESTNSDQQPEFSGSPDGEKKSRGQKQSKSECKTASPDEKTEEKQRILVPKSPNVAAKVKQRAKFGGIEFPKNGTPHRLKVPNAFKFPERYTSPTDLMMSPISKGLLARTRKGAVPSKMHELSLQS
Homology
BLAST of Lag0000630 vs. NCBI nr
Match: XP_022998048.1 (uncharacterized protein LOC111492813 [Cucurbita maxima])

HSP 1 Score: 169.5 bits (428), Expect = 2.1e-38
Identity = 104/170 (61.18%), Postives = 115/170 (67.65%), Query Frame = 0

Query: 1   MEIVTEATIPKTPIQPESTNSDQQPEFS----------------GSPDGEKKSRGQKQ-- 60
           MEI TE  IP TP Q +  +S+QQ E S                G+PD EKK + Q Q  
Sbjct: 1   MEIATEPAIPTTPTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKAQNQME 60

Query: 61  -SKSECKTASPDEKTEEKQRIL------------VPKSPNVAAKVKQRAKFGGIEFPKNG 120
            SK ECKT +PDEKTEEKQRIL            VPKSPNVA +VKQR   GGI FPKNG
Sbjct: 61  SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEVKQR---GGIAFPKNG 120

Query: 121 TPHRLKVPNAFKFPERYTSPTDLMMSPISKGLLARTRKGAVPSKMHELSL 140
           TP+RLKVP AFK+ ERYTSPTDLMMSPI+KGLLARTRKGAVPSKMHEL +
Sbjct: 121 TPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRI 167

BLAST of Lag0000630 vs. NCBI nr
Match: XP_022948389.1 (uncharacterized protein LOC111452080 [Cucurbita moschata])

HSP 1 Score: 169.5 bits (428), Expect = 2.1e-38
Identity = 104/170 (61.18%), Postives = 115/170 (67.65%), Query Frame = 0

Query: 1   MEIVTEATIPKTPIQPESTNSDQQPEFS----------------GSPDGEKKSRGQKQ-- 60
           MEI TE TIP TP Q +  +S+QQ E S                G+PD EKK +GQ Q  
Sbjct: 1   MEIATEPTIPTTPTQSKPVDSEQQSETSGAGETTATRELETPINGTPDREKKGKGQDQME 60

Query: 61  -SKSECKTASPDEKTEEKQRIL------------VPKSPNVAAKVKQRAKFGGIEFPKNG 120
            SK ECKT +PDEKTEEKQRIL            VPKSPNVA + KQR   GGI  PKNG
Sbjct: 61  SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQR---GGIALPKNG 120

Query: 121 TPHRLKVPNAFKFPERYTSPTDLMMSPISKGLLARTRKGAVPSKMHELSL 140
           TP+RLKVP AFK+ ERYTSPTDLMMSPI+KGLLARTRKGAVPSKMHEL +
Sbjct: 121 TPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRI 167

BLAST of Lag0000630 vs. NCBI nr
Match: XP_023525350.1 (uncharacterized protein LOC111788976 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167.5 bits (423), Expect = 8.0e-38
Identity = 102/170 (60.00%), Postives = 115/170 (67.65%), Query Frame = 0

Query: 1   MEIVTEATIPKTPIQPESTNSDQQPEFS----------------GSPDGEKKSRGQKQ-- 60
           MEI TE TIP TP Q +  +S+QQ E S                G+PD EKK +G+ Q  
Sbjct: 1   MEIATEPTIPTTPTQSKPVDSEQQSETSGAGETTATPELETPIDGTPDREKKGKGENQKE 60

Query: 61  -SKSECKTASPDEKTEEKQRIL------------VPKSPNVAAKVKQRAKFGGIEFPKNG 120
            SK ECKT +PDEKTEEKQRIL            VPKSPNVA + KQR   GGI  P+NG
Sbjct: 61  SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQR---GGIALPRNG 120

Query: 121 TPHRLKVPNAFKFPERYTSPTDLMMSPISKGLLARTRKGAVPSKMHELSL 140
           TP+RLKVP AFK+ ERYTSPTDLMMSPI+KGLLARTRKGAVPSKMHEL +
Sbjct: 121 TPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRI 167

BLAST of Lag0000630 vs. NCBI nr
Match: KAG6607098.1 (hypothetical protein SDJN03_00440, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036787.1 hypothetical protein SDJN02_00407 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.4 bits (420), Expect = 1.8e-37
Identity = 103/170 (60.59%), Postives = 114/170 (67.06%), Query Frame = 0

Query: 1   MEIVTEATIPKTPIQPESTNSDQQPEFS----------------GSPDGEKKSRGQKQ-- 60
           MEI TE TIP T  Q +  +S+QQ E S                G+PD EKK +GQ Q  
Sbjct: 1   MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQME 60

Query: 61  -SKSECKTASPDEKTEEKQRIL------------VPKSPNVAAKVKQRAKFGGIEFPKNG 120
            SK ECKT +PDEKTEEKQRIL            VPKSPNVA + KQR   GGI  PKNG
Sbjct: 61  SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQR---GGIALPKNG 120

Query: 121 TPHRLKVPNAFKFPERYTSPTDLMMSPISKGLLARTRKGAVPSKMHELSL 140
           TP+RLKVP AFK+ ERYTSPTDLMMSPI+KGLLARTRKGAVPSKMHEL +
Sbjct: 121 TPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRI 167

BLAST of Lag0000630 vs. NCBI nr
Match: XP_022155023.1 (uncharacterized protein LOC111022170 [Momordica charantia])

HSP 1 Score: 144.4 bits (363), Expect = 7.3e-31
Identity = 101/196 (51.53%), Postives = 116/196 (59.18%), Query Frame = 0

Query: 1   MEIVTEATIPKTPIQPESTN-------SDQQPEFSGSPDGE------------------- 60
           MEI  +A+IP +P Q E T+       SDQQPE SG+ DG+                   
Sbjct: 1   MEIPIQASIPSSPNQSECTDFESKLTISDQQPEISGAGDGDGLLKHPESPAQIGKLTPAG 60

Query: 61  -------------KKSRGQKQSK---SECKTASPDEKTE---EKQRIL-----------V 120
                        +K+R Q QS+   SE KTA+P EK E   EK+RIL           V
Sbjct: 61  ETPATPEFETPKKEKARSQNQSEKSNSEMKTATPVEKAEDETEKKRILVPKNGSMDRLKV 120

Query: 121 PKSPNVAAKVKQRAKFGGIEFPKNGTPHRLKVPNAFKFPERYTSPTDLMMSPISKGLLAR 141
           PKSPN A KV    KF GIE PKNGTP+RLKVP AFK+PERY SPTDLMMSPISKGLLAR
Sbjct: 121 PKSPNPAGKV----KFSGIELPKNGTPNRLKVPKAFKYPERYMSPTDLMMSPISKGLLAR 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022998048.12.1e-3861.18uncharacterized protein LOC111492813 [Cucurbita maxima][more]
XP_022948389.12.1e-3861.18uncharacterized protein LOC111452080 [Cucurbita moschata][more]
XP_023525350.18.0e-3860.00uncharacterized protein LOC111788976 [Cucurbita pepo subsp. pepo][more]
KAG6607098.11.8e-3760.59hypothetical protein SDJN03_00440, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022155023.17.3e-3151.53uncharacterized protein LOC111022170 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..62
NoneNo IPR availablePANTHERPTHR36747HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEINcoord: 45..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000630.1Lag0000630.1mRNA