Lag0000594 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000594
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr4: 10942559 .. 10943119 (+)
RNA-Seq ExpressionLag0000594
SyntenyLag0000594
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGATTTCAGGGAGGCTATAGACACGTGTGGTTTAATCGATCCTGGCTTTACTGGCCCAGAGTTTACTTGGTGTAACAACCATGTGAACAGTGAAATTATATGGGAAAGGTTGGATCGTTTCTTAATGAACACTGTGATGCAAGAGAAGTGTAGTTTCTTTAATGTGCAACACCTCGCTTTTCAAGCTTCGGACCATCGACCAATTATAGCAGAATGGGATAGAGATTACCAAGACAAAAATCAGATGGGTCTGAAACGTTTGCTAAGATTTGAGGAGTCATGGACCAAATGCGAAGAATGTAAAGATATTATTTCGCAGGCCTGGAGGAGTCATAATACTCAAGATGCTCCCTCAGTCCAAGAAAAGATAAAGATGTGCTTAATTGACCTCAAAAAATGGAGTTGTGATAGGTACAGAGGTTCTTTGAGAGGGGCAATTTCAAGAGTAGAGAAAGAGCTTCAAGAGTGGGTGTGCAGAAATGATGTTCAGAGTATGGGGTTTGTGAAAATGAAGGAAAAGGAATTAGCACAACTGTTGGAGGATGATGAGATCTAG

mRNA sequence

ATGTCTGATTTCAGGGAGGCTATAGACACGTGTGGTTTAATCGATCCTGGCTTTACTGGCCCAGAGTTTACTTGGTGTAACAACCATGTGAACAGTGAAATTATATGGGAAAGGTTGGATCGTTTCTTAATGAACACTGTGATGCAAGAGAAGTGTAGTTTCTTTAATGTGCAACACCTCGCTTTTCAAGCTTCGGACCATCGACCAATTATAGCAGAATGGGATAGAGATTACCAAGACAAAAATCAGATGGGTCTGAAACGTTTGCTAAGATTTGAGGAGTCATGGACCAAATGCGAAGAATGTAAAGATATTATTTCGCAGGCCTGGAGGAGTCATAATACTCAAGATGCTCCCTCAGTCCAAGAAAAGATAAAGATGTGCTTAATTGACCTCAAAAAATGGAGTTGTGATAGGTACAGAGGTTCTTTGAGAGGGGCAATTTCAAGAGTAGAGAAAGAGCTTCAAGAGTGGGTGTGCAGAAATGATGTTCAGAGTATGGGGTTTGTGAAAATGAAGGAAAAGGAATTAGCACAACTGTTGGAGGATGATGAGATCTAG

Coding sequence (CDS)

ATGTCTGATTTCAGGGAGGCTATAGACACGTGTGGTTTAATCGATCCTGGCTTTACTGGCCCAGAGTTTACTTGGTGTAACAACCATGTGAACAGTGAAATTATATGGGAAAGGTTGGATCGTTTCTTAATGAACACTGTGATGCAAGAGAAGTGTAGTTTCTTTAATGTGCAACACCTCGCTTTTCAAGCTTCGGACCATCGACCAATTATAGCAGAATGGGATAGAGATTACCAAGACAAAAATCAGATGGGTCTGAAACGTTTGCTAAGATTTGAGGAGTCATGGACCAAATGCGAAGAATGTAAAGATATTATTTCGCAGGCCTGGAGGAGTCATAATACTCAAGATGCTCCCTCAGTCCAAGAAAAGATAAAGATGTGCTTAATTGACCTCAAAAAATGGAGTTGTGATAGGTACAGAGGTTCTTTGAGAGGGGCAATTTCAAGAGTAGAGAAAGAGCTTCAAGAGTGGGTGTGCAGAAATGATGTTCAGAGTATGGGGTTTGTGAAAATGAAGGAAAAGGAATTAGCACAACTGTTGGAGGATGATGAGATCTAG

Protein sequence

MSDFREAIDTCGLIDPGFTGPEFTWCNNHVNSEIIWERLDRFLMNTVMQEKCSFFNVQHLAFQASDHRPIIAEWDRDYQDKNQMGLKRLLRFEESWTKCEECKDIISQAWRSHNTQDAPSVQEKIKMCLIDLKKWSCDRYRGSLRGAISRVEKELQEWVCRNDVQSMGFVKMKEKELAQLLEDDEI
Homology
BLAST of Lag0000594 vs. NCBI nr
Match: XP_022155286.1 (uncharacterized protein LOC111022423 [Momordica charantia])

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-32
Identity = 77/186 (41.40%), Postives = 106/186 (56.99%), Query Frame = 0

Query: 1   MSDFREAIDTCGLIDPGFTGPEFTWCNNHVNSEIIWERLDRFLMNTVMQEKCSFFNVQHL 60
           M +F++ +D CGL+DPGF G  FTWC+ H   + IWERLDRFL+NT + +      ++HL
Sbjct: 67  MQNFKDTLDLCGLLDPGFVGDIFTWCDGHKYRQPIWERLDRFLINTAIFQIQETLEIRHL 126

Query: 61  AFQASDHRPIIAEW-DRDYQDKNQMGLKRLLRFEESWTKCEECKDIISQAWRSHNTQDAP 120
            F ASDHRPI+AEW         +   +R  RFEE W   +ECK+I+ + W         
Sbjct: 127 EFLASDHRPILAEWLGVGEATVGRRKGRRPHRFEEQWFSFQECKEIVRRVWAVQGDLCGT 186

Query: 121 SVQEKIKMCLIDLKKWSCDRYRGSLRGAISRVEKELQEWVCRNDVQSMGFVKMKEKELAQ 180
             Q KI  CL +L KW+  R  GSLRGAI R E E+Q  V          +   +++L +
Sbjct: 187 VFQGKINSCLEELIKWNVGRLGGSLRGAIMRKEVEIQRMVKDGATGWRDNLWEAKRDLEK 246

Query: 181 LLEDDE 186
           LLE++E
Sbjct: 247 LLEEEE 252

BLAST of Lag0000594 vs. NCBI nr
Match: XP_042983236.1 (uncharacterized protein LOC122312642 [Carya illinoinensis])

HSP 1 Score: 112.5 bits (280), Expect = 4.0e-21
Identity = 66/190 (34.74%), Postives = 99/190 (52.11%), Query Frame = 0

Query: 1   MSDFREAIDTCGLIDPGFTGPEFTWCNNHVNSEIIWERLDRFLMNTVMQEKCSFFNVQHL 60
           M  FR A+D CGL D GF G +FTW NN   ++   ERLDR L N+ +    S+ ++  L
Sbjct: 69  MQKFRGAVDDCGLSDLGFRGNKFTWSNNRETNQFTKERLDRGLGNSQLSLMFSYIDIYTL 128

Query: 61  AFQASDHRPIIAEWDRDYQDKNQMGLKRLLRFEESWTKCEECKDIISQAWRSHNTQDAP- 120
           + Q+SDH P+      D    N    + L R+E SW K EEC+ I+ + WRS  T+ +  
Sbjct: 129 SAQSSDHSPLFVSMSNDL--NNCFQKRHLFRYECSWDKKEECRKIVEEEWRSKATRGSKL 188

Query: 121 -SVQEKIKMCLIDLKKWSCDRYRGSLRGAISRVE--KELQEWVCRNDVQSMGFVKMKEKE 180
            SV   + +C   L +W    Y+ +    +  ++    LQE    N  QS   +K K+K 
Sbjct: 189 HSVLGGLTLCRKALTRWKKICYKNNKELVLEHLQVISRLQE---ENMGQSGAVIKEKQKA 248

Query: 181 LAQLLEDDEI 187
           + QLL +D++
Sbjct: 249 VDQLLAEDDL 253

BLAST of Lag0000594 vs. NCBI nr
Match: XP_030479239.1 (uncharacterized protein LOC115696480 [Cannabis sativa])

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-20
Identity = 64/189 (33.86%), Postives = 100/189 (52.91%), Query Frame = 0

Query: 1   MSDFREAIDTCGLIDPGFTGPEFTWCNNHVNSEIIWERLDRFLMNTVMQEKCSFFNVQHL 60
           M DFR++ID CG+    +TG +FTW N + N  ++ ERLDR  +N   +E  S   + HL
Sbjct: 159 MEDFRKSIDDCGVTPLDYTGNKFTWSNKNYNGLLVKERLDRGFINGKWKEFFSDNRIHHL 218

Query: 61  AFQASDHRPIIAEWDRDYQDKNQMGLKRLLRFEESWTKCEECKDIISQAWRSHNTQD-AP 120
            + +SDHR I        QD+     +   RFE+ W K EEC+++I   W+S  T D  P
Sbjct: 219 DYYSSDHRAIALNISMLTQDQPDFRPRNRFRFEQFWLKDEECRNLIVNNWKSGLTTDPLP 278

Query: 121 SVQEKIKMCLIDLKKWSCDRYRGSLRGAISRVEKELQEWVCRNDVQSMGFVKM--KEKEL 180
           S+ + I  C   L+ W  ++Y G ++  I++ +K+  E    +   +    +M   EK L
Sbjct: 279 SLLQNINSCSTALQTWHNNKY-GQMKHDINKAQKKAAEMHNLSVFSTDQHTQMVNAEKVL 338

Query: 181 AQLLEDDEI 187
             LLE +E+
Sbjct: 339 DDLLEKEEL 346

BLAST of Lag0000594 vs. NCBI nr
Match: XP_030969676.1 (uncharacterized protein LOC115989953 [Quercus lobata])

HSP 1 Score: 109.0 bits (271), Expect = 4.5e-20
Identity = 62/161 (38.51%), Postives = 87/161 (54.04%), Query Frame = 0

Query: 1   MSDFREAIDTCGLIDPGFTGPEFTWCNNHVNSEIIWERLDRFLMNTVMQEKCSFFNVQHL 60
           M  FR+ +D CG +D GF+GPEFTW   H   E+IWERLD  + N     +     ++HL
Sbjct: 158 MQSFRDILDLCGFVDLGFSGPEFTWHGRH-RGELIWERLDPGVANYEWLARFPTGRIKHL 217

Query: 61  AFQASDHRPIIAEWDRDYQDKNQMGLKRLLRFEESWTKCEECKDIISQAWRSHNTQDAPS 120
               SDHRPI+   D +   +NQ   ++  RFE  W    ECK ++S AW + N +  P 
Sbjct: 218 HCFTSDHRPILLSLDSN--GENQRWKRKPFRFEAMWLSDPECKGVVSTAW-ACNPEGTPM 277

Query: 121 V--QEKIKMCLIDLKKWSCDRYRGSLRGAISRVEKELQEWV 160
           V   +KIK C   LK W+ D + GS+   I + ++ L  WV
Sbjct: 278 VVATKKIKKCKKMLKTWNRDHF-GSVLQKIKKTKELL--WV 311

BLAST of Lag0000594 vs. NCBI nr
Match: TXG57064.1 (hypothetical protein EZV62_018377 [Acer yangbiense])

HSP 1 Score: 108.6 bits (270), Expect = 5.8e-20
Identity = 57/166 (34.34%), Postives = 87/166 (52.41%), Query Frame = 0

Query: 4   FREAIDTCGLIDPGFTGPEFTWCNNHVNSEIIWERLDRFLMNTVMQEKCSFFNVQHLAFQ 63
           FRE ID C L+D GF GP+ TW N       + ER+DR L +T   +      VQHL + 
Sbjct: 151 FREVIDDCNLVDLGFEGPKMTWNNRRDGDNNVQERIDRMLADTAWIDLFPGARVQHLGYN 210

Query: 64  ASDHRPIIAEWDRDYQDKNQMGLKRLLRFEESWTKCEECKDIISQAWRSHNTQDAP---- 123
           +SDHRP++  +   +Q   +   ++  +FE  W K EEC  +I +AW   N  + P    
Sbjct: 211 SSDHRPLLLSFADGFQGARKTN-RKPFKFEHFWLKEEECSKVIREAW---NLLEVPHSLG 270

Query: 124 SVQEKIKMCLIDLKKWSCDRYRGSLRGAISRVEKELQEWVCRNDVQ 166
            ++ K+  C   L  WS  ++ GSLR  I   +KE++E + R  ++
Sbjct: 271 DLERKLMFCAGKLSFWSLAKF-GSLRKRIEEKQKEVEELLSRAQIK 311

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155286.11.3e-3241.40uncharacterized protein LOC111022423 [Momordica charantia][more]
XP_042983236.14.0e-2134.74uncharacterized protein LOC122312642 [Carya illinoinensis][more]
XP_030479239.11.5e-2033.86uncharacterized protein LOC115696480 [Cannabis sativa][more]
XP_030969676.14.5e-2038.51uncharacterized protein LOC115989953 [Quercus lobata][more]
TXG57064.15.8e-2034.34hypothetical protein EZV62_018377 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 1..74
e-value: 4.6E-8
score: 35.1
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 2..74
NoneNo IPR availablePANTHERPTHR33710:SF35SUBFAMILY NOT NAMEDcoord: 3..138
NoneNo IPR availablePANTHERPTHR33710BNAC02G09200D PROTEINcoord: 3..138

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000594.1Lag0000594.1mRNA