Lag0000558 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000558
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr4: 9910983 .. 9911405 (+)
RNA-Seq ExpressionLag0000558
SyntenyLag0000558
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTCAAGACTTCTTCAATGGTCGTTGTCATGAACAAGTCTTACATTAGTTCTACTGCCCATTGTTGCTTCAATGAACTAACGTTGCAAGAAGATAAAGCTTTTATCGTTGCAGGCCAAGAAAAAACCTTGCAAGGGGTATATACTAATGACAAGTTTCTTGTTAAATATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGGACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCCATTGAAGAAAGAGATTCTCAAATTGAGCACCTAAAGATTCAAATTGAGAACCAACATATCCTAGAATCAAGTCAAACCCAAGTCGTAAAAAATCACAACAAAGGAAAGACTATAGTGCAAGATGATCAACCATAG

mRNA sequence

ATGTTGTTCAAGACTTCTTCAATGGTCGTTGTCATGAACAAGTCTTACATTAGTTCTACTGCCCATTGTTGCTTCAATGAACTAACGTTGCAAGAAGATAAAGCTTTTATCGTTGCAGGCCAAGAAAAAACCTTGCAAGGGGTATATACTAATGACAAGTTTCTTGTTAAATATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGGACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCCATTGAAGAAAGAGATTCTCAAATTGAGCACCTAAAGATTCAAATTGAGAACCAACATATCCTAGAATCAAGTCAAACCCAAGTCGTAAAAAATCACAACAAAGGAAAGACTATAGTGCAAGATGATCAACCATAG

Coding sequence (CDS)

ATGTTGTTCAAGACTTCTTCAATGGTCGTTGTCATGAACAAGTCTTACATTAGTTCTACTGCCCATTGTTGCTTCAATGAACTAACGTTGCAAGAAGATAAAGCTTTTATCGTTGCAGGCCAAGAAAAAACCTTGCAAGGGGTATATACTAATGACAAGTTTCTTGTTAAATATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGGACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCCATTGAAGAAAGAGATTCTCAAATTGAGCACCTAAAGATTCAAATTGAGAACCAACATATCCTAGAATCAAGTCAAACCCAAGTCGTAAAAAATCACAACAAAGGAAAGACTATAGTGCAAGATGATCAACCATAG

Protein sequence

MLFKTSSMVVVMNKSYISSTAHCCFNELTLQEDKAFIVAGQEKTLQGVYTNDKFLVKYNPLFEPDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDDQP
Homology
[Close]
BLAST of Lag0000558 vs. NCBI nr
Match: KAA0051994.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-10
Identity = 39/77 (50.65%), Postives = 58/77 (75.32%), Query Frame = 0 

Query: 64  PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQ 123
           P  +I++VM+T+  T E+RMAE+++ +N LMKA+EERD +I  LK  IE++  +ESS T 
Sbjct: 77  PQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIASLKNHIESRDAIESSHTH 136

Query: 124 VVKNHNKGKTIVQDDQP 141
           ++KN NKGK I+Q+ QP
Sbjct: 137 IIKNVNKGKAIMQESQP 153

[Close]
BLAST of Lag0000558 vs. NCBI nr
Match: KAA0034095.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 5.4e-10
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 0 

Query: 57  KYNPLFE------PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQ 116
           +YN L E      P  +I++VM+T+  T E+RMAE+++ +N LMKA+EERD +I  LK  
Sbjct: 64  EYNSLSECSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALLKNH 123

Query: 117 IENQHILESSQTQVVKNHNKGKTIVQDDQP 141
           IE++   ESS T  +KN NKGK I+Q+ QP
Sbjct: 124 IESRDAAESSHTHTMKNANKGKAIMQESQP 153

[Close]
BLAST of Lag0000558 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 9.2e-10
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 0 

Query: 64  PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQ 123
           P  +I++VM+T+  T E+RMAE+++ +N LMKA+EERD +I  LK  IE++   ESS T 
Sbjct: 77  PQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALLKNHIESRDAAESSHTH 136

Query: 124 VVKNHNKGKTIVQDDQP 141
            +KN NKGK I+Q+ QP
Sbjct: 137 TIKNANKGKAIMQESQP 153

[Close]
BLAST of Lag0000558 vs. NCBI nr
Match: KAA0036729.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-09
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 0 

Query: 64  PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQ 123
           P  +I++VM+T+  T E RMAE+++ +N LMKA+EERD +I  LK  IE+    ESS T 
Sbjct: 77  PHLNIMSVMVTDVDTSENRMAELEKKVNMLMKAVEERDYEIASLKNHIESHDAAESSHTH 136

Query: 124 VVKNHNKGKTIVQDDQP 141
            +KN NKGK I+Q+ QP
Sbjct: 137 TIKNANKGKAIIQESQP 153

[Close]
BLAST of Lag0000558 vs. NCBI nr
Match: KAA0048375.1 (retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa] >TYK04075.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-09
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 52  DKFLVKYNPLFE-------------PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIE 111
           D  ++K NP  +             P  +I++VM+T+  T E+RMAE+++ +N LMKA+E
Sbjct: 52  DGIIIKENPAIDEHNSLSDRSNEEAPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVE 111

Query: 112 ERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDDQP 141
           ERD +I  LK  I+++   ESS T+ +KN NKGK I+Q+ QP
Sbjct: 112 ERDFEIALLKNHIKSRDAAESSHTRTIKNVNKGKVIMQESQP 153

The following BLAST results are available for this feature:
BLAST of Lag0000558 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051994.11.4e-1050.65ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gyp... [more]
KAA0034095.15.4e-1047.78ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0047477.19.2e-1050.65uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa][more]
KAA0036729.11.2e-0950.65ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0048375.11.6e-0941.18retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa] ... [more]
BLAST of Lag0000558 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000558.1Lag0000558.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0140640 catalytic activity, acting on a nucleic acid
molecular_function GO:0003676 nucleic acid binding