Lag0000534 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000534
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Replication factor C subunit 1
Location	chr4: 9564377 .. 9571512 (-)
RNA-Seq Expression	Lag0000534
Synteny	Lag0000534

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAATGAATTTGAGATGAGTATGATGGGAGAACTTAGCTTCTTCCTTGGACTTCAAATCAAAAAACTCAAGGATGGTATTTTCATAAGTCAAGAGAAACACACAAGGGATTTGCTCAAAGGGTTCAAATTCAATGAAGGTAAAATTGCAAAAACTCCTATGAGCACATCCAGTAAGCTTGACAAGGATGAAAAAGGTAAGTGTGTGGATATAAAATCTTATAGAGGTACAATTAGATCTTTACTTTATTTAACTGCTAGTACACCTGATATTATGTTTAGTGTATGTCTTTGTGCTAGATTTCAATTTTGTCCTAAGGAATCACATTTGCATGCCGTTAAAAGAATTTTTAAATATTTGCTTGGTACTATTGATTTAGGTTTATGGTATCCTAGAAATGTTGAATTTAATTTGGTAGGATATTCCGACGCGGATTTTGCAGGTAGTTTACTTGATCGTAAGAGTACTAGTGAGACTTGTCAATTTCTTGGTAGTTCCTTATTTTCTTGGTGTAGTAAAAAGCAAAATTTGATTGCCTTATCTACTAAGGAAGCGGAATATATTGCGGTTGCTAGTTGTTGTGCTCAAATTCGTTGGATGGAACAAACTCTTTGTGATTTTGGGTTAAAGTTTGATAATATGCCTATATTTTGTGATAATACTAGTGCTATAAATTTTACTAAAAATCCTATACATCATTCTAGGACTGATGTGGAATTTTCCTACCGCGAGCGCACTGGTCAAGTAATAATATAGTTAATTTGATATTCGAATGTCGTCCTCTGGATTGGATTTCTAATCAATTTTAATTACCGAAAATACTCTTGCCAAATTTTATTTAGGGAACCAATCAAAGTGAGAATGAATGTAATTAAACACAAAACAATGAAAAAGTATGACAATCTAATGGAGATAACGTTCTTAGGGAGTTGATTTCACCAATTGGGACTATCACTACTACAAAAACAACCTTTAATGACGGACAGAAAAAATGGGGCGGGGCCTTTAATGACGGACGAAAAACGCGCGCCACTTTTAATGTCGGACGAGCGTTTTTCCGAAAAATGGACTTTTAATGACGGCCATTGCCCGTCATTAAAAACCACCTTTAATGGCGGGCAAAGCCCGCCGTTAAAAGCCCATTTTATTTTTATTTTTATTTTTATTTTTTTAAACGGTAAAAAGGAAAAATATCTTTTCTCTCTCCCGAAAACCCTACCTTCTTCAAACTTCGGCCGCCACAGCTCTTGTTTCTCCCTTCTTCAACCTTCTTCTTCAACCTTCAGCCGTCAAAACTGTCTCCCTTCTTCAACCTTCGGGTGCGAAAGGTTCAACCCCCATTCTTGAATCTTTCTGGGTTGTTCTTAATCAAAAGAAAAAATCGTTCATTTTCTTCTTCGTAATTTTATTTTGCTTCTATGGAGGAGGTTCTGGTCGAGTCGGCCATAGGGGATTTAATTGGAGAAACAGAGTTGTCCGTTGGCGAGTTATTGTTGACAAATATCGGGCACAAATCGTGTCGAAGGCTTCTACATTTGTCGCAAAGGTAAAATTATTCCAATTCTCACTTTTTCCATTTGGAGATTGGATAGATTATAACTCTAGTGGAAAAAATCAAGGCTCTCGAGGAAGACAAGGAAAAACTCGAGATCCTCCTCTCCACAGCTCAAGGGGAGGTGAGATTTCACAAACCAGAATTTTCTTTTCTTTTCTTTTCTTTTTTAAAAGGGTTTCTTTAAATTTATAAAATTTTTCGTCCTTTTCAAGGTCATGTTGTTGTCGGATCAAATCGGTTATCTTGTGGAGGAGGAAGAAATAGAGAAACATGCTGGAGAGAAAGGGAAAGGGAAACCACCGACTAGCAATTCCTCTGTGAAGGTTAAGAAAAATAAATGCCCAACAATTAACTTGGATTTCTATAAGCATTTTCTTCTTCTTATTATTATTATTGTCATTTTTTGTATGATTATCCCATTTAAGCTAAAGTTGTCAATGGTATCATAGCCACTCACTTCCTTGGTTTCATACATTCCCAGGGAGAATTTGTGGGCCTTCATTGGCTTAAGTTTCCTTGATTTTCTACTTTGTTCGATTGGCAGTATCTTGTTTGATCAGCACTATACACAATCATTCTTTCTTTGGCATAAAAGGCAGTTTGTTGGGGTGACAAAAGCTTTTTCAAAAGTATTCCTGTGATTCTTTTCAATAGTCGCTGAGTTTTCTGTAGTCTCTCTTCACCCACACATGTACGTAGCTGAAGCATGTTCAAGCCTATTCTAGTACAAGAGTTCCTTTAATTTGGATGCAACACGCATAGATTTGACTGCCTAGTGCTTCACCTGCTAAGCAAAAAAGTCGAACAGTTGAATCTTCATCCCTTATAACATGGACAGAAAAATATAGGCCAAAGGTTTCAAATGACATTATAGGCAATCAGTCACTGATCTCAATCTCTTGTTTTCTCCTTTGCTATTGTTACATATTATCTTTTCAGTTTTTGTGTGTGTAAATCAAATATTAATGTCTTTGCAACTAAAATTTGTTGCATTTTGCAATTGTAGGTCAAACAACTTCATGATTGGTTGGCACATTGGAATGAAAACTTCCTTGATGGTGGAAGCAAAAAGAAGGGTAAAAAGCTCAACGATTCTGGTGCCAAAAAAGTTGTCTCGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCGGCTAAATTGGTTAGCAAGATGCTTGGTTATGAGGCTATAAAGGTACTTCATTTGTTTTAATATAAAAATTGGGGAGCATTTTGATTATTTTACTCTTGGTAAGAATTTCCAATGCAACTTTCCTCCATGTTTGCATTGTATCTAGGTAAATGCCAGCTATAATCGGGGTAAAGCAGATGCAAAAATTCAAAAGGGAATCAGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATTGGCAATGAATCTTTGCAATTAAAAATGGATCAATTAGTGTGCATTTCCTGAACTTATTGCATTAAGTTAAAGTCACAAGGTTGTGTTAGGTATTTGAAACCTAACAACTTTTCTGGTGAGATAATAGTTAAGTTGAATTATAGGCCAAAACATCCCAAAACTGTGTTGATTATGGACGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGTGAGCATTAAAATCTCCAAAATTCCAATTATTTGCATATGTAATGACCGGTACAGCCATAAGCTAAAAAGTTTTGTGAACTATTGTCTGATTCTCAGCTTTAGGAAACCTACAAAACAACAGGTATTTTAAAAATCTCTTATGGTCTATTATCTACTATTCTTGCCTCCTTCATGGTGTGATTGAATTAGACAATGACTCTGCTTCAGCAATTTCTCTGTTGCATTTTTCTGAGTTGCCCCATAACGTTGTTATAGTTCACAAGTAAATAAAAGGGTTATTCTAATGTTACAACATTTTGTCATCAAATTGGATTGGGGACCACCTTTTTTAATCTCATGTTTGGTTGGTAGCTAGGAAGAATATGTCTTATCTCATTGCCTTTGCATATATCTCTTTTGTTCTTTTGGAATGAAATTTGTTGCTTAAGTTAATGAGGTACACACTTATGTGACTTTGAAACCCCAAATTGAATTGTAAGGGAAAAAGTTTGAGGGTAAGAAAGATTTTGCGGTTCGTATCCTGTTTCCTTTGCATCCTTTCTTGTTCATTTTGATAATAATTGTTTGGTTATTGCAGTGACTTTGTTCCTCTTTTTGGTTACCGAAGAAGGTCCTACTTAATTTTATCAAGGCTCGTTGGTGCGTTCTCATTGAGCTTTATGGCTACCATTGTTAATAGCAAGTATGGTACTGCTACGTGTATACTTCTCGGGTCTCTTTCTGTGGCGTTTTCTGATGTTGTATGTCTTTACCTAATATTCTTTGTTATTTTTTCAAGATCATTTGCCTTTATGTAAACATTTTGTTCGTTAAAAATTTATCTTACTAATAAATCTAACAGATTTTTGTATTTTTCTTTCCTACCTACATTATTTTTCCTTCCTGCTTGCATTATTGTGCTGTTGCTATTGCAAAACCTCGTGAGAATGATGGCTCCATTTCAACTAGTAGATTCTTGATTTGGGGACAAAATCAGGTTTTAATTTATTTGTTTTAAATGTTGAAGTTCTTTTTGTAAACTTCTCTAACTTCCTTTTCATTTCAAACTTTCTTATTTGAATGCAAAATATGTTTATGTTTGTATCCCTTTTCGTTTCGTGTGGCTTTTTACATGTTGCTTACTTTGTTCTTCATCTTGGCTCACATATTGAATACCTTGTTGGTTTGCATTGACAGTGGTTTGGACTTGGGGAAGATCAAGTGCTAGTTCTTGTGCAAAAAAAATGACGATCGGCTTAAGTATTAACAGATTGCTCCTTAAGTGAAGGATTACAAGGTCAACTCTTTCTTTCATATTTTGTTGATACGTTTGCATGAGATAGTGCTCAAATTTTTTGGGTGTTGATAGATGGGGTGCATGTAGTAGTTTCTTTTGTTGTGATTATGCTGGAATTTTGCTTTGTTTATGTTATTGAAGAATTGTTTTACTTGGGAGCTTACTACGATTTTGATGAAATTGTAGGTTAGAACTAACTATTGTACTGAAGTATAGGAGCGAACATATATGTTCGCTCCTATACTTCAGTACAAATTTCCTTTTTCTGGAACCATATTGATGGGGTTGACAATGATTGAACTCTTTGTTATATTTCTTGATATTATTTTGCTGACTATCTTGCAATGTCCTTTAATGATTGTTTAGATTTAGGTTGTGCTTGATGCAAGACCTAACTTGCTTAGTTTTAGGATATTTGGGGTCTTGTTGTTACTTTGAGGATACAATTTTTGTCCTAATGTGGTCTTGCAGGATTCAGACTCTAACACTGAGGAACTTGAATTGTTAGATCCATCACCAGCTAATACAGTGGTCGGCAAAATTTTTGTGTCATGTTTTGTCGAGGTGTGCTTAGTTAGCTCAAACACACTTATTAGTTTTTCATGTGCTTAGTTTTAAGGATATTTGGGGTCTTGTTGTGAACCTAAAGTGTTGTGAGGCTATAGTTGGGTGGTTTTTTTCATATAGAAGTGTGTTTCTCTTGTTTAACAGGTTTAAAAATTTTTGGGTTAGTCACATGTATGTCGTTATGCTGTCGAAATTTCTAGAACAACAGGTTAGAATTAAGATAGATGTTTTAGTAATATCTCTAGGTTAAGTATAGAAACCTAGAGCATTATAGGTTCTCTGAAGGGGTTAAAAACTTGATATCTTTAAGTTTGTAAGCTTTTGGAGTTTATTGGGTTTTCTAACAATTTTTTCCGATACTCATCGAGATTGGTTTTTTTTTTTTTTTTTTGTATTTTATTGTTAACTAAATTTGTTTTTCTTAGGTTCTTCGAGCTGTTGGACATATGTTTGTTATGTGAGTTCATGTTTTGGCGTTGTATCGAACCTAATTACAATTTGTTTTTCTTAGGTTCTTCAAGTTTGATGTACGAGCAAGATTATGGTGACAGGAATGAAAGCGGCATGTACGAGAATTTTTGTTTTTTAGTGTCGGTGTAGACTTTAAATCATAGGTGTTTAGTAATTTTGAGGCTTTTAAGTGTAAGTGTTTGTAATTTTATTTTTATATCAAACTTATATGAATAAAAATTGTATGAACAAATTTGGTTCATTGGCTTATTGGAATGAAATTTGACAAATATTTGATTTCTATACAATTTTGCACATTTAAAATTAAGATTACTTTCTTTATAGGTTGACAAATGAAAAAAATACTGTTCGTATGCCCACCGGGCAACCAACAATTTTTTTATTAGATTATGAACAAAATGATGACGGGCAATGCCTGTCATTAAAAAATATATTTAATGACGGACATTTAATGACAGACACATTTAATGACGGACACCTTTAATGACGGGCATTTGGTTGGAAAATACACTTTTGATGACGGACTTTTAATGACAGGCATTGCCCGTCATTAAAAGTCGTCCGTCATGAAAAGTTACCATGACACTCGTATAGATCACGGACGTCGCCCGTCATGAAAAGTCTTTAATGACGGGCATTGCCCGTCATTAAAAGTGATTTTTGTAGTAGTGTATGAATTAATTCATTGATTAATGACATGCTATGATTCATAAATCTTGGGAAACTAAAATCACACATATCTCTCCCGAGCATACATGATTCTCCCACATGCAATGAACCCGATATCCCTATCTAAATTCAATAAACATGCAAGGCATTAAGGTTAACCTTTTTAACAATTTCTAGAATTAATTATTATCTCCCGATTTCTAGCTAAATCCTAGTTATGCATAATGATTTCTAAGCTAAACCCTCTCTCCCGAGTTAGATTCAATCACAAACATCAATCAATTTATGGCCGGTAAATTGAAAGCATTAAGAACACAATTATGCATAAATGAAATCAATAGTAGTAAACCATTAAATCAATCCATAACGTGCCCAACGACTACATCAATCCCTAAGAATTAAACTTAGCTACACATAATCCGCATTACAATATAAATTAAGTCTAAATAAGCCATAAAAACTACAAAAGCAAAGGTTAAAGAGAATTAAACGCTAGGTAGGCCGAGACCGCACGTCCCCGTTACGATCCCCATGAACGAAGCTTTGATTTCCGTTTTTCCTCCACTTGATTCAGCTTCAAAAACCTCATTTTCCTCTGTTTTACGGCTCCAAATCGTCCAAAAGAAGTCCCTCAATCAGCCCTAATCGCAGAATATAAATAGGCTGAAAATTTGTCTTAGCGTCGCGACGCTATAGGGGTAGCGTCGCGACGCTACTGCCTGCCGCAGATTCTGGAATTGGAAAATTACAAGCGTCGAGACGCTATGGTCACAGCATCGAGACGCTGTGACCTGTTCGCGCCAATTTCAAAGATGGAATGCCAGCGTCGAGAAGCCCAAAGAGCAGCGTCTCGATGCTGGTCTGCGGATGAGCCCCTTTCTCAATCTTCCAACTTGAATCTCTTTCGTTCCTTTGGCTTCTTTTCGCATCCCGAACATCCATTTGACTCCAATTTCTCAATTATGACTTGGCAATAA

mRNA sequence

ATGCACAATGAATTTGAGATGAGTATGATGGGAGAACTTAGCTTCTTCCTTGGACTTCAAATCAAAAAACTCAAGGATGGTATTTTCATAAGTCAAGAGAAACACACAAGGGATTTGCTCAAAGGGTTCAAATTCAATGAAGGTAAAATTGCAAAAACTCCTATGAGCACATCCAGTAAGCTTGACAAGGATGAAAAAGGTTTATGGTATCCTAGAAATGTTGAATTTAATTTGGTAGGATATTCCGACGCGGATTTTGCAGCCGTCAAAACTGTCTCCCTTCTTCAACCTTCGGGTGCGAAAGGTTCAACCCCCATTCTTGAATCTTTCTGGGTTGTTCTTAATCAAAAGAAAAAATCGTTCATTTTCTTCTTCGTAATTTTATTTTGCTTCTATGGAGGAGGTTCTGGTCGAGTCGGCCATAGGGGATTTAATTGGAGAAACAGAGTTGTCCGTTGGCGAGTTATTGTTGACAAATATCGGGCACAAATCGTGTCGAAGGCTTCTACATTTGTCGCAAAGGCTCTCGAGGAAGACAAGGAAAAACTCGAGATCCTCCTCTCCACAGCTCAAGGGGAGGTCATGTTGTTGTCGGATCAAATCGGTTATCTTGTGGAGGAGGAAGAAATAGAGAAACATGCTGGAGAGAAAGGGAAAGGGAAACCACCGACTAGCAATTCCTCTGTGAAGGTCAAACAACTTCATGATTGGTTGGCACATTGGAATGAAAACTTCCTTGATGGTGGAAGCAAAAAGAAGGGTAAAAAGCTCAACGATTCTGGTGCCAAAAAAGTTGTCTCGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCGGCTAAATTGGTTAGCAAGATGCTTGGTTATGAGGCTATAAAGGTAAATGCCAGCTATAATCGGGTTAAGTTGAATTATAGGCCAAAACATCCCAAAACTGTGTTGATTATGGACGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGTGAGCATTAAAATCTCCAAAATTCCAATTATTTGCATATGTAATGACCGTGACTTTGTTCCTCTTTTTGGTTACCGAAGAAGGTCCTACTTAATTTTATCAAGGCTCGTTGGTGCGTTCTCATTGAGCTTTATGGCTACCATTGTTAATAGCAAGTATGGTACTGCTACGTGTATACTTCTCGGGTCTCTTTCTGTGGCGTTTTCTGATGTTGATTCAGACTCTAACACTGAGGAACTTGAATTGTTAGATCCATCACCAGCTAATACAGTGGTCGGCAAAATTTTTGTGTCATGTTTTGTCGAGCGTCGCGACGCTATAGGGGTAGCGTCGCGACGCTACTGCCTGCCGCAGATTCTGGAATTGGAAAATTACAAGCGTCGAGACGCTATGGTCACAGCATCGAGACGCTGTGACCTGTTCGCGCCAATTTCAAAGATGGAATGCCAGCGTCGAGAAGCCCAAAGAGCAGCGTCTCGATGCTGGTCTGCGGATGAGCCCCTTTCTCAATCTTCCAACTTGAATCTCTTTCGTTCCTTTGGCTTCTTTTCGCATCCCGAACATCCATTTGACTCCAATTTCTCAATTATGACTTGGCAATAA

Coding sequence (CDS)

ATGCACAATGAATTTGAGATGAGTATGATGGGAGAACTTAGCTTCTTCCTTGGACTTCAAATCAAAAAACTCAAGGATGGTATTTTCATAAGTCAAGAGAAACACACAAGGGATTTGCTCAAAGGGTTCAAATTCAATGAAGGTAAAATTGCAAAAACTCCTATGAGCACATCCAGTAAGCTTGACAAGGATGAAAAAGGTTTATGGTATCCTAGAAATGTTGAATTTAATTTGGTAGGATATTCCGACGCGGATTTTGCAGCCGTCAAAACTGTCTCCCTTCTTCAACCTTCGGGTGCGAAAGGTTCAACCCCCATTCTTGAATCTTTCTGGGTTGTTCTTAATCAAAAGAAAAAATCGTTCATTTTCTTCTTCGTAATTTTATTTTGCTTCTATGGAGGAGGTTCTGGTCGAGTCGGCCATAGGGGATTTAATTGGAGAAACAGAGTTGTCCGTTGGCGAGTTATTGTTGACAAATATCGGGCACAAATCGTGTCGAAGGCTTCTACATTTGTCGCAAAGGCTCTCGAGGAAGACAAGGAAAAACTCGAGATCCTCCTCTCCACAGCTCAAGGGGAGGTCATGTTGTTGTCGGATCAAATCGGTTATCTTGTGGAGGAGGAAGAAATAGAGAAACATGCTGGAGAGAAAGGGAAAGGGAAACCACCGACTAGCAATTCCTCTGTGAAGGTCAAACAACTTCATGATTGGTTGGCACATTGGAATGAAAACTTCCTTGATGGTGGAAGCAAAAAGAAGGGTAAAAAGCTCAACGATTCTGGTGCCAAAAAAGTTGTCTCGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCGGCTAAATTGGTTAGCAAGATGCTTGGTTATGAGGCTATAAAGGTAAATGCCAGCTATAATCGGGTTAAGTTGAATTATAGGCCAAAACATCCCAAAACTGTGTTGATTATGGACGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGTGAGCATTAAAATCTCCAAAATTCCAATTATTTGCATATGTAATGACCGTGACTTTGTTCCTCTTTTTGGTTACCGAAGAAGGTCCTACTTAATTTTATCAAGGCTCGTTGGTGCGTTCTCATTGAGCTTTATGGCTACCATTGTTAATAGCAAGTATGGTACTGCTACGTGTATACTTCTCGGGTCTCTTTCTGTGGCGTTTTCTGATGTTGATTCAGACTCTAACACTGAGGAACTTGAATTGTTAGATCCATCACCAGCTAATACAGTGGTCGGCAAAATTTTTGTGTCATGTTTTGTCGAGCGTCGCGACGCTATAGGGGTAGCGTCGCGACGCTACTGCCTGCCGCAGATTCTGGAATTGGAAAATTACAAGCGTCGAGACGCTATGGTCACAGCATCGAGACGCTGTGACCTGTTCGCGCCAATTTCAAAGATGGAATGCCAGCGTCGAGAAGCCCAAAGAGCAGCGTCTCGATGCTGGTCTGCGGATGAGCCCCTTTCTCAATCTTCCAACTTGAATCTCTTTCGTTCCTTTGGCTTCTTTTCGCATCCCGAACATCCATTTGACTCCAATTTCTCAATTATGACTTGGCAATAA

Protein sequence

MHNEFEMSMMGELSFFLGLQIKKLKDGIFISQEKHTRDLLKGFKFNEGKIAKTPMSTSSKLDKDEKGLWYPRNVEFNLVGYSDADFAAVKTVSLLQPSGAKGSTPILESFWVVLNQKKKSFIFFFVILFCFYGGGSGRVGHRGFNWRNRVVRWRVIVDKYRAQIVSKASTFVAKALEEDKEKLEILLSTAQGEVMLLSDQIGYLVEEEEIEKHAGEKGKGKPPTSNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSAKLVSKMLGYEAIKVNASYNRVKLNYRPKHPKTVLIMDEVDGMSAGDRGGVADLIVSIKISKIPIICICNDRDFVPLFGYRRRSYLILSRLVGAFSLSFMATIVNSKYGTATCILLGSLSVAFSDVDSDSNTEELELLDPSPANTVVGKIFVSCFVERRDAIGVASRRYCLPQILELENYKRRDAMVTASRRCDLFAPISKMECQRREAQRAASRCWSADEPLSQSSNLNLFRSFGFFSHPEHPFDSNFSIMTWQ

Homology

[Close]

BLAST of Lag0000534 vs. NCBI nr
Match: XP_023532343.1 (replication factor C subunit 1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.9 bits (533), Expect = 5.3e-50
Identity = 117/167 (70.06%), Postives = 123/167 (73.65%), Query Frame = 0


Query: 216 EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGP 275
           EK K K P     N S+ VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK + LCGGP
Sbjct: 361 EKYKPKVPNDIIGNQSL-VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAILLCGGP 420

Query: 276 GIGKTTSAKLVSKMLGYEAIKVNASYNRVK-------------------------LNYR- 335
           GIGKTTSAKLVS+MLGYEAI+VNAS NR K                         L++R 
Sbjct: 421 GIGKTTSAKLVSRMLGYEAIEVNASDNRGKSDAKIQKGISGSNANTIKELISNSSLHFRT 480

Query: 336 --PKHPKTVLIMDEVDGMSAGDRGGVADLIVSIKISKIPIICICNDR 352
             PKHPKTVLIMDEVDGMSAGDRGGVADLI SIK SKIPIICICNDR
Sbjct: 481 NQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKSSKIPIICICNDR 526

[Close]

BLAST of Lag0000534 vs. NCBI nr
Match: XP_023532344.1 (replication factor C subunit 1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.9 bits (533), Expect = 5.3e-50
Identity = 117/167 (70.06%), Postives = 123/167 (73.65%), Query Frame = 0


Query: 216 EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGP 275
           EK K K P     N S+ VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK + LCGGP
Sbjct: 361 EKYKPKVPNDIIGNQSL-VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAILLCGGP 420

Query: 276 GIGKTTSAKLVSKMLGYEAIKVNASYNRVK-------------------------LNYR- 335
           GIGKTTSAKLVS+MLGYEAI+VNAS NR K                         L++R 
Sbjct: 421 GIGKTTSAKLVSRMLGYEAIEVNASDNRGKSDAKIQKGISGSNANTIKELISNSSLHFRT 480

Query: 336 --PKHPKTVLIMDEVDGMSAGDRGGVADLIVSIKISKIPIICICNDR 352
             PKHPKTVLIMDEVDGMSAGDRGGVADLI SIK SKIPIICICNDR
Sbjct: 481 NQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKSSKIPIICICNDR 526

[Close]

BLAST of Lag0000534 vs. NCBI nr
Match: XP_022995017.1 (replication factor C subunit 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 209.5 bits (532), Expect = 7.0e-50
Identity = 117/167 (70.06%), Postives = 123/167 (73.65%), Query Frame = 0


Query: 216 EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGP 275
           EK K K P     N S+ VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK + LCGGP
Sbjct: 360 EKYKPKVPNDIIGNQSL-VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAILLCGGP 419

Query: 276 GIGKTTSAKLVSKMLGYEAIKVNASYNRVK-------------------------LNYR- 335
           GIGKTTSAKLVS+MLGYEAI+VNAS NR K                         L++R 
Sbjct: 420 GIGKTTSAKLVSQMLGYEAIEVNASDNRGKSDAKIQKGISGSNANSIKELISNSSLHFRT 479

Query: 336 --PKHPKTVLIMDEVDGMSAGDRGGVADLIVSIKISKIPIICICNDR 352
             PKHPKTVLIMDEVDGMSAGDRGGVADLI SIK SKIPIICICNDR
Sbjct: 480 DQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKSSKIPIICICNDR 525

[Close]

BLAST of Lag0000534 vs. NCBI nr
Match: XP_022995018.1 (replication factor C subunit 1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 209.5 bits (532), Expect = 7.0e-50
Identity = 117/167 (70.06%), Postives = 123/167 (73.65%), Query Frame = 0


Query: 216 EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGP 275
           EK K K P     N S+ VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK + LCGGP
Sbjct: 360 EKYKPKVPNDIIGNQSL-VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAILLCGGP 419

Query: 276 GIGKTTSAKLVSKMLGYEAIKVNASYNRVK-------------------------LNYR- 335
           GIGKTTSAKLVS+MLGYEAI+VNAS NR K                         L++R 
Sbjct: 420 GIGKTTSAKLVSQMLGYEAIEVNASDNRGKSDAKIQKGISGSNANSIKELISNSSLHFRT 479

Query: 336 --PKHPKTVLIMDEVDGMSAGDRGGVADLIVSIKISKIPIICICNDR 352
             PKHPKTVLIMDEVDGMSAGDRGGVADLI SIK SKIPIICICNDR
Sbjct: 480 DQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKSSKIPIICICNDR 525

[Close]

BLAST of Lag0000534 vs. NCBI nr
Match: KAG6605957.1 (Replication factor C subunit 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 207.2 bits (526), Expect = 3.5e-49
Identity = 116/167 (69.46%), Postives = 122/167 (73.05%), Query Frame = 0


Query: 216 EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGP 275
           EK K K P     N S+ VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK + LCGGP
Sbjct: 361 EKYKPKVPNDIIGNQSL-VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAILLCGGP 420

Query: 276 GIGKTTSAKLVSKMLGYEAIKVNASYNRVK-------------------------LNYR- 335
           GIGKTTSAKLVS+MLGYEAI+VNAS NR K                         L++R 
Sbjct: 421 GIGKTTSAKLVSQMLGYEAIEVNASDNRGKSDAKIQKGISGSNANTIKELISNSSLHFRT 480

Query: 336 --PKHPKTVLIMDEVDGMSAGDRGGVADLIVSIKISKIPIICICNDR 352
             PKHPKTVLIMDEVDGMSAGDRGGVADLI  IK SKIPIICICNDR
Sbjct: 481 DQPKHPKTVLIMDEVDGMSAGDRGGVADLIAIIKSSKIPIICICNDR 526

[Close]

BLAST of Lag0000534 vs. ExPASy Swiss-Prot
Match: Q9C587 (Replication factor C subunit 1 OS=Arabidopsis thaliana OX=3702 GN=RFC1 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 5.6e-42
Identity = 99/167 (59.28%), Postives = 113/167 (67.66%), Query Frame = 0


Query: 216 EKGKGKPP---TSNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGP 275
           EK + K P     N S+ V QLH+WL+HW++ F   GSK KGKKLND+G+KK V L G P
Sbjct: 344 EKYRPKVPNEIVGNQSL-VTQLHNWLSHWHDQFGGTGSKGKGKKLNDAGSKKAVLLSGTP 403

Query: 276 GIGKTTSAKLVSKMLGYEAIKVNASYNRVKLNY--------------------------- 335
           GIGKTTSAKLVS+MLG++A++VNAS +R K N                            
Sbjct: 404 GIGKTTSAKLVSQMLGFQAVEVNASDSRGKANSNIAKGIGGSNANSVKELVNNEAMAANF 463

Query: 336 -RPKHPKTVLIMDEVDGMSAGDRGGVADLIVSIKISKIPIICICNDR 352
            R KHPKTVLIMDEVDGMSAGDRGGVADLI SIKISKIPIICICNDR
Sbjct: 464 DRSKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDR 509

[Close]

BLAST of Lag0000534 vs. ExPASy Swiss-Prot
Match: Q2R2B4 (Replication factor C subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC1 PE=2 SV=2)

HSP 1 Score: 162.5 bits (410), Expect = 1.3e-38
Identity = 95/166 (57.23%), Postives = 106/166 (63.86%), Query Frame = 0


Query: 216 EKGKGKPPTS--NSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPG 275
           EK + K P     +   VKQLHDWL  W + FL  G K KGKK  DSGAKK V L G PG
Sbjct: 410 EKYRPKVPNDIVGNQSMVKQLHDWLRSWEDQFLHSGQKGKGKKQADSGAKKAVLLSGPPG 469

Query: 276 IGKTTSAKLVSKMLGYEAIKVNASYNRVK-------------------------LNY--- 335
           IGKTT+AK+VS+MLG +AI+VNAS +R K                         LNY   
Sbjct: 470 IGKTTTAKVVSQMLGLQAIEVNASDSRGKADSKIEKGVGGSTSNSIKELISNATLNYSNN 529

Query: 336 RPKHPKTVLIMDEVDGMSAGDRGGVADLIVSIKISKIPIICICNDR 352
           R K PK VL+MDEVDGMSAGDRGGVADLI SIK+SKIPIICICNDR
Sbjct: 530 RLKRPKAVLVMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDR 575

[Close]

BLAST of Lag0000534 vs. ExPASy Swiss-Prot
Match: O60182 (Replication factor C subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rfc1 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 9.5e-18
Identity = 61/145 (42.07%), Postives = 78/145 (53.79%), Query Frame = 0


Query: 231 VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSAKLVSKMLGYE 290
           V++L  WL  +++N     +K     L   G  K V L G PGIGKTT+A LV+K+ GY+
Sbjct: 380 VQKLQKWLQDYHKNRKSNFNKPGPDGL---GLYKAVLLSGPPGIGKTTAAHLVAKLEGYD 439

Query: 291 AIKVNASYNRVK---------------------LNYRP---KHPKTVLIMDEVDGMSAGD 350
            +++NAS  R K                         P      + VLIMDE+DGMS+GD
Sbjct: 440 VLELNASDTRSKRLLDEQLFGVTDSQSLAGYFGTKANPVDMAKSRLVLIMDEIDGMSSGD 499

Query: 351 RGGVADLIVSIKISKIPIICICNDR 352
           RGGV  L + IK S IPIICICNDR
Sbjct: 500 RGGVGQLNMIIKKSMIPIICICNDR 521

[Close]

BLAST of Lag0000534 vs. ExPASy Swiss-Prot
Match: P35600 (Replication factor C subunit 1 OS=Drosophila melanogaster OX=7227 GN=Gnf1 PE=1 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-17
Identity = 65/169 (38.46%), Postives = 87/169 (51.48%), Query Frame = 0


Query: 210 IEKHAGEKGKGKPPTSNSSVKVKQLHDWLAHWNENFLDGGSKKK----GKKLNDSGAKKV 269
           ++KH     K     + ++  V +L +WL+ W  N  DG  K +      K +D    K 
Sbjct: 424 VDKHKPTSIKEIVGQAGAASNVTKLMNWLSKWYVNH-DGNKKPQRPNPWAKNDDGSFYKA 483

Query: 270 VSLCGGPGIGKTTSAKLVSKMLGYEAIKVNASYNRVKLNYRPK----------------- 329
             L G PGIGKTT+A LV K LG++A++ NAS  R K   + +                 
Sbjct: 484 ALLSGPPGIGKTTTATLVVKELGFDAVEFNASDTRSKRLLKDEVSTLLSNKSLSGYFTGQ 543

Query: 330 ----HPKTVLIMDEVDGMSAG-DRGGVADLIVSIKISKIPIICICNDRD 353
                 K VLIMDEVDGM+   DRGG+ +LI  IK S IPIIC+CNDR+
Sbjct: 544 GQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICMCNDRN 591

[Close]

BLAST of Lag0000534 vs. ExPASy Swiss-Prot
Match: P38630 (Replication factor C subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RFC1 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.2e-16
Identity = 58/148 (39.19%), Postives = 76/148 (51.35%), Query Frame = 0


Query: 231 VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGIGKTTSAKLVSKMLGYE 290
           V +L +WLA+W EN      K  GK  + SG  +   L G PGIGKTT+A LV++ LGY+
Sbjct: 317 VMKLKNWLANW-ENSKKNSFKHAGK--DGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 376

Query: 291 AIKVNAS--------------------------YNRVKLNYRPKHPKTVLIMDEVDGMSA 350
            ++ NAS                          +N    N   KH   V+IMDEVDGMS 
Sbjct: 377 ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKH--FVIIMDEVDGMSG 436

Query: 351 GDRGGVADLIVSIKISKIPIICICNDRD 353
           GDRGGV  L    + +  P+I ICN+R+
Sbjct: 437 GDRGGVGQLAQFCRKTSTPLILICNERN 459

[Close]

BLAST of Lag0000534 vs. ExPASy TrEMBL
Match: A0A6J1JXK0 (Replication factor C subunit 1 OS=Cucurbita maxima OX=3661 GN=LOC111490698 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.4e-50
Identity = 117/167 (70.06%), Postives = 123/167 (73.65%), Query Frame = 0


Query: 216 EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGP 275
           EK K K P     N S+ VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK + LCGGP
Sbjct: 360 EKYKPKVPNDIIGNQSL-VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAILLCGGP 419

Query: 276 GIGKTTSAKLVSKMLGYEAIKVNASYNRVK-------------------------LNYR- 335
           GIGKTTSAKLVS+MLGYEAI+VNAS NR K                         L++R 
Sbjct: 420 GIGKTTSAKLVSQMLGYEAIEVNASDNRGKSDAKIQKGISGSNANSIKELISNSSLHFRT 479

Query: 336 --PKHPKTVLIMDEVDGMSAGDRGGVADLIVSIKISKIPIICICNDR 352
             PKHPKTVLIMDEVDGMSAGDRGGVADLI SIK SKIPIICICNDR
Sbjct: 480 DQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKSSKIPIICICNDR 525

[Close]

BLAST of Lag0000534 vs. ExPASy TrEMBL
Match: A0A6J1K6Q0 (Replication factor C subunit 1 OS=Cucurbita maxima OX=3661 GN=LOC111490698 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.4e-50
Identity = 117/167 (70.06%), Postives = 123/167 (73.65%), Query Frame = 0


Query: 216 EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGP 275
           EK K K P     N S+ VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK + LCGGP
Sbjct: 360 EKYKPKVPNDIIGNQSL-VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAILLCGGP 419

Query: 276 GIGKTTSAKLVSKMLGYEAIKVNASYNRVK-------------------------LNYR- 335
           GIGKTTSAKLVS+MLGYEAI+VNAS NR K                         L++R 
Sbjct: 420 GIGKTTSAKLVSQMLGYEAIEVNASDNRGKSDAKIQKGISGSNANSIKELISNSSLHFRT 479

Query: 336 --PKHPKTVLIMDEVDGMSAGDRGGVADLIVSIKISKIPIICICNDR 352
             PKHPKTVLIMDEVDGMSAGDRGGVADLI SIK SKIPIICICNDR
Sbjct: 480 DQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKSSKIPIICICNDR 525

[Close]

BLAST of Lag0000534 vs. ExPASy TrEMBL
Match: A0A6J1H397 (Replication factor C subunit 1 OS=Cucurbita moschata OX=3662 GN=LOC111459280 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.9e-49
Identity = 116/167 (69.46%), Postives = 122/167 (73.05%), Query Frame = 0


Query: 216 EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGP 275
           EK K K P     N S+ VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK + LCGGP
Sbjct: 360 EKYKPKVPNDIIGNQSL-VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAILLCGGP 419

Query: 276 GIGKTTSAKLVSKMLGYEAIKVNASYNRVK-------------------------LNYR- 335
           GIGKTTSAKLVS+MLGYEAI+VNAS NR K                         L++R 
Sbjct: 420 GIGKTTSAKLVSQMLGYEAIEVNASDNRGKSDAKIQKGISGSNANTIKELISNSSLHFRT 479

Query: 336 --PKHPKTVLIMDEVDGMSAGDRGGVADLIVSIKISKIPIICICNDR 352
             PK PKTVLIMDEVDGMSAGDRGGVADLI SIK SKIPIICICNDR
Sbjct: 480 DQPKRPKTVLIMDEVDGMSAGDRGGVADLIASIKSSKIPIICICNDR 525

[Close]

BLAST of Lag0000534 vs. ExPASy TrEMBL
Match: A0A6J1H1H3 (Replication factor C subunit 1 OS=Cucurbita moschata OX=3662 GN=LOC111459280 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.9e-49
Identity = 116/167 (69.46%), Postives = 122/167 (73.05%), Query Frame = 0


Query: 216 EKGKGKPPT---SNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGP 275
           EK K K P     N S+ VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKK + LCGGP
Sbjct: 360 EKYKPKVPNDIIGNQSL-VKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAILLCGGP 419

Query: 276 GIGKTTSAKLVSKMLGYEAIKVNASYNRVK-------------------------LNYR- 335
           GIGKTTSAKLVS+MLGYEAI+VNAS NR K                         L++R 
Sbjct: 420 GIGKTTSAKLVSQMLGYEAIEVNASDNRGKSDAKIQKGISGSNANTIKELISNSSLHFRT 479

Query: 336 --PKHPKTVLIMDEVDGMSAGDRGGVADLIVSIKISKIPIICICNDR 352
             PK PKTVLIMDEVDGMSAGDRGGVADLI SIK SKIPIICICNDR
Sbjct: 480 DQPKRPKTVLIMDEVDGMSAGDRGGVADLIASIKSSKIPIICICNDR 525

[Close]

BLAST of Lag0000534 vs. ExPASy TrEMBL
Match: A0A6J1DHR4 (Replication factor C subunit 1 OS=Momordica charantia OX=3673 GN=LOC111020593 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.3e-46
Identity = 109/165 (66.06%), Postives = 116/165 (70.30%), Query Frame = 0


Query: 219 KGKPPTSNSSV----KVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGPGI 278
           K +P  SN  +     VKQLHDWLAHWNENF D  SKKKGKKLNDS AKK V LCGGPGI
Sbjct: 363 KYRPKVSNDIIGNQSLVKQLHDWLAHWNENFFDAQSKKKGKKLNDSSAKKAVLLCGGPGI 422

Query: 279 GKTTSAKLVSKMLGYEAIKVNASYNRVK-------------------------LNYR--- 338
           GKTTSAKLVS+MLGY+AI+VNAS NR K                         L++R   
Sbjct: 423 GKTTSAKLVSQMLGYQAIEVNASDNRGKSDAKIQKGISGSNANSIKELISNESLHFRTNQ 482

Query: 339 PKHPKTVLIMDEVDGMSAGDRGGVADLIVSIKISKIPIICICNDR 352
           PK PKTVLIMDEVDGMSAGDRGGVADLI SIK SKIPIICICNDR
Sbjct: 483 PKRPKTVLIMDEVDGMSAGDRGGVADLIASIKTSKIPIICICNDR 527

[Close]

BLAST of Lag0000534 vs. TAIR 10
Match: AT5G22010.1 (replication factor C1 )

HSP 1 Score: 173.7 bits (439), Expect = 3.9e-43
Identity = 99/167 (59.28%), Postives = 113/167 (67.66%), Query Frame = 0


Query: 216 EKGKGKPP---TSNSSVKVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKVVSLCGGP 275
           EK + K P     N S+ V QLH+WL+HW++ F   GSK KGKKLND+G+KK V L G P
Sbjct: 344 EKYRPKVPNEIVGNQSL-VTQLHNWLSHWHDQFGGTGSKGKGKKLNDAGSKKAVLLSGTP 403

Query: 276 GIGKTTSAKLVSKMLGYEAIKVNASYNRVKLNY--------------------------- 335
           GIGKTTSAKLVS+MLG++A++VNAS +R K N                            
Sbjct: 404 GIGKTTSAKLVSQMLGFQAVEVNASDSRGKANSNIAKGIGGSNANSVKELVNNEAMAANF 463

Query: 336 -RPKHPKTVLIMDEVDGMSAGDRGGVADLIVSIKISKIPIICICNDR 352
            R KHPKTVLIMDEVDGMSAGDRGGVADLI SIKISKIPIICICNDR
Sbjct: 464 DRSKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDR 509

[Close]

BLAST of Lag0000534 vs. TAIR 10
Match: AT2G32040.1 (Major facilitator superfamily protein )

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-15
Identity = 45/62 (72.58%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 352 DFVPLFGYRRRSYLILSRLVGAFSLSFMATIVNSKYGTATCILLGSLSVAFSDVDSDSNT 411
           D VPLFGYRRRSYL+LS L+GAFS S MA  V+SKY  A CILLGSLSVAFSDV  DS  
Sbjct: 184 DSVPLFGYRRRSYLVLSGLLGAFSWSLMAGFVDSKYSAAFCILLGSLSVAFSDVVVDSMV 243

Query: 412 EE 414
            E
Sbjct: 244 VE 245

[Close]

BLAST of Lag0000534 vs. TAIR 10
Match: AT1G04730.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-08
Identity = 64/258 (24.81%), Postives = 106/258 (41.09%), Query Frame = 0


Query: 150 VVRWRVIVDKYRAQIVSKASTFVAKALEEDKEKLEILLSTAQGEVMLLSDQIGYLVEE-- 209
           V+  ++ VDKY        S+F  + L +++   E+LL   Q +  +   +I    E   
Sbjct: 220 VMHEKLWVDKY------SPSSF-TELLSDEQTNREVLLWLKQWDASVFGSEIRSTTEAVL 279

Query: 210 EEIEKHAGEKGKGKPPTSNSSVKVKQLHDWLAH----------WNENFLD-GGSKKKGKK 269
             +++H+      K  + ++  + KQ + W              N N  D      K  K
Sbjct: 280 SALKRHSTTSHHQK--SDSAFTRKKQFNRWSKESFGYSKNAEVSNTNTADINDLWNKKSK 339

Query: 270 LNDSGAKKVVSLCGGPGIGKTTSAKLVSKMLGYEAIKVNAS-----------------YN 329
           L     +K++ LCG PG+GKTT A + +K  GY  +++NAS                  N
Sbjct: 340 LTGPPEQKILLLCGAPGLGKTTLAHIAAKHCGYRVVEINASDERSASAIETRILDVVQMN 399

Query: 330 RVKLNYRPKHPKTVLIMDEVDGMSAGDRGGVADLIVSIKISK------------------ 351
            V  + RPK     L++DE+DG + GD  G  D+I+ + +++                  
Sbjct: 400 SVTADSRPK----CLVIDEIDG-ALGDGKGAVDVILKMVLAERKHATGKENVENVKTSSK 459

The following BLAST results are available for this feature:

BLAST of Lag0000534 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532343.1	5.3e-50	70.06	replication factor C subunit 1 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023532344.1	5.3e-50	70.06	replication factor C subunit 1 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022995017.1	7.0e-50	70.06	replication factor C subunit 1 isoform X1 [Cucurbita maxima]	[more]
XP_022995018.1	7.0e-50	70.06	replication factor C subunit 1 isoform X2 [Cucurbita maxima]	[more]
KAG6605957.1	3.5e-49	69.46	Replication factor C subunit 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lag0000534 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C587	5.6e-42	59.28	Replication factor C subunit 1 OS=Arabidopsis thaliana OX=3702 GN=RFC1 PE=2 SV=1	[more]
Q2R2B4	1.3e-38	57.23	Replication factor C subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC1 ...	[more]
O60182	9.5e-18	42.07	Replication factor C subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]
P35600	1.2e-17	38.46	Replication factor C subunit 1 OS=Drosophila melanogaster OX=7227 GN=Gnf1 PE=1 S...	[more]
P38630	5.2e-16	39.19	Replication factor C subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /...	[more]

BLAST of Lag0000534 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JXK0	3.4e-50	70.06	Replication factor C subunit 1 OS=Cucurbita maxima OX=3661 GN=LOC111490698 PE=3 ...	[more]
A0A6J1K6Q0	3.4e-50	70.06	Replication factor C subunit 1 OS=Cucurbita maxima OX=3661 GN=LOC111490698 PE=3 ...	[more]
A0A6J1H397	2.9e-49	69.46	Replication factor C subunit 1 OS=Cucurbita moschata OX=3662 GN=LOC111459280 PE=...	[more]
A0A6J1H1H3	2.9e-49	69.46	Replication factor C subunit 1 OS=Cucurbita moschata OX=3662 GN=LOC111459280 PE=...	[more]
A0A6J1DHR4	2.3e-46	66.06	Replication factor C subunit 1 OS=Momordica charantia OX=3673 GN=LOC111020593 PE...	[more]

BLAST of Lag0000534 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22010.1	3.9e-43	59.28	replication factor C1	[more]
AT2G32040.1	1.2e-15	72.58	Major facilitator superfamily protein	[more]
AT1G04730.1	1.1e-08	24.81	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 173..193
None	No IPR available	PANTHER	PTHR23389	CHROMOSOME TRANSMISSION FIDELITY FACTOR 18	coord: 230..352
None	No IPR available	PANTHER	PTHR23389:SF6	REPLICATION FACTOR C SUBUNIT 1	coord: 230..352
None	No IPR available	CDD	cd00009	AAA	coord: 268..334 e-value: 1.46523E-6 score: 45.9851
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 262..367 e-value: 2.0E-5 score: 34.0
IPR039309	Biopterin transporter family	PFAM	PF03092	BT1	coord: 352..424 e-value: 4.5E-11 score: 41.7
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 267..326 e-value: 7.4E-5 score: 23.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 224..364 e-value: 5.1E-24 score: 87.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 232..355

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000534.1	Lag0000534.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003677	DNA binding