Lag0000527 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000527
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr4: 9476556 .. 9477068 (+)
RNA-Seq ExpressionLag0000527
SyntenyLag0000527
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATTCGAGGATATGCTTGAGAATTGGGAAAGATTCAACCTCACTGCTGAGGAGGAGAACACTGAAGTTGATGTCGATAGACAGGCGACTTTGGTTACTAGTCAATCGCTCGGTTTTAGCATCATTGGGAAATTACTAGCTCCCCAGATTATCTCCGGTGATGTGATGAGACGGACGTTCAAGTTAGCATGGAACATTCCAAATGACCTAATGGTGGAAAAAATAGGTCCTAATTTGTTCCTTTTTTCACTGAGATCGGAATCGGACCAAACTCGGGTCATGAGGCAGGGGCCATGGCTTTTTGACAAATTCCTGTTGGTTTTATCGAAACCCATCCCAATGGTGAAGCCTACATTGATGGAATTCAATTATGCAAACTTTTGGGTGAATTTTTGTGACCTACCAATGGATTTATATAATAGGTCGATGGTGGAGAAATTGGGCAACGCAATCGTGAAGGATTTGGAATTCCCAATTCCGTTACAGCGGAAGCAATTGGACCGTTCGTAA

mRNA sequence

ATGGCATTCGAGGATATGCTTGAGAATTGGGAAAGATTCAACCTCACTGCTGAGGAGGAGAACACTGAAGTTGATGTCGATAGACAGGCGACTTTGGTTACTAGTCAATCGCTCGGTTTTAGCATCATTGGGAAATTACTAGCTCCCCAGATTATCTCCGGTGATGTGATGAGACGGACGTTCAAGTTAGCATGGAACATTCCAAATGACCTAATGGTGGAAAAAATAGGTCCTAATTTGTTCCTTTTTTCACTGAGATCGGAATCGGACCAAACTCGGGTCATGAGGCAGGGGCCATGGCTTTTTGACAAATTCCTGTTGGTTTTATCGAAACCCATCCCAATGGTGAAGCCTACATTGATGGAATTCAATTATGCAAACTTTTGGGTGAATTTTTGTGACCTACCAATGGATTTATATAATAGGTCGATGGTGGAGAAATTGGGCAACGCAATCGTGAAGGATTTGGAATTCCCAATTCCGTTACAGCGGAAGCAATTGGACCGTTCGTAA

Coding sequence (CDS)

ATGGCATTCGAGGATATGCTTGAGAATTGGGAAAGATTCAACCTCACTGCTGAGGAGGAGAACACTGAAGTTGATGTCGATAGACAGGCGACTTTGGTTACTAGTCAATCGCTCGGTTTTAGCATCATTGGGAAATTACTAGCTCCCCAGATTATCTCCGGTGATGTGATGAGACGGACGTTCAAGTTAGCATGGAACATTCCAAATGACCTAATGGTGGAAAAAATAGGTCCTAATTTGTTCCTTTTTTCACTGAGATCGGAATCGGACCAAACTCGGGTCATGAGGCAGGGGCCATGGCTTTTTGACAAATTCCTGTTGGTTTTATCGAAACCCATCCCAATGGTGAAGCCTACATTGATGGAATTCAATTATGCAAACTTTTGGGTGAATTTTTGTGACCTACCAATGGATTTATATAATAGGTCGATGGTGGAGAAATTGGGCAACGCAATCGTGAAGGATTTGGAATTCCCAATTCCGTTACAGCGGAAGCAATTGGACCGTTCGTAA

Protein sequence

MAFEDMLENWERFNLTAEEENTEVDVDRQATLVTSQSLGFSIIGKLLAPQIISGDVMRRTFKLAWNIPNDLMVEKIGPNLFLFSLRSESDQTRVMRQGPWLFDKFLLVLSKPIPMVKPTLMEFNYANFWVNFCDLPMDLYNRSMVEKLGNAIVKDLEFPIPLQRKQLDRS
Homology
BLAST of Lag0000527 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 151.4 bits (381), Expect = 7.2e-33
Identity = 72/152 (47.37%), Postives = 97/152 (63.82%), Query Frame = 0

Query: 1   MAFEDMLENWERFNLTAEEENTEVDVDRQATLVTSQSLGFSIIGKLLAPQIISGDVMRRT 60
           M  E++L +W++F LT+EE+   +DVD  A  +  Q L +S++GKLLA +IIS DV+ R 
Sbjct: 1   MDHENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRV 60

Query: 61  FKLAWNIPNDLMVEKIGPNLFLFSLRSESDQTRVMRQGPWLFDKFLLVLSKPIPMVKPTL 120
             LAW + + L VE IG NLFLF    E D  RVM+ GPW FDK L+VL KP      + 
Sbjct: 61  LLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISE 120

Query: 121 MEFNYANFWVNFCDLPMDLYNRSMVEKLGNAI 153
           +EFN   FW++  DLPM   N++M  +LGNAI
Sbjct: 121 LEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAI 152

BLAST of Lag0000527 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 131.3 bits (329), Expect = 7.7e-27
Identity = 62/153 (40.52%), Postives = 95/153 (62.09%), Query Frame = 0

Query: 1   MAFEDMLENWERFNLTAEEENTEVDVDRQATLVTSQSLGFSIIGKLLAPQIISGDVMRRT 60
           MA  ++LE W+ F LT+EE+   VD+D  A   T + L  S+I KLL+ + IS  V++ T
Sbjct: 1   MAASNLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNT 60

Query: 61  FKLAWNIP-NDLMVEKIGPNLFLFSLRSESDQTRVMRQGPWLFDKFLLVLSKPIPMVKPT 120
            K+AW +      V+ IG N+FLF+    SD+ R++R GPW FD+ L+++  P+ + KP 
Sbjct: 61  LKIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPL 120

Query: 121 LMEFNYANFWVNFCDLPMDLYNRSMVEKLGNAI 153
            M+F   + WV+F DL +   N++M  +LGNAI
Sbjct: 121 DMDFRNVSLWVHFFDLSLACMNKTMATRLGNAI 153

BLAST of Lag0000527 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 2.2e-26
Identity = 60/153 (39.22%), Postives = 92/153 (60.13%), Query Frame = 0

Query: 1   MAFEDMLENWERFNLTAEEENTEVDVDRQATLVTSQSLGFSIIGKLLAPQIISGDVMRRT 60
           MA  D+LE W+ F LT+EEE T +DVD  A   T   L   ++GKL   + I+  VM+ T
Sbjct: 1   MATFDLLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNT 60

Query: 61  FKLAWNIPNDLM-VEKIGPNLFLFSLRSESDQTRVMRQGPWLFDKFLLVLSKPIPMVKPT 120
            + AW + N+   V+ +G NLFLFS     D+ ++ + GPW FD+ L++++KP+ ++ P+
Sbjct: 61  MRTAWKLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPS 120

Query: 121 LMEFNYANFWVNFCDLPMDLYNRSMVEKLGNAI 153
            ++F     WV F DLP+    R M  +LGNA+
Sbjct: 121 ELDFTKLPIWVRFFDLPLGCITRDMAIRLGNAL 153

BLAST of Lag0000527 vs. NCBI nr
Match: PQQ10307.1 (uncharacterized protein Pyn_17609 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-17
Identity = 45/154 (29.22%), Postives = 87/154 (56.49%), Query Frame = 0

Query: 4   EDMLENWERFNLTAEEENTEVDVDRQATLVTSQSLGFSIIGKLLAPQIISGDVMRRTFKL 63
           E+++ + E+  +  E+EN  + V++       + L  S++GK+      + +  ++T   
Sbjct: 2   EEVITSLEKALILTEDENDAIQVEQHDIDDVGERLKMSLVGKVFTTNGFNREAFKQTMLK 61

Query: 64  AWNIPNDLMVEKIGPNLFLFSLRSESDQTRVMRQGPWLFDKFLLVLSKPIPMVKPTLMEF 123
            WN   +++V+ +G NLFLF   +E D+ +V+R GPW FDK L++L  P   V P+ M  
Sbjct: 62  IWNTAREVVVKDLGENLFLFIFATEGDRLKVLRSGPWNFDKALVLLEVPDGRVAPSKMHL 121

Query: 124 NYANFWVNFCDLPMDLYNRSMVEKLGNAIVKDLE 158
            YA+FW+   ++P+     +M  ++GN++ + L+
Sbjct: 122 KYADFWIQIHNVPLCCMTTNMGRQIGNSLGRCLD 155

BLAST of Lag0000527 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 99.0 bits (245), Expect = 4.2e-17
Identity = 45/146 (30.82%), Postives = 80/146 (54.79%), Query Frame = 0

Query: 4   EDMLENWERFNLTAEEENTEVDVDRQATLVTSQSLGFSIIGKLLAPQIISGDVMRRTFKL 63
           +++ + WE F  T  +EN  V +DR   ++T+ ++   ++ KL   + IS + +R   K 
Sbjct: 2   DEITDLWEHFKST-NDENETVTIDRGKPILTADNVKLCVVAKLHTSKRISAEAIRSVMKS 61

Query: 64  AWNIPNDLMVEKIGPNLFLFSLRSESDQTRVMRQGPWLFDKFLLVLSKPIPMVKPTLMEF 123
            W + N    E +G N+++   +S S+++RV+  GPW F+K LLVL+ P    +P  M F
Sbjct: 62  VWRVHNSTRFEPLGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTSPTATNQPLDMNF 121

Query: 124 NYANFWVNFCDLPMDLYNRSMVEKLG 150
           N+  FW+   ++P +  +  M   LG
Sbjct: 122 NFCAFWIQIHNIPFECISTEMANILG 146

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156185.17.2e-3347.37uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_022132681.17.7e-2740.52uncharacterized protein LOC111005481 [Momordica charantia][more]
XP_022158377.12.2e-2639.22uncharacterized protein LOC111024874 [Momordica charantia][more]
PQQ10307.11.9e-1729.22uncharacterized protein Pyn_17609 [Prunus yedoensis var. nudiflora][more]
XP_022149484.14.2e-1730.82uncharacterized protein LOC111017902 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 164..170
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 36..152
e-value: 2.3E-22
score: 79.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000527.1Lag0000527.1mRNA