Lag0000526 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000526
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon gag protein
Locationchr4: 9458356 .. 9458688 (-)
RNA-Seq ExpressionLag0000526
SyntenyLag0000526
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGACGTTCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTATCTCCACATCGAAGAAAAGTCAACCTTCAACATCTATTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAAATGGATAACTTGGAGGTGAAAATTTTCGATGAAGTAAACAACGACATGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGATGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAAGTGAAACCAAATCTCATTATCTTGACCAATCCTACAAGTCAAGGATCTGATCAAGACCATGATGAAGATAAGGGCTTTTAA

mRNA sequence

ATGTTCGACGTTCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTATCTCCACATCGAAGAAAAGTCAACCTTCAACATCTATTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAAATGGATAACTTGGAGGTGAAAATTTTCGATGAAGTAAACAACGACATGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGATGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAAGTGAAACCAAATCTCATTATCTTGACCAATCCTACAAGTCAAGGATCTGATCAAGACCATGATGAAGATAAGGGCTTTTAA

Coding sequence (CDS)

ATGTTCGACGTTCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTATCTCCACATCGAAGAAAAGTCAACCTTCAACATCTATTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAAATGGATAACTTGGAGGTGAAAATTTTCGATGAAGTAAACAACGACATGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGATGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAAGTGAAACCAAATCTCATTATCTTGACCAATCCTACAAGTCAAGGATCTGATCAAGACCATGATGAAGATAAGGGCTTTTAA

Protein sequence

MFDVHLHSTFSFPKAKYLHIEEKSTFNIYFDRLKVTSDQPKRKMDNLEVKIFDEVNNDMKLQSSIPSRMKMKFSVLINTEGSLKVKPNLIILTNPTSQGSDQDHDEDKGF
Homology
[Close]
BLAST of Lag0000526 vs. NCBI nr
Match: KAA0068201.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21121.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 3.7e-14
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 0 

Query: 30  FDRLKVTSDQPKRKMDNLEVKIFDEVNNDMKLQSSIPSRMKMKFSVLINTEGSLKVKPNL 89
           FDRLK+T+DQ +R+M +L+ K F E N+D K+ S +PSRMK K SV INTEGSL VKP  
Sbjct: 302 FDRLKMTNDQQQREMKSLKAKPFHEKNDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 361

Query: 90  IILTNPTSQGSDQDHDEDK 109
           II TNP ++G +Q  DE+K
Sbjct: 362 IIFTNPINEGDEQILDENK 380

[Close]
BLAST of Lag0000526 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 0 

Query: 30  FDRLKVTSDQPKRKMDNLEVKIFDEVNNDMKLQSSIPSRMKMKFSVLINTEGSLKVKPNL 89
           FDRLK+T+DQ +R+M +L+ K F E N+D K+ S +PSRMK K SV INTEGSL VKP  
Sbjct: 191 FDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 250

Query: 90  IILTNPTSQGSDQDHDEDK 109
           II TNP ++G ++  DE+K
Sbjct: 251 IIFTNPINEGDEKILDENK 269

[Close]
BLAST of Lag0000526 vs. NCBI nr
Match: KAA0032121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 0 

Query: 30  FDRLKVTSDQPKRKMDNLEVKIFDEVNNDMKLQSSIPSRMKMKFSVLINTEGSLKVKPNL 89
           FDRLK+T+DQ +R+M  L+ K F E N+D K+ S +PSRMK K SV INTEGSL VKP  
Sbjct: 660 FDRLKMTNDQQQREMKTLKAKPFQEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 719

Query: 90  IILTNPTSQGSDQDHDEDK 109
           II TNP ++G ++  DE+K
Sbjct: 720 IIFTNPINEGDEKILDENK 738

[Close]
BLAST of Lag0000526 vs. NCBI nr
Match: TYK08944.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 0 

Query: 30  FDRLKVTSDQPKRKMDNLEVKIFDEVNNDMKLQSSIPSRMKMKFSVLINTEGSLKVKPNL 89
           FDRLK+T+DQ +R+M +L+ K F E N+D K+ + +PSRMK K SV INTEGSL VKP  
Sbjct: 608 FDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSLTVKPRF 667

Query: 90  IILTNPTSQGSDQDHDEDK 109
           II TNP ++G ++  DE+K
Sbjct: 668 IIFTNPINEGDEKFFDENK 686

[Close]
BLAST of Lag0000526 vs. NCBI nr
Match: KAA0055462.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 0 

Query: 30  FDRLKVTSDQPKRKMDNLEVKIFDEVNNDMKLQSSIPSRMKMKFSVLINTEGSLKVKPNL 89
           FDRLK+T+DQ +R+M +L+ K F E N+D K+ + +PSRMK K SV INTEGSL VKP  
Sbjct: 608 FDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSLTVKPRF 667

Query: 90  IILTNPTSQGSDQDHDEDK 109
           II TNP ++G ++  DE+K
Sbjct: 668 IIFTNPINEGDEKFFDENK 686

The following BLAST results are available for this feature:
BLAST of Lag0000526 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0068201.13.7e-1458.23retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21121.1 retrotranspos... [more]
KAA0044978.11.1e-1356.96retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0032121.11.1e-1356.96ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK08944.11.4e-1355.70retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0055462.11.4e-1355.70retrotransposon gag protein [Cucumis melo var. makuwa][more]
BLAST of Lag0000526 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000526.1Lag0000526.1mRNA