Lag0000502 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000502
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	dnaJ homolog subfamily B member 4-like
Location	chr4: 9058820 .. 9059188 (+)
RNA-Seq Expression	Lag0000502
Synteny	Lag0000502

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCGTCTACAGCCCATGGCAAAAACGAGCGGTACATAATCAGCGCGCCGACGACACCGTTAGGCTCGAGCCCCAACCAGAGCGTGGACGAGAGCTTTTTCGCCAACATATTGAGGGCATTTTCCAGAAGCAACATTCGAAGAAGCAAGACGCCGACGCCAAGTCCGAAGTCATTATCGAGAAACTCGAGCTGTCAGAGCAAAACGCCGACCTCATTATCGAGAAATCAAAACCGAAGGAGCAACTCAGATTCAAAATTCCTGGAGGCGACGACGATTGAAGAGGGAGAGAATCACAGTCGAGGAAGAGAGAGGGTGGCTGAAAATGGAGAGGGAAAAGGGGCGGCTGAAAATGGGCGGCTATAA

mRNA sequence

ATGTCTTCGTCTACAGCCCATGGCAAAAACGAGCGGTACATAATCAGCGCGCCGACGACACCGTTAGGCTCGAGCCCCAACCAGAGCGTGGACGAGAGCTTTTTCGCCAACATATTGAGGGCATTTTCCAGAAGCAACATTCGAAGAAGCAAGACGCCGACGCCAAGTCCGAAGTCATTATCGAGAAACTCGAGCTGTCAGAGCAAAACGCCGACCTCATTATCGAGAAATCAAAACCGAAGGAGCAACTCAGATTCAAAATTCCTGGAGGCGACGACGATTGAAGAGGGAGAGAATCACAGTCGAGGAAGAGAGAGGGTGGCTGAAAATGGAGAGGGAAAAGGGGCGGCTGAAAATGGGCGGCTATAA

Coding sequence (CDS)

ATGTCTTCGTCTACAGCCCATGGCAAAAACGAGCGGTACATAATCAGCGCGCCGACGACACCGTTAGGCTCGAGCCCCAACCAGAGCGTGGACGAGAGCTTTTTCGCCAACATATTGAGGGCATTTTCCAGAAGCAACATTCGAAGAAGCAAGACGCCGACGCCAAGTCCGAAGTCATTATCGAGAAACTCGAGCTGTCAGAGCAAAACGCCGACCTCATTATCGAGAAATCAAAACCGAAGGAGCAACTCAGATTCAAAATTCCTGGAGGCGACGACGATTGAAGAGGGAGAGAATCACAGTCGAGGAAGAGAGAGGGTGGCTGAAAATGGAGAGGGAAAAGGGGCGGCTGAAAATGGGCGGCTATAA

Protein sequence

MSSSTAHGKNERYIISAPTTPLGSSPNQSVDESFFANILRAFSRSNIRRSKTPTPSPKSLSRNSSCQSKTPTSLSRNQNRRSNSDSKFLEATTIEEGENHSRGRERVAENGEGKGAAENGRL

Homology

[Close]

BLAST of Lag0000502 vs. NCBI nr
Match: XP_011657541.1 (dnaJ homolog subfamily B member 4 [Cucumis sativus] >KGN47935.1 hypothetical protein Csa_003726 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 7.2e-19
Identity = 62/100 (62.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 6   AHGKNERYIISAPTTPLGSSPNQSVDESFFANILRAFSRSNIRRSKTP------------ 65
           ++GKNE YIIS+PTTPLGS+ +QSVDESFFANI R  SRS+ RRSKTP            
Sbjct: 53  SNGKNEAYIISSPTTPLGSNQHQSVDESFFANISRTISRSSSRRSKTPTPSPISLSRNTS 112

Query: 66  ----TPSPKSLSRNSSCQSKTPTSLSRNQNRRSNSDSKFL 90
               TPSP+SLSRN+S +S TPTSL R++ RRSNSDS+FL
Sbjct: 113 RRSTTPSPRSLSRNTSRRSTTPTSLMRDEKRRSNSDSEFL 152

[Close]

BLAST of Lag0000502 vs. NCBI nr
Match: XP_022158903.1 (uncharacterized protein LOC111025360 [Momordica charantia])

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-18
Identity = 58/80 (72.50%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 11  ERYIISAPTTPLGSSPNQSVDESFFANILRAFSRSNIRRSKTPTPSPKSLSRNSS-CQSK 70
           ER+IISAPTTPLGSS ++ VDESFFAN+   FSR+  RRSKTPTPSP+S SRN+S  +SK
Sbjct: 66  ERHIISAPTTPLGSSNHKGVDESFFANMTNTFSRNQSRRSKTPTPSPRSYSRNASRRRSK 125

Query: 71  TPTSLSRNQNRRSNSDSKFL 90
           TPTSLS NQ+RRSNSD++FL
Sbjct: 126 TPTSLSTNQSRRSNSDTEFL 145

[Close]

BLAST of Lag0000502 vs. NCBI nr
Match: XP_008449405.1 (PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis melo] >KAA0057342.1 dnaJ-like protein subfamily B member 1 [Cucumis melo var. makuwa] >TYK13395.1 dnaJ-like protein subfamily B member 1 [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 6.1e-18
Identity = 68/124 (54.84%), Postives = 83/124 (66.94%), Query Frame = 0


Query: 6   AHGKNERYIISAPTTPLGSSPNQSVDESFFANILRAFSRSNIRRSKTP------------ 65
           ++G+NE YII++PTTPLGS+ NQSVD+SFFANI R  SRS+ RRSKTP            
Sbjct: 52  SNGRNETYIINSPTTPLGSNHNQSVDDSFFANISRTISRSSSRRSKTPTPSPRSLSRNTS 111

Query: 66  ----TPSPKSLSRNSSCQSKTPTSLSRNQNRRSNSDSKFLEATTIEEGENHSRGRERVAE 114
               TPSP+SLSRN+S +S TPTSLSR + RRSNSD +FL         N SR R  V+E
Sbjct: 112 RRSTTPSPRSLSRNASRRSTTPTSLSREEKRRSNSDLEFLREPI---SRNFSR-RTDVSE 171

[Close]

BLAST of Lag0000502 vs. NCBI nr
Match: XP_038887512.1 (dnaJ homolog subfamily B member 1-like [Benincasa hispida])

HSP 1 Score: 101.3 bits (251), Expect = 6.1e-18
Identity = 70/131 (53.44%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 6   AHGKNERYIISAPTTPLGSSPNQSVDESFFANILRAFSRSNIRRSK-------------- 65
           ++G+ E YIIS+PTTPLGSS +Q+VDESFFANI R+FSRSN RRSK              
Sbjct: 50  SNGRKETYIISSPTTPLGSSQHQNVDESFFANISRSFSRSNSRRSKTPTPSPRSLSRNTS 109

Query: 66  ----TPTPSPKSLSRNSSCQSKTPTSLSRNQNRRSNSDSKFLEATTIEEGENHSRGRERV 119
               TPTPSP+SLSRN+S +S TPTSLSR++ RRSNSDS+FL+    E        R  V
Sbjct: 110 RRSTTPTPSPRSLSRNASRRSTTPTSLSRDEKRRSNSDSEFLK----EPISRIFSRRTDV 169

[Close]

BLAST of Lag0000502 vs. NCBI nr
Match: XP_022158893.1 (serine/arginine repetitive matrix protein 2-like [Momordica charantia])

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-17
Identity = 63/101 (62.38%), Postives = 74/101 (73.27%), Query Frame = 0


Query: 11  ERYIISAPTTPLGSSPNQSVDESFFANILRAFSRSNIRRSKTPTPSPKSLSRNSS-CQSK 70
           ER+IISAPTTPLGSS ++ VDESFFAN+   FSR+  RRSKTPTPSP+S SRN+S  +SK
Sbjct: 66  ERHIISAPTTPLGSSNHKGVDESFFANMTNTFSRNQSRRSKTPTPSPRSYSRNASRRRSK 125

Query: 71  TPTSLSRNQNRRSNSDSKFLEATTIEEGENHSRGRERVAEN 111
           TPTSLS NQ+RRSNSD++FL         N SR  E    N
Sbjct: 126 TPTSLSTNQSRRSNSDTEFLRRPL---SRNSSRKVEAAESN 163

The following BLAST results are available for this feature:

BLAST of Lag0000502 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657541.1	7.2e-19	62.00	dnaJ homolog subfamily B member 4 [Cucumis sativus] >KGN47935.1 hypothetical pro...	[more]
XP_022158903.1	2.1e-18	72.50	uncharacterized protein LOC111025360 [Momordica charantia]	[more]
XP_008449405.1	6.1e-18	54.84	PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis melo] >KAA0057342.1 dnaJ-l...	[more]
XP_038887512.1	6.1e-18	53.44	dnaJ homolog subfamily B member 1-like [Benincasa hispida]	[more]
XP_022158893.1	1.4e-17	62.38	serine/arginine repetitive matrix protein 2-like [Momordica charantia]	[more]

BLAST of Lag0000502 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000502.1	Lag0000502.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051085	chaperone cofactor-dependent protein refolding
cellular_component	GO:0005829	cytosol
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0051082	unfolded protein binding