Lag0000500 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000500
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionMDIS1-interacting receptor like kinase 2-like
Locationchr4: 9012286 .. 9012847 (+)
RNA-Seq ExpressionLag0000500
SyntenyLag0000500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATCTTCAAATCCATCTTGTCTTTGGTGTTTTCTTTGTGCTTTGTTTGTGTAAGAGCAAGGGTTGGTGGTTCAACATTGTCTCCACTTGAACTGGAAGCCGCTGCTATTCTGAATAGTGGATGGTGGCTCGATCAAAATGTGGAAGGGCATAGTTTGTGACAATGCTACCGGAAGCATCGTGGAACTTGAGGTAAAGAATCTACTCTACAAAATTTCAATTTTTCATTTTTACCCATAATCTCAAGTATTTTCGTGTCCACAAAGCTAGTTTACAAGGAAGAATTCCTCTTGAAATAGCCCATCTCTCCAACCTCACCATTCTGGCCTTAACATTCAATAATCTTAAGGTGAGTTGGCTCTAGAGATAGGAAATTTGAAGAATCTGTGGTACCTACATCTAACTCATAACATGCTTACTGGTAGAATTCCCTCAACTATAGGTCGTCATTTAACCAATCTGACGGTTCTAGCTCTTTCTCAAAATCAATCAATGGCCCGTTCCCTTCCACTCTCTGGCATTTACCCAAGTTACAATATATCTAAGCCTTTCGGATAA

mRNA sequence

ATGGCAATCTTCAAATCCATCTTGTCTTTGGTGTTTTCTTTGTGCTTTGTTTGTGTAAGAGCAAGGGTTGGTGGTTCAACATTGTCTCCACTTGAACTGGAAGCCGCTGCTATTCTGAATAGTGGATGGTGGCTCGATCAAAATGTGGAAGGGCATAGTGAGTTGGCTCTAGAGATAGGAAATTTGAAGAATCTGTGGTACCTACATCTAACTCATAACATGCTTACTGGTAGAATTCCCTCAACTATAGGTCGTCATTTAACCAATCTGACGGTTCTAGCTCTTTCTCAAAATCAATCAATGGCCCGTTCCCTTCCACTCTCTGGCATTTACCCAAGTTACAATATATCTAAGCCTTTCGGATAA

Coding sequence (CDS)

ATGGCAATCTTCAAATCCATCTTGTCTTTGGTGTTTTCTTTGTGCTTTGTTTGTGTAAGAGCAAGGGTTGGTGGTTCAACATTGTCTCCACTTGAACTGGAAGCCGCTGCTATTCTGAATAGTGGATGGTGGCTCGATCAAAATGTGGAAGGGCATAGTGAGTTGGCTCTAGAGATAGGAAATTTGAAGAATCTGTGGTACCTACATCTAACTCATAACATGCTTACTGGTAGAATTCCCTCAACTATAGGTCGTCATTTAACCAATCTGACGGTTCTAGCTCTTTCTCAAAATCAATCAATGGCCCGTTCCCTTCCACTCTCTGGCATTTACCCAAGTTACAATATATCTAAGCCTTTCGGATAA

Protein sequence

MAIFKSILSLVFSLCFVCVRARVGGSTLSPLELEAAAILNSGWWLDQNVEGHSELALEIGNLKNLWYLHLTHNMLTGRIPSTIGRHLTNLTVLALSQNQSMARSLPLSGIYPSYNISKPFG
Homology
BLAST of Lag0000500 vs. NCBI nr
Match: XP_030948258.1 (probable leucine-rich repeat receptor-like protein kinase At1g35710 [Quercus lobata])

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-05
Identity = 34/67 (50.75%), Postives = 51/67 (76.12%), Query Frame = 0

Query: 41  SGWWLDQNVEGHSELALEIGNLKNLWYLHLTHNMLTGRIPSTIGRHLTNLTVLALSQNQS 100
           +G +LD N + +  + LEIGN+K+L YL+L++N + G IPSTIG HLTNL+ L+LS NQ 
Sbjct: 249 TGLYLDSN-QFNGSIPLEIGNMKSLTYLNLSNNNIFGEIPSTIG-HLTNLSYLSLSWNQ- 308

Query: 101 MARSLPL 108
           ++ S+P+
Sbjct: 309 ISGSIPV 312

BLAST of Lag0000500 vs. NCBI nr
Match: XP_042518509.1 (probable leucine-rich repeat receptor-like protein kinase At1g35710 [Macadamia integrifolia])

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-04
Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = 0

Query: 19  VRARVGGSTLS---PLELEAAAILNSGWWLDQNVEGHSELALEIGNLKNLWYLHLTHNML 78
           +R  +G + LS   P  L   + LN  +  D ++ G   + +EIGN+ NL+ LHL++N+L
Sbjct: 298 IRLDLGNNNLSGSFPASLRNLSKLNIIYIFDNSLSG--SIPIEIGNITNLYELHLSNNLL 357

Query: 79  TGRIPSTIGRHLTNLTVLALSQNQSMARSLPLS 109
           TG IP  IG +L +LT+L L+ N S+  S+P S
Sbjct: 358 TGSIPPEIG-NLRSLTLLGLA-NNSLNGSIPAS 386

BLAST of Lag0000500 vs. NCBI nr
Match: RMZ49007.1 (hypothetical protein EB821_04625, partial [Candidatus Marinimicrobia bacterium PRS2])

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-04
Identity = 40/89 (44.94%), Postives = 47/89 (52.81%), Query Frame = 0

Query: 30  PLELEAAAILNSGWWLDQNVEGHSELALEIGNLKNLWYLHLTHNMLTGRIPSTIGRHLTN 89
           PLE+     L   +  D    G  E+ +EIGNL NL YL L  N LTG IPS IG +LTN
Sbjct: 58  PLEIGNLTNLTYLYLGDNQFTG--EIPIEIGNLTNLQYLSLFGNQLTGEIPSEIG-YLTN 117

Query: 90  LTVLALSQNQSMARSLP-------LSGIY 112
           LTVL L  NQ      P       L+G+Y
Sbjct: 118 LTVLGLQHNQLTGEIPPEIWELTNLTGLY 143

BLAST of Lag0000500 vs. NCBI nr
Match: XP_027066160.1 (probable leucine-rich repeat receptor-like protein kinase At1g35710 isoform X1 [Coffea arabica])

HSP 1 Score: 55.5 bits (132), Expect = 3.8e-04
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 0

Query: 52  HSELALEIGNLKNLWYLHLTHNMLTGRIPSTIGRHLTNLTVLALSQNQSMARSLPL 108
           H  +  EIGNLKNL YL+L  N LTG+IPST+G +LT LT L LS NQ ++ S+PL
Sbjct: 519 HGSVPPEIGNLKNLKYLNLAFNYLTGQIPSTLG-NLTALTSLILSSNQ-ISCSIPL 572

BLAST of Lag0000500 vs. NCBI nr
Match: KAG7964610.1 (hypothetical protein I3843_09G179000 [Carya illinoinensis])

HSP 1 Score: 55.5 bits (132), Expect = 3.8e-04
Identity = 33/65 (50.77%), Postives = 39/65 (60.00%), Query Frame = 0

Query: 52  HSELALEIGNLKNLWYLHLTHNMLTGRIPSTIGRHLTNLTVLALSQNQSMARSLPLSGIY 111
           H  + LEIG LKNL YL L+ NML G IPSTIG HLTNL  L L +N+      P  G+ 
Sbjct: 132 HGRIPLEIGMLKNLTYLSLSKNMLVGPIPSTIG-HLTNLEYLYLGENKINGSIPPEIGML 191

Query: 112 PSYNI 117
            +  I
Sbjct: 192 KNLTI 195

BLAST of Lag0000500 vs. ExPASy Swiss-Prot
Match: Q9FRS6 (Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana OX=3702 GN=PXL1 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.0e-04
Identity = 31/62 (50.00%), Postives = 38/62 (61.29%), Query Frame = 0

Query: 46  DQNVEGHSELALEIGNLKNLWYLHLTHNMLTGRIPSTIGRHLTNLTVLALSQNQSMARSL 105
           D  + G  E+ +E+G LKNL  L+L  N LTG IPS I   L NL VL L QN S+  SL
Sbjct: 302 DNQITG--EIPMEVGELKNLQLLNLMRNQLTGIIPSKIA-ELPNLEVLELWQN-SLMGSL 359

Query: 106 PL 108
           P+
Sbjct: 362 PV 359

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030948258.12.6e-0550.75probable leucine-rich repeat receptor-like protein kinase At1g35710 [Quercus lob... [more]
XP_042518509.12.9e-0439.78probable leucine-rich repeat receptor-like protein kinase At1g35710 [Macadamia i... [more]
RMZ49007.12.9e-0444.94hypothetical protein EB821_04625, partial [Candidatus Marinimicrobia bacterium P... [more]
XP_027066160.13.8e-0458.93probable leucine-rich repeat receptor-like protein kinase At1g35710 isoform X1 [... [more]
KAG7964610.13.8e-0450.77hypothetical protein I3843_09G179000 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
Q9FRS64.0e-0450.00Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana OX... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 17..116
e-value: 6.4E-11
score: 44.2
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 54..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000500.1Lag0000500.1mRNA