Lag0000499 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000499
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr4: 9000711 .. 9005135 (+)
RNA-Seq ExpressionLag0000499
SyntenyLag0000499
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCGATCTGGGTCGTTTTTCGGTGTTTCTCGGTGAGCTTTAGCAATGGGTAAGTGAGGAAAATCAATTTTTGGTTGATTAAAGCGATTTAGAGGAATACCCATTGATGTTAGCTCTTTTTTCAAGGTACCCTTAATGTTTGATGGTTGAATTGTCGAATTGAAGCAGAATTGAAGCCCCGGACAGCAAGCATAGGTTCTATTTTGGGTAAGTTTTGGGTGTTAATTTCACCAAATATCTTATATTTTTGCCTTTTGATTAATTTCCCCAAGTTCCTTGGAGTTCTACTTGCAATCTTCAACAATAGAACAAATATCTTATATTTTTGCCTTCAATTACTGTCATAGCTATTCTTTAGTTTTTGAATTCTATGCTCTGTCAAGTTTCTTTATCTTACTGCATTATTGATTAGTCTCGATCATATCTTGATGTAGCCTGGAGAATCTCTTAGGGAGTTCTATAAACGTACAAATCTCTACTGGCAAATGGCAACACATGAGCATACACAATATACTGGAAAGGTATGATAATTTTTTCTCATCTAAAAAGTTGATTCCACTCTTCTCTTCTCATCTAAAAGGGTCAGCTAACTTTGGTCAAATAATAGTAGTGTTGAATGAATTCTCTCTGCTATGAATCTCTGATCTAATTAAAGGAAATCATATGGCTCTATTGTTCCAAATGATTTTATGTACATCACCCCGTTTAATTTAAGATGAAAAAGTATGGGGACATTTCGAATTCTTGGAACATTACAGGCAGGATAATGGACAATATGTAACTAGGATTAATATATGGATGTGTTCCCCATTATGCTTTGTCCCTAACCAAAATTTAGGTTCTCAATACTTAATTCCACCTTGCTTTTAGATAATGATTTTCATAAAGGAAAGAGGGATAAATGCATTTTTCTGATAGAGCTAATAGAAACCGGGGGCTCAAGTGCGAACAATTTTTATCAACAAAATAGGACCAAAAACCAATTTTCTTGTCCTTTCAGGAAATTTTCTAATTTCAGTAGGAGGTATGGTTATACATTTGTGGCTTAGATTTCCCTGCTCTTTCTAATTTCAGGAAAAAAAATTGGTGGCAGAGATGAAGCAAACTGCCAAAACTGGGAATGAGGCAAGTTAACTTTCTTATATGTACGGGTAGATATAGCTTCATATTTAGTACTTTGCCCCTTCCAAAACTGTCAACCATGTTAATCTTCTTTTATGGAATGTTCCCCTAGTTAGTTATTCATGATTCCAAGGCTTCAAATTAGTAGCAGTGTATGTGGGCATTGTTTGTGATTAATTTTCTTCTATATACTTTCATGATTGCTGGTTGGTTTCATATATATATTTTTTAAAAATGCTTATGGGAGTCTAATGTAATGTTCCTTCTTAGGTGCTTGAAAAAGTGCATGGAGATCTAATTGGGACAACATTATTTAGAAACAAATACTACCCCCACTCATGCTCTTTTGATAATTAACACAGGTAATTTTGTTTGAAGTTACATTTTTTTTCCAGTATTTTAATATATGTTATTTGCTTGAAGTTATATATATAGGCTGAAGAGTTATTTATTAGATCAATCTCATGTTCAATTGGAATCTAAATAATATTAGTTTATGTTTTTTTGTTGCTATTTTCTGTTGAGAATTGCTATAGAGGTCAAGTGAATGAAATTTTATTGGTGGTTGTGCAATTGTTAACTGCATGGAATTCGAGAGTGCACCATGTTTAGAACTATGTGTTAGTAGAAGCACTATGATAGGTTTAAGACTTGTTATTTAGTATGATGTTCTAAAGTTTATTCAATTCATCACTATTCTTGAAACTCGTCTCTAATTTCTCATGCATTGTTTTTCATGTAATGTGATACTTACACACTTCTTGTAGTTCAAATTTTATGGCTTACATAGTACATGTTGTCTAACTAATTTGCTTTTAGAAAGTTGTAATTACATGCACAATTTTTATAGTGCATGGTTAAGAGAAAAGCTTCTATCTAAGATATTTACATCAAATATCATATGAGTTGGAAGGTTTAAAACCAATCGGTGGGTGACACATCGGAAATAAACCATGGTGGGGGCTGGGAGTTTATTTGTGGATGTACCCTTAATAGTATTGCGATAGTTGGTTTTGAATTAACTTTGTTTCATGGTTTCTCTCTTAGTTATGTTCCTGAGTTATGAATGAGGAGTCTTTTCCACATTTTCCACATTTTCGAAATTGCTTTTGTTGCTTTAATTTTATCTATATTTTGGAGCAAATATGCTTGTGTTATGCATTTTAGGTATGTGAAAGATCTCTTAACAATACTCATAATGGTCCAAGGTCATAATGGTCCAAGTATGCCTCCAGTAAAAAACTTTGTAAGAGTAGAAATGCTACCAAGTGGGTATTTGATAAGACTTTGTGAAGGTGGCAGTTCCATAATCGATATCGTTGATCGCATGGACTTAGAAGTATGTAAAACTTCTTTGTATTTAAAGCAGTCATTCTTAGTCTCTGATTTCCAAATTTATAATTTTACCAATTGTTTACTTGAAAATAGCCTTGGAGCGTGTCATAAGTGTTGCAGCAATTATACAAGTCGTCTACTCTGCTGCTCAAAAGCATGTCAGTTGATATGTTCCTAAGTTTTGATGAGCTTAGTTTAATTTTTATATTCACGTTTTGATAACTTTAATAATTCGTGTTAGTTTTTTATGAGTCTAATATTTGTGTCCATTTTAAGTTTGGTTGTTATGTTCTTAAGTTTTTCTAAGTTTTGTTTAATTGTTATGTTCATGATTTTTTATAAGTTATTTAAGAGTTTGATATTTATATTCAATAAAGTTTTATAACTTTAGTTGTTTGCGTTAATTTGATGAGTTTAGTTGTCTATGTTTCTTTGAGTATATGCTATTCATACCTCAAATCTTAAATCTCACCTTATTTGCATTGTTTCTTATGTGTCAGATTTGTTGTTTCTATGTCTCGCCAATGACTTCAAGTACAAATTGCACCACGTTCAATCAACTTTCAAAGAGTTATAAGTTTGTTGTTGTGTACTATTTGTCATAGGCCAAAACCAAAGCAAAGGAGAAGCTCCTTGCCAAGGAAGCTGCTCAAAGGGTGCTAAGTGATCGTTTTGAGTTTAGATGGTTTCGTTTAGTTTTTGTCTGTATAACTTTGAATATGCAAGTTTAGTTGTTTGTTGGAGTTTGAGATATACATTGTTTTTTTTTTTTTTTGGAATGAATGCATAATTTTTTGGTTAATGAAATCTATTATCTCATTATGATTTCACGTTTGGTTGAAATTATGATTCATTTGATTTTATATTTCTATATGAACAATAATGTGTTTGTTACGAGATTTGACTTGTACTATTTATACTTGAGTTTTGGTGTTAGCTTCATATAATGTATTAAACATATTATGTTATTGTCAAGTGAAGTGAAGGTTGTGATCTGGGTTTAAAAGTGCATATTTCTGTTTTTCAGGTACCCAAAAATGTTGTCGTTAGTAATGCCCTCTATATTATGTTGAATTTTGGAGACATTACAATTGGTGGCTAGCTACTATTGTGTAAATGCAGGTTGCAATGCAGGGGTAAAAACCAACATGAGGTTTTATTTTTTTTTATTTTTTTTTTTCCAAATACGTATAGTTGATGGTTAAAAAACGTCAAAACAAACACCATAATTGACATATTTTAACCGTCAATGAAAATACACAATTTGACAATTTAATACGGTAACTTGACGGCTAATAAACGTCAACATAAGTTTATATTGACAGTTTATAGATATCAATGAATATGGCAACATTGACGCTTTATGGATATCATTGACGAATAAAACGTGTCAATAATATGATTTGTTGATGGCTAGTAAATGTCAACAAAGGTGCCTACGTTGACGCTTTATGAATATCATTGACGGATAAAACGTGTCAATAATGTCTTTGTTGATGGCTTATAAACGTCAATAATGACATCTTCGTTGACGTCCTATAAGCGTCAATGAAAACAGTAATATTGACGCTTTAGTTTTATTGATACCACTTCAATTGACTTCTAAAAAGCGTCAATAAAAGTGATAGTTGATACTTTTTAGCCGTCAACAAAGACCAAATTTGTAGTAGTGAGACCGTTGGAATTTTGCAAGAGGATGCAACTGTGATCCATGTGGATAATAAGTCAACAATTGCTCTAGCCAAGAATCCAGTGTTTAATGATCGCAGTAAGCACATTGATACAAGATTTCACTTTATTAGAGATTGCATTTCAAGAAAGAAGATTCAAGTAGAATATGTGAAGACAGAAGATCAAATTGCAGATATTTTCACAAAGCCACTTAAGGTCGATGTGTTTAGCAAGTTGAGAACTTTGCTCGGAGTTTTGAGAAAAACATGTTTAAGGGAGGATGTTGTAAGTTAA

mRNA sequence

ATGTTGCGATCTGGGTCGTTTTTCGGTGTTTCTCGAATTGAAGCCCCGGACAGCAAGCATAGGTTCTATTTTGGCCTGGAGAATCTCTTAGGGAGTTCTATAAACGTACAAATCTCTACTGGCAAATGGCAACACATGAGCATACACAATATACTGGAAAGGTATGTGAAAGATCTCTTAACAATACTCATAATGGTCCAAGGTCATAATGGTCCAAGTATGCCTCCAGTAAAAAACTTTGTAAGAGTAGAAATGCTACCAAGTGGGTATTTGATAAGACTTTGTGAAGGTGGCAGTTCCATAATCGATATCGTTGATCGCATGGACTTAGAAGCCAAAACCAAAGCAAAGGAGAAGCTCCTTGCCAAGGAAGCTGCTCAAAGGGTGCTAAGTGATCGTTTTGAGTTTAGATGGTTTCGTTTAGTTTTTGTCTGTATAACTTTGAATATGCAAGTACCCAAAAATGTTGTCGTTAGTAATGCCCTCTATATTATGTTGAATTTTGGAGACATTACAATTGCCGTCAACAAAGACCAAATTTGTAGTAGTGAGACCGTTGGAATTTTGCAAGAGGATGCAACTGTGATCCATGTGGATAATAAGTCAACAATTGCTCTAGCCAAGAATCCAGTGTTTAATGATCGCAGTAAGCACATTGATACAAGATTTCACTTTATTAGAGATTGCATTTCAAGAAAGAAGATTCAAGTAGAATATGTGAAGACAGAAGATCAAATTGCAGATATTTTCACAAAGCCACTTAAGGTCGATGTGTTTAGCAAGTTGAGAACTTTGCTCGGAGTTTTGAGAAAAACATGTTTAAGGGAGGATGTTGTAAGTTAA

Coding sequence (CDS)

ATGTTGCGATCTGGGTCGTTTTTCGGTGTTTCTCGAATTGAAGCCCCGGACAGCAAGCATAGGTTCTATTTTGGCCTGGAGAATCTCTTAGGGAGTTCTATAAACGTACAAATCTCTACTGGCAAATGGCAACACATGAGCATACACAATATACTGGAAAGGTATGTGAAAGATCTCTTAACAATACTCATAATGGTCCAAGGTCATAATGGTCCAAGTATGCCTCCAGTAAAAAACTTTGTAAGAGTAGAAATGCTACCAAGTGGGTATTTGATAAGACTTTGTGAAGGTGGCAGTTCCATAATCGATATCGTTGATCGCATGGACTTAGAAGCCAAAACCAAAGCAAAGGAGAAGCTCCTTGCCAAGGAAGCTGCTCAAAGGGTGCTAAGTGATCGTTTTGAGTTTAGATGGTTTCGTTTAGTTTTTGTCTGTATAACTTTGAATATGCAAGTACCCAAAAATGTTGTCGTTAGTAATGCCCTCTATATTATGTTGAATTTTGGAGACATTACAATTGCCGTCAACAAAGACCAAATTTGTAGTAGTGAGACCGTTGGAATTTTGCAAGAGGATGCAACTGTGATCCATGTGGATAATAAGTCAACAATTGCTCTAGCCAAGAATCCAGTGTTTAATGATCGCAGTAAGCACATTGATACAAGATTTCACTTTATTAGAGATTGCATTTCAAGAAAGAAGATTCAAGTAGAATATGTGAAGACAGAAGATCAAATTGCAGATATTTTCACAAAGCCACTTAAGGTCGATGTGTTTAGCAAGTTGAGAACTTTGCTCGGAGTTTTGAGAAAAACATGTTTAAGGGAGGATGTTGTAAGTTAA

Protein sequence

MLRSGSFFGVSRIEAPDSKHRFYFGLENLLGSSINVQISTGKWQHMSIHNILERYVKDLLTILIMVQGHNGPSMPPVKNFVRVEMLPSGYLIRLCEGGSSIIDIVDRMDLEAKTKAKEKLLAKEAAQRVLSDRFEFRWFRLVFVCITLNMQVPKNVVVSNALYIMLNFGDITIAVNKDQICSSETVGILQEDATVIHVDNKSTIALAKNPVFNDRSKHIDTRFHFIRDCISRKKIQVEYVKTEDQIADIFTKPLKVDVFSKLRTLLGVLRKTCLREDVVS
Homology
[Close]
BLAST of Lag0000499 vs. NCBI nr
Match: TYK12247.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 170.2 bits (430), Expect = 2.5e-38
Identity = 85/96 (88.54%), Postives = 93/96 (96.88%), Query Frame = 0 

Query: 184  ETVGILQEDATVIHVDNKSTIALAKNPVFNDRSKHIDTRFHFIRDCISRKKIQVEYVKTE 243
            +TVGILQED TVIH+DNKSTIALAKNPVF+DRSKHIDTRFHFIRDCISRK++QVEYVKTE
Sbjct: 924  KTVGILQEDPTVIHIDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTE 983

Query: 244  DQIADIFTKPLKVDVFSKLRTLLGV-LRKTCLREDV 279
            DQIADIFTKPLKV+VF+ LRTLLGV L+KTCLREDV
Sbjct: 984  DQIADIFTKPLKVNVFNNLRTLLGVFLKKTCLREDV 1019

[Close]
BLAST of Lag0000499 vs. NCBI nr
Match: KAA0046907.1 (T26F17.17 [Cucumis melo var. makuwa])

HSP 1 Score: 168.7 bits (426), Expect = 7.1e-38
Identity = 85/97 (87.63%), Postives = 92/97 (94.85%), Query Frame = 0 

Query: 184 ETVGILQEDATVIHVDNKSTIALAKNPVFNDRSKHIDTRFHFIRDCISRKKIQVEYVKTE 243
           +TVGILQED TVIHVDNKSTIALAKNPVF+DRSKHIDTRFHFIRDCISRK++QVEYVKTE
Sbjct: 487 KTVGILQEDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTE 546

Query: 244 DQIADIFTKPLKVDVFSKLRTLLGVL--RKTCLREDV 279
           DQIADIFTKPLKV+VF+ LRTLLGV   +KTCLREDV
Sbjct: 547 DQIADIFTKPLKVNVFNNLRTLLGVFQNKKTCLREDV 583

[Close]
BLAST of Lag0000499 vs. NCBI nr
Match: TYK21979.1 (putative copia-type polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 3.5e-37
Identity = 84/97 (86.60%), Postives = 91/97 (93.81%), Query Frame = 0 

Query: 184 ETVGILQEDATVIHVDNKSTIALAKNPVFNDRSKHIDTRFHFIRDCISRKKIQVEYVKTE 243
           +TVGILQED TVIHVDNKSTIALAKNPVF+DRSKHIDTRFHFIRDCISRK++QVEYVKTE
Sbjct: 405 KTVGILQEDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTE 464

Query: 244 DQIADIFTKPLKVDVFSKLRTLLGVL--RKTCLREDV 279
           DQIADI TKPLKV+VF+ LRTLLGV   +KTCLREDV
Sbjct: 465 DQIADILTKPLKVNVFNNLRTLLGVFQNKKTCLREDV 501

[Close]
BLAST of Lag0000499 vs. NCBI nr
Match: KAA0032986.1 (putative copia-type polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 3.5e-37
Identity = 84/97 (86.60%), Postives = 91/97 (93.81%), Query Frame = 0 

Query: 184 ETVGILQEDATVIHVDNKSTIALAKNPVFNDRSKHIDTRFHFIRDCISRKKIQVEYVKTE 243
           +TVGILQED TVIHVDNKSTIALAKNPVF+DRSKHIDTRFHFIRDCISRK++QVEYVKTE
Sbjct: 405 KTVGILQEDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTE 464

Query: 244 DQIADIFTKPLKVDVFSKLRTLLGVL--RKTCLREDV 279
           DQIADI TKPLKV+VF+ LRTLLGV   +KTCLREDV
Sbjct: 465 DQIADILTKPLKVNVFNNLRTLLGVFQNKKTCLREDV 501

[Close]
BLAST of Lag0000499 vs. NCBI nr
Match: KAA0047979.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 165.2 bits (417), Expect = 7.9e-37
Identity = 83/97 (85.57%), Postives = 91/97 (93.81%), Query Frame = 0 

Query: 184  ETVGILQEDATVIHVDNKSTIALAKNPVFNDRSKHIDTRFHFIRDCISRKKIQVEYVKTE 243
            +TV ILQED TVIH+DNKSTIALAKNPVF+DRSKHIDTRFHFIRDCISRK++QVEYVKTE
Sbjct: 1246 KTVEILQEDPTVIHIDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTE 1305

Query: 244  DQIADIFTKPLKVDVFSKLRTLLGVL--RKTCLREDV 279
            DQIADIFTKPLKV+VF+ LRTLLGV   +KTCLREDV
Sbjct: 1306 DQIADIFTKPLKVNVFNNLRTLLGVFQNKKTCLREDV 1342

[Close]
BLAST of Lag0000499 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 75.9 bits (185), Expect = 8.3e-13
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 0 

Query: 185  TVGILQEDATVIHVDNKSTIALAKNPVFNDRSKHIDTRFHFIRDCISRKKIQVEYVKTED 244
            ++ I  E+   I+ DN+  I++A NP  + R+KHID ++HF R+ +    I +EY+ TE+
Sbjct: 1317 SINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTEN 1376

Query: 245  QIADIFTKPLKVDVFSKLRTLLGVLR 271
            Q+ADIFTKPL    F +LR  LG+L+
Sbjct: 1377 QLADIFTKPLPAARFVELRDKLGLLQ 1402

[Close]
BLAST of Lag0000499 vs. ExPASy Swiss-Prot
Match: Q9ZU11 (Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana OX=3702 GN=ATHB-15 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-11
Identity = 34/43 (79.07%), Postives = 36/43 (83.72%), Query Frame = 0 

Query: 70  NGPSMPPVKNFVRVEMLPSGYLIRLCEGGSSIIDIVDRMDLEA 113
           NGPSMP V+NFVR EML SGYLIR C+GG SII IVD MDLEA
Sbjct: 296 NGPSMPLVQNFVRAEMLSSGYLIRPCDGGGSIIHIVDHMDLEA 338

[Close]
BLAST of Lag0000499 vs. ExPASy Swiss-Prot
Match: Q39123 (Homeobox-leucine zipper protein ATHB-8 OS=Arabidopsis thaliana OX=3702 GN=ATHB-8 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-10
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 70  NGPSMPPVKNFVRVEMLPSGYLIRLCEGGSSIIDIVDRMDLE 112
           NGPSMPP  +FVR E+LPSGYLIR CEGG SI+ IVD  DLE
Sbjct: 295 NGPSMPPSPHFVRAEILPSGYLIRPCEGGGSILHIVDHFDLE 336

[Close]
BLAST of Lag0000499 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.5e-10
Identity = 38/92 (41.30%), Postives = 50/92 (54.35%), Query Frame = 0 

Query: 180  ICSSET-VGILQEDATVIHVDNKSTIALAKNPVFNDRSKHIDTRFHFIRDCISRKKIQVE 239
            ICS  T +GI      VI+ DN     L  NPVF+ R KHI   +HFIR+ +    ++V 
Sbjct: 1371 ICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVV 1430

Query: 240  YVKTEDQIADIFTKPLKVDVFSKLRTLLGVLR 271
            +V T DQ+AD  TKPL    F    + +GV R
Sbjct: 1431 HVSTHDQLADTLTKPLSRTAFQNFASKIGVTR 1462

[Close]
BLAST of Lag0000499 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-09
Identity = 37/92 (40.22%), Postives = 50/92 (54.35%), Query Frame = 0 

Query: 180  ICSSET-VGILQEDATVIHVDNKSTIALAKNPVFNDRSKHIDTRFHFIRDCISRKKIQVE 239
            ICS  T +GI      VI+ DN     L  NPVF+ R KHI   +HFIR+ +    ++V 
Sbjct: 1354 ICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVV 1413

Query: 240  YVKTEDQIADIFTKPLKVDVFSKLRTLLGVLR 271
            +V T DQ+AD  TKPL    F      +GV++
Sbjct: 1414 HVSTHDQLADTLTKPLSRVAFQNFSRKIGVIK 1445

[Close]
BLAST of Lag0000499 vs. ExPASy TrEMBL
Match: A0A5D3CJX7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00560 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.2e-38
Identity = 85/96 (88.54%), Postives = 93/96 (96.88%), Query Frame = 0 

Query: 184  ETVGILQEDATVIHVDNKSTIALAKNPVFNDRSKHIDTRFHFIRDCISRKKIQVEYVKTE 243
            +TVGILQED TVIH+DNKSTIALAKNPVF+DRSKHIDTRFHFIRDCISRK++QVEYVKTE
Sbjct: 924  KTVGILQEDPTVIHIDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTE 983

Query: 244  DQIADIFTKPLKVDVFSKLRTLLGV-LRKTCLREDV 279
            DQIADIFTKPLKV+VF+ LRTLLGV L+KTCLREDV
Sbjct: 984  DQIADIFTKPLKVNVFNNLRTLLGVFLKKTCLREDV 1019

[Close]
BLAST of Lag0000499 vs. ExPASy TrEMBL
Match: A0A5A7TYB6 (T26F17.17 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00710 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.5e-38
Identity = 85/97 (87.63%), Postives = 92/97 (94.85%), Query Frame = 0 

Query: 184 ETVGILQEDATVIHVDNKSTIALAKNPVFNDRSKHIDTRFHFIRDCISRKKIQVEYVKTE 243
           +TVGILQED TVIHVDNKSTIALAKNPVF+DRSKHIDTRFHFIRDCISRK++QVEYVKTE
Sbjct: 487 KTVGILQEDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTE 546

Query: 244 DQIADIFTKPLKVDVFSKLRTLLGVL--RKTCLREDV 279
           DQIADIFTKPLKV+VF+ LRTLLGV   +KTCLREDV
Sbjct: 547 DQIADIFTKPLKVNVFNNLRTLLGVFQNKKTCLREDV 583

[Close]
BLAST of Lag0000499 vs. ExPASy TrEMBL
Match: A0A5D3DF53 (Putative copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G00090 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.7e-37
Identity = 84/97 (86.60%), Postives = 91/97 (93.81%), Query Frame = 0 

Query: 184 ETVGILQEDATVIHVDNKSTIALAKNPVFNDRSKHIDTRFHFIRDCISRKKIQVEYVKTE 243
           +TVGILQED TVIHVDNKSTIALAKNPVF+DRSKHIDTRFHFIRDCISRK++QVEYVKTE
Sbjct: 405 KTVGILQEDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTE 464

Query: 244 DQIADIFTKPLKVDVFSKLRTLLGVL--RKTCLREDV 279
           DQIADI TKPLKV+VF+ LRTLLGV   +KTCLREDV
Sbjct: 465 DQIADILTKPLKVNVFNNLRTLLGVFQNKKTCLREDV 501

[Close]
BLAST of Lag0000499 vs. ExPASy TrEMBL
Match: A0A5A7SSL5 (Putative copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G00730 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.7e-37
Identity = 84/97 (86.60%), Postives = 91/97 (93.81%), Query Frame = 0 

Query: 184 ETVGILQEDATVIHVDNKSTIALAKNPVFNDRSKHIDTRFHFIRDCISRKKIQVEYVKTE 243
           +TVGILQED TVIHVDNKSTIALAKNPVF+DRSKHIDTRFHFIRDCISRK++QVEYVKTE
Sbjct: 405 KTVGILQEDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTE 464

Query: 244 DQIADIFTKPLKVDVFSKLRTLLGVL--RKTCLREDV 279
           DQIADI TKPLKV+VF+ LRTLLGV   +KTCLREDV
Sbjct: 465 DQIADILTKPLKVNVFNNLRTLLGVFQNKKTCLREDV 501

[Close]
BLAST of Lag0000499 vs. ExPASy TrEMBL
Match: A0A5A7U3F3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00420 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.8e-37
Identity = 83/97 (85.57%), Postives = 91/97 (93.81%), Query Frame = 0 

Query: 184  ETVGILQEDATVIHVDNKSTIALAKNPVFNDRSKHIDTRFHFIRDCISRKKIQVEYVKTE 243
            +TV ILQED TVIH+DNKSTIALAKNPVF+DRSKHIDTRFHFIRDCISRK++QVEYVKTE
Sbjct: 1246 KTVEILQEDPTVIHIDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTE 1305

Query: 244  DQIADIFTKPLKVDVFSKLRTLLGVL--RKTCLREDV 279
            DQIADIFTKPLKV+VF+ LRTLLGV   +KTCLREDV
Sbjct: 1306 DQIADIFTKPLKVNVFNNLRTLLGVFQNKKTCLREDV 1342

[Close]
BLAST of Lag0000499 vs. TAIR 10
Match: AT1G52150.1 (Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein )

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-12
Identity = 34/43 (79.07%), Postives = 36/43 (83.72%), Query Frame = 0 

Query: 70  NGPSMPPVKNFVRVEMLPSGYLIRLCEGGSSIIDIVDRMDLEA 113
           NGPSMP V+NFVR EML SGYLIR C+GG SII IVD MDLEA
Sbjct: 296 NGPSMPLVQNFVRAEMLSSGYLIRPCDGGGSIIHIVDHMDLEA 338

[Close]
BLAST of Lag0000499 vs. TAIR 10
Match: AT1G52150.2 (Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein )

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-12
Identity = 34/43 (79.07%), Postives = 36/43 (83.72%), Query Frame = 0 

Query: 70  NGPSMPPVKNFVRVEMLPSGYLIRLCEGGSSIIDIVDRMDLEA 113
           NGPSMP V+NFVR EML SGYLIR C+GG SII IVD MDLEA
Sbjct: 296 NGPSMPLVQNFVRAEMLSSGYLIRPCDGGGSIIHIVDHMDLEA 338

[Close]
BLAST of Lag0000499 vs. TAIR 10
Match: AT1G52150.3 (Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein )

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-12
Identity = 34/43 (79.07%), Postives = 36/43 (83.72%), Query Frame = 0 

Query: 70  NGPSMPPVKNFVRVEMLPSGYLIRLCEGGSSIIDIVDRMDLEA 113
           NGPSMP V+NFVR EML SGYLIR C+GG SII IVD MDLEA
Sbjct: 296 NGPSMPLVQNFVRAEMLSSGYLIRPCDGGGSIIHIVDHMDLEA 338

[Close]
BLAST of Lag0000499 vs. TAIR 10
Match: AT4G32880.1 (homeobox gene 8 )

HSP 1 Score: 68.9 bits (167), Expect = 7.2e-12
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 70  NGPSMPPVKNFVRVEMLPSGYLIRLCEGGSSIIDIVDRMDLE 112
           NGPSMPP  +FVR E+LPSGYLIR CEGG SI+ IVD  DLE
Sbjct: 295 NGPSMPPSPHFVRAEILPSGYLIRPCEGGGSILHIVDHFDLE 336

[Close]
BLAST of Lag0000499 vs. TAIR 10
Match: AT2G34710.1 (Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein )

HSP 1 Score: 62.0 bits (149), Expect = 8.8e-10
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 71  GPSMPPVKNFVRVEMLPSGYLIRLCEGGSSIIDIVDRMDLEA 113
           GP+ PP  NFVR EM PSG+LIR C+GG SI+ IVD +DL+A
Sbjct: 310 GPTGPPSSNFVRAEMKPSGFLIRPCDGGGSILHIVDHVDLDA 351

The following BLAST results are available for this feature:
BLAST of Lag0000499 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK12247.12.5e-3888.54Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0046907.17.1e-3887.63T26F17.17 [Cucumis melo var. makuwa][more]
TYK21979.13.5e-3786.60putative copia-type polyprotein [Cucumis melo var. makuwa][more]
KAA0032986.13.5e-3786.60putative copia-type polyprotein [Cucumis melo var. makuwa][more]
KAA0047979.17.9e-3785.57Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
BLAST of Lag0000499 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P041468.3e-1343.02Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q9ZU111.6e-1179.07Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana OX=3702 GN=ATHB-... [more]
Q391231.0e-1073.81Homeobox-leucine zipper protein ATHB-8 OS=Arabidopsis thaliana OX=3702 GN=ATHB-8... [more]
Q94HW26.5e-1041.30Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT941.1e-0940.22Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
BLAST of Lag0000499 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CJX71.2e-3888.54Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7TYB63.5e-3887.63T26F17.17 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00710 PE=4... [more]
A0A5D3DF531.7e-3786.60Putative copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7SSL51.7e-3786.60Putative copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7U3F33.8e-3785.57Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
BLAST of Lag0000499 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G52150.11.1e-1279.07Homeobox-leucine zipper family protein / lipid-binding START domain-containing p... [more]
AT1G52150.21.1e-1279.07Homeobox-leucine zipper family protein / lipid-binding START domain-containing p... [more]
AT1G52150.31.1e-1279.07Homeobox-leucine zipper family protein / lipid-binding START domain-containing p... [more]
AT4G32880.17.2e-1273.81homeobox gene 8 [more]
AT2G34710.18.8e-1064.29Homeobox-leucine zipper family protein / lipid-binding START domain-containing p... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023393START-like domain superfamilyGENE3D3.30.530.20coord: 44..129
e-value: 1.7E-5
score: 26.7
IPR002913START domainPFAMPF01852STARTcoord: 72..113
e-value: 8.6E-8
score: 31.8
NoneNo IPR availablePANTHERPTHR11439:SF343SUBFAMILY NOT NAMEDcoord: 189..269
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 189..269
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 187..254
e-value: 3.24344E-35
score: 121.806
NoneNo IPR availableSUPERFAMILY55961Bet v1-likecoord: 62..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000499.1Lag0000499.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0008289 lipid binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding