Lag0000498 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000498
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	T3P18.3
Location	chr4: 8982355 .. 8987914 (-)
RNA-Seq Expression	Lag0000498
Synteny	Lag0000498

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACGTGTGCAGTGGTACCTAATTTCAGCAGCCCTCCTTTAAATCAGCTTTTAAATCAGAGAACGTTAATCAAGTTGGAAAGAGGTAATTATCTTTTGTGGAAAAATTTAGCTTTACCAATTCTTCGAGAATTTATCGCTTGGAAGGGCACTTGTCCGACGACAAGCCTTGTCCGACGACAAGCCTTGTCCGTCAAAGTTTCTCTCTACTCTTCAAGAAGTCACAGCAGTAGCTTCAAATGAAGCTGGCACGTGAAGCTCTGAAGTGTTGTTCTACCAGAAAACTCTGTTCACTCGTCAGCTGCAGCCCCTGTTATGAATCCGTAATATGAAAGCTGGCTGGCTGTAGACCTACTTCTTCTTGGTTGGCTTTACAACTCAATGACACCTGAGGTAGCAGCCCAAGTTATGGGGTATGGAAATGCAAGAGATCTTTGGATTGTTGTACAAGAACTATTCGAAATCAAGTCTCGAGTCGAAAAAGATTATCTTCGTCAGGTATTTCAACAGACTCGTAAAGGTTCTCTTAAAATGGCTAATTATTTGCGTGCTATGAGATCGAATGCAGATAACTTGGGTCAAGCGGGAAATTATGTTCCGGCTCACTCTCTAATTTCTCATGTCCTGCTAGGACTAGATGAGGAATTCGATGCTGTAGTAGCCATGATCCAAGGAAGAATCAAAATATCTTGGTCAGAAATGCAAGTTGAGTTGTTGATTTTTGAGAAAAGGCTGGGAATCTAAAACTCACAAAGGTCATTGATAACTCTCTAAAAGGGAGTTATTTATAGTCCTTTATTGATTGGTTTGTATGTTATTTTTGTCAATTAGATATGTTTGTTAGGTGAATTTATTATGTTTTAGTTTAATTATGAGAATTCATGCTTTGGAGTTTCTTTGTAGAGAAATATAAATGCTGAGAAGTGGAGGGAGCAAAGATCAATGATCCAACAAAATATTAGTAAAACGTTAAATGAAGAGGCATTCTAAGCAGAGATCTAGGAGTAATCAGGATGGAAAAACACTCCACATGCATTAGTTGACCTAATTAGGTCAAATCTCATCTTATAAAAGGAGGAGCCATAGAAAATCCATCTTGGACGCCAATTAGAAACCAAATTATCGATTGGAGACCTCTAGAAGACCAAAGTGTGATTTCTCTCAAGGGAGACGAAGTTCTTCCATGTTCTTGATGGTTTGGAGTAGCCATTTCAGCCTCATCAACTAGAAAATTAGTATTTCTTGTAGTAATTGCATAATGGATGTTTTTCATGAGATTGTAACGCTTTATGCTTTAGTATTTTTATCCAAATTCATGAACTAATCGCTTGTAGGCACATGTTAGGATCAATGTAGTTGATATTTATTTCAATTTTGGAAATTCTTATTGATTTGATCATCTTGAATTACATGTTGCTCTTTATTTCATTATGTGCCCGCTTGACCATTCGATATGTATAGTTTTCCTTAGTTTCAAGGATGATTTAGGGATTGTGTGGCATTAATTCATGCTAAACTGTAGATAGTTGGTGAACGCTAGTAGTTGAGTTAGGGATTACCAATTACCTAGTGCATGATCGGTAGAACTCCATTGAAGTTGAAACACATTCCCAAAAATTCGGAGTTTTGGGAGGACCCCGCTGATAAGACTACATGAGATTGATAAATCAAAAGAATTGTTGGATCATCATTATAATAAACTGCAGAAGTCTTAACCTGTGTCTGTTTCCATTTTGTTTTCTCTAATTGTGATCACATTTTGTGTTTTCTTATTTTTATTTTTTTTGTTCCATCATTTTAAAATCAATCAATTTGACCACTTTTGAAATCATCAAAAAGATAATTAGATCAGTTGAATTAGGCAAATCAAATCCCTATGGATACGATAATTTACTTATCACTTACTGTGAGATTGTGTATACTTGCACAACATTTTGAGGTGAAATTTAGTCATATTTTTAACCACTTCAAAAGGCAACAGTCATCTACAGTTTTTGGCTCTACAGCTTCTACACACATGGCAACCAAAGGAAATGCCCCTTCTTGACAGCAACAAAATTCCCCTGTTAGTCGACAACAATATAGTAACAATCAACGTGGAGGAAAAGGTAGAAACCAAGGCCAAGGTTGCTAGAATGGTAATAATAATCGACCCATCTGTCAAATTTGTGGCAAGAGTGGACATTTTGCATTAGATTGCTATCAGAGGTTTGATAAATAGTATGCCTGCTGGGTCAAATTACTGTTTTACCCCTGGGTTACTTCTATGTCCTTAAGTATCAGTTCTCCTCTAATGAACAACCTGTTTGTGGTCCAACCATCAAACAGAAAACACTCTCGTGCCATTGAGAGGGTAGGACCCTTTATTCAAGACTTGGAGACACCACTTAAGGGAACACTCATCTACTTCCCTAAAATCGGGAAGGAGTGAATTCCATCTTGTGTGATTATGTTCCCAGCTCCCCACTCGGTCTTATCCCCAAAATGATAGGCTTATTGAGTTGGCATATTGGCCACTCTCACCCATACAAATCAAAGGACAATCTCTCATGAGCAAGAGTCCATAACCAACTCAAGATTAAGACTAAGTTGTCTAGGTCATCCTAGTGAAATAGATACCTAACTAGTTAACGGTGTTATAACCAGTGGTCAATATTTCACGATCCGGTCTAATGCAAACTCATTGCATAGGATAACCCCCACTCGCATGTCTCCTACACGAATGTGTTGGATCATGGCGTTTGTATCAAATAAAAAGTTGGTCGTATCCATAGTGTCACCAAGATAAGGCATTCAGTCTTATCCCTATACTATAGATCTTTTAGGTTGTATCTTGAACAGTGATCCCCATGTGTCTTCACATACAATTCAAGACTCATACTACAACCTAGGATGTCTAGTTTATTGGATTAGGATTATTTAGGCAAAGACAAACATAATATAACTAACAACACTTAATTGAAAAAATACATCAATATTATTTCATTAATACTCAGTCAATCGTTACATTCACTATCTACGAGTTTTAGGGCATAAAACCCAACAGTGTGTTCCTTCTATAGCAAAAAAATCTTGTTAGTGTTTTAAAACTTGCTCAGGATAACAATGTCTATATTGAATTTCATGTTGATTCTTGTCTTGTTAAGGACATTCACCCAGACAAGGTGGTGTTGAAGGGGTTTCTTAAAGATGGTTCATACCAGCTTGGAACGGGAATCACTGGTAGTGCTTTAGGTTTAGTAGATAACAACTTGAAGTCGGCTAATAATTCAGTTCCCTCATCTGCTTTTATTGCCTCTACTTTTCTTGTTCATGTTAATGTATTGGCGTCCAAATCTGTTTGGCATAGAAGGCTTGGACGTCCATCCTTAAAAACATTGAATGCTATTGTTAAAGGATGTAATCTACCAGTGAGTACTAATGATATGTTTAATTTTTGTGAAGCATGTAAATTTGGAAAGTCTCATGCTTTTCCTTTTCCAAACTCAAAATCTCATGCTATCGCTTCATTTGACTAGGTTCACTCTGATCTTTGCGGTCCGACTCCAATTATGTCTAAAAAAGGTTATCGCTATTATGTTCACTTTCTTGATGACTTTAATCGTTTTGTTTGGGTATATCCACTGAAATTGAAAAGTGATACTCTTGCAGCCTTTACTCATTTTATTACAATGATAAGATCTCAATTTAACAAACACATCAAAGTATTACAGTCTGACAATGGAGGAGAATACAAGAAAGTTCATTAGTTTTCTGCCCAGAATGGTATTCAATCTCGTCTTTCCTGTCCCTATACTTCAACCCAAAATGGTCAAACGGAACGCAAACATCGACATATTGTTGAGACAGGCTTATCATTACTTTGTTGGGTTTAAACCCCAAGCACAACAGAAATATATCAGACCATTTGCTCAGTTTTAGTCAATGAATTAAAATACAATACGATGGCAATTTAACAGAGATCATACAATCATAATCCACTGTAAATCTTGTTGGGTTTTATGCCTAAAACTCGTAGATAGTAAATGCAACAATTGCTCGAACATTAATAAAATGTTGTTGATGTATTTTTCAATAAAGTATATTATTGTTTGTATTATGTTTGTCTTGTCTAAATAACCCTAATCCAATAAACTAATATCCTAGGTTGTTATATGAGTCTTGAACTGTATGTGGGGACATACAGAGATCATTGTTCAAGATACAACATAAAAGGGTCTAAAGTATAGGGATAAGGTTGGGTACCTTATCATGGTGACACTACGGATATAACCCGCTTTGTATTTAATACAAACACAATGATCCAACGCGTTCGTGTAAGGGACATGTGAGTGGGGGTATCCTATGCAATGAGTTTGCAGAAGACTGGACTGTGAAATAGTAACCACTAGTTGTAACACCGTTGACTAGTTAGGTTTCTATTTCACTAGGATGACCTAGGACCACTTAGTCTCAATCCTGAGTGAGTTATGGACTCCTGTTCACGAGGGATTGTCCTTTGATTTGTATGGGTGAGAGTAGCCAGTATGCTGACTCAATAAGCCTACCATTTTGGGGACAAGACTGAGTGGGGAGCTAGGAACATAATCACACAAGATGAAATTCACTCTTTCCCTACTTTAGGAGAAGTAGATGTGTGTTCTCTTAAGTGATGTCTCCGGGTCTTGAACAAAGGGCCCTACCCTCTCACTAGTCCGAGAGGGGTTTCTATTTGATGGTTGGACCTCAAACAGGTTGTTCATTAGAGGTGCACTGGTACTTAAGGATGTAGAGGTAACCTAGGGGTAAAACGGTAATTTGACCCAACTCATGTTAGGAACACTCGTGAAGGACTAAATTGATGTTATTGGTCAATATCCATGGACACAGAAATAGATTTACAGTGAGAAGAGAACAACTGTGGGTCTTGTTGGGTTTTATGCCCCAAAACTCTTAGATAGTGAATGTAAACAAATTGTATACTTGTTTCAGTAAAGTGTTATTGACTTTCTACAATAAAGTGTTAATGTTAAGTATTGCACAATATGACCCAAATCCAATAAACTAAGATCCAAGGTTGTTTGTATGTAACTTGAACTTATACGTGGGGACATACGGGGATCGATGTTCAAGTAACAACATAAAAGGTCTATAGTACAGGGATAAGGTTGGGTACCTTATCTTGGTAATACTATGTGATACGACCTGTTTTGTATTTGATATAGACGTATTGATCCAAAGCGTCCATGTAGTAAACATGCAAGCGGGGGTATCTGATAACTGCCCAAAAGGTAGTTATTTAGGCCTCAATTATATAGGGATTTGTGTGTCCTTTATGCTTATTAGGGTTGGTTTTGGATAGATATTACATGTTTTAACCCATTTGGAAGAATGGAAGCATTGGAAATTATTTTGTGCAGATTATGCTGCTGAGCGACTGGAGGGAGCAAATTCTATGCTGCAGCAAAACTGGGAACAGAAACTGCCACATCACAGCTCGTTAGCCAACTTCATGAACCGACTTCTGTTGAGTTATTTTCGTGATAAAGGATCAAGGAGAGCCTTACACGTGTCCTAG

mRNA sequence

ATGGCTACGTGTGCAGTGGTACCTAATTTCAGCAGCCCTCCTTTAAATCAGCTTTTAAATCAGAGAACGTTAATCAAGTTGGAAAGAGGTAATTATCTTTTGTGGAAAAATTTAGCTTTACCAATTCTTCGAGAATTTATCGCTTGGAAGGGCACTTGTCCGACGACAAGCCTTGTCCGACGACAAGCCTTGTCCGTCAAAGTTTCTCTCTACTCTTCAAGAAGTCACAGCAACCTACTTCTTCTTGGTTGGCTTTACAACTCAATGACACCTGAGGTAGCAGCCCAAGTTATGGGGTATGGAAATGCAAGAGATCTTTGGATTGTTGTACAAGAACTATTCGAAATCAAGTCTCGAGTCGAAAAAGATTATCTTCGTCAGGTATTTCAACAGACTCGTAAAGGTTCTCTTAAAATGGCTAATTATTTGCGTGCTATGAGATCGAATGCAGATAACTTGGGTCAAGCGGGAAATTATGTTCCGGCTCACTCTCTAATTTCTCATGTCCTGCTAGGACTAGATGAGGAATTCGATGCTGTAGTAGCCATGATCCAAGGAAGAATCAAAATATCTTGGTCAGAAATGCAACTTCTACACACATGGCAACCAAAGGAAATGCCCCTTCTTGACAGCAACAAAATTCCCCTGTTAGTCGACAACAATATAGTAACAATCAACGTGGAGGAAAAGGTAGAAACCAAGGCCAAGGTTGCTAGAATGGATAACAATGTCTATATTGAATTTCATGTTGATTCTTGTCTTGTTAAGGACATTCACCCAGACAAGGTGGTGTTGAAGGGGTTTCTTAAAGATGGTTCATACCAGCTTGGAACGGGAATCACTGGTAGTGCTTTAGGTTTAGTAGATAACAACTTGAAGTCGGCTAATAATTCAGTTCCCTCATCTGCTTTTATTGCCTCTACTTTTCTTGTTCATGTTAATGTATTGGCGTCCAAATCTGTTTGGCATAGAAGGCTTGGACGTCCATCCTTAAAAACATTGAATGCTATTGTTAAAGGATGTAATCTACCAGTTCACTCTGATCTTTGCGGTCCGACTCCAATTATGTCTAAAAAAGACGTATTGATCCAAAGCGTCCATGTAGTAAACATGCAAGCGGGGGTATCTGATAACTGCCCAAAAGATTATGCTGCTGAGCGACTGGAGGGAGCAAATTCTATGCTGCAGCAAAACTGGGAACAGAAACTGCCACATCACAGCTCGTTAGCCAACTTCATGAACCGACTTCTGTTGAGTTATTTTCGTGATAAAGGATCAAGGAGAGCCTTACACGTGTCCTAG

Coding sequence (CDS)

ATGGCTACGTGTGCAGTGGTACCTAATTTCAGCAGCCCTCCTTTAAATCAGCTTTTAAATCAGAGAACGTTAATCAAGTTGGAAAGAGGTAATTATCTTTTGTGGAAAAATTTAGCTTTACCAATTCTTCGAGAATTTATCGCTTGGAAGGGCACTTGTCCGACGACAAGCCTTGTCCGACGACAAGCCTTGTCCGTCAAAGTTTCTCTCTACTCTTCAAGAAGTCACAGCAACCTACTTCTTCTTGGTTGGCTTTACAACTCAATGACACCTGAGGTAGCAGCCCAAGTTATGGGGTATGGAAATGCAAGAGATCTTTGGATTGTTGTACAAGAACTATTCGAAATCAAGTCTCGAGTCGAAAAAGATTATCTTCGTCAGGTATTTCAACAGACTCGTAAAGGTTCTCTTAAAATGGCTAATTATTTGCGTGCTATGAGATCGAATGCAGATAACTTGGGTCAAGCGGGAAATTATGTTCCGGCTCACTCTCTAATTTCTCATGTCCTGCTAGGACTAGATGAGGAATTCGATGCTGTAGTAGCCATGATCCAAGGAAGAATCAAAATATCTTGGTCAGAAATGCAACTTCTACACACATGGCAACCAAAGGAAATGCCCCTTCTTGACAGCAACAAAATTCCCCTGTTAGTCGACAACAATATAGTAACAATCAACGTGGAGGAAAAGGTAGAAACCAAGGCCAAGGTTGCTAGAATGGATAACAATGTCTATATTGAATTTCATGTTGATTCTTGTCTTGTTAAGGACATTCACCCAGACAAGGTGGTGTTGAAGGGGTTTCTTAAAGATGGTTCATACCAGCTTGGAACGGGAATCACTGGTAGTGCTTTAGGTTTAGTAGATAACAACTTGAAGTCGGCTAATAATTCAGTTCCCTCATCTGCTTTTATTGCCTCTACTTTTCTTGTTCATGTTAATGTATTGGCGTCCAAATCTGTTTGGCATAGAAGGCTTGGACGTCCATCCTTAAAAACATTGAATGCTATTGTTAAAGGATGTAATCTACCAGTTCACTCTGATCTTTGCGGTCCGACTCCAATTATGTCTAAAAAAGACGTATTGATCCAAAGCGTCCATGTAGTAAACATGCAAGCGGGGGTATCTGATAACTGCCCAAAAGATTATGCTGCTGAGCGACTGGAGGGAGCAAATTCTATGCTGCAGCAAAACTGGGAACAGAAACTGCCACATCACAGCTCGTTAGCCAACTTCATGAACCGACTTCTGTTGAGTTATTTTCGTGATAAAGGATCAAGGAGAGCCTTACACGTGTCCTAG

Protein sequence

MATCAVVPNFSSPPLNQLLNQRTLIKLERGNYLLWKNLALPILREFIAWKGTCPTTSLVRRQALSVKVSLYSSRSHSNLLLLGWLYNSMTPEVAAQVMGYGNARDLWIVVQELFEIKSRVEKDYLRQVFQQTRKGSLKMANYLRAMRSNADNLGQAGNYVPAHSLISHVLLGLDEEFDAVVAMIQGRIKISWSEMQLLHTWQPKEMPLLDSNKIPLLVDNNIVTINVEEKVETKAKVARMDNNVYIEFHVDSCLVKDIHPDKVVLKGFLKDGSYQLGTGITGSALGLVDNNLKSANNSVPSSAFIASTFLVHVNVLASKSVWHRRLGRPSLKTLNAIVKGCNLPVHSDLCGPTPIMSKKDVLIQSVHVVNMQAGVSDNCPKDYAAERLEGANSMLQQNWEQKLPHHSSLANFMNRLLLSYFRDKGSRRALHVS

Homology

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BLAST of Lag0000498 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 199.9 bits (507), Expect = 4.5e-47
Identity = 106/203 (52.22%), Postives = 136/203 (67.00%), Query Frame = 0


Query: 10  FSSPPLNQLLNQRTLIKLERGNYLLWKNLALPILR-----EFIAWKGTCPTTSLVRRQAL 69
           F+SPPLNQLLNQ T IK++RGN+LLW+NLALPILR     +++     CP T LV     
Sbjct: 22  FTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTHLVPTDTP 81

Query: 70  SVKVSLYSSRSHSNL------------LLLGWLYNSMTPEVAAQVMGYGNARDLWIVVQE 129
           +      SS+S   L            LLLGWLYNSM  +VA QVMG+  +R+LW  VQE
Sbjct: 82  TNIEGSTSSQSSPTLNPTYEAWIVVDKLLLGWLYNSMAADVAMQVMGFSTSRELWTAVQE 141

Query: 130 LFEIKSRVEKDYLRQVFQQTRKGSLKMANYLRAMRSNADNLGQAGNYVPAHSLISHVLLG 189
           LF ++SR E DYL+QVFQQT KGSL+M  YL+ M+S+ADNL  AG+ V    L+S VL G
Sbjct: 142 LFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALAGSSVSVRDLVSQVLTG 201

Query: 190 LDEEFDAVVAMIQGRIKISWSEM 196
           LDEE++ +V  +QG++ +SWSEM
Sbjct: 202 LDEEYNPIVVAVQGKVNLSWSEM 224

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BLAST of Lag0000498 vs. NCBI nr
Match: KAA0026100.1 (uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 188.7 bits (478), Expect = 1.0e-43
Identity = 99/213 (46.48%), Postives = 135/213 (63.38%), Query Frame = 0


Query: 10  FSSPPLNQLLNQRTLIKLERGNYLLWKNLALPILREF-----IAWKGTCPTTSLVRRQAL 69
           FS+PPLNQ+LNQ   +KL+R NYLLWK LALPIL+ +     +  +  CP+  ++   + 
Sbjct: 18  FSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTGETPCPSHFVLSASSS 77

Query: 70  SVKV---------------------SLYSSRSHSNLLLLGWLYNSMTPEVAAQVMGYGNA 129
           +  V                     SL+     ++LLLLGWLYNSMTP+VA Q+MG+ N 
Sbjct: 78  NTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNV 137

Query: 130 RDLWIVVQELFEIKSRVEKDYLRQVFQQTRKGSLKMANYLRAMRSNADNLGQAGNYVPAH 189
            DLW   Q+ F ++SR E+D+LRQ+ Q TRKG+ KM  YL  M++N DNLGQ G+ VP  
Sbjct: 138 EDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKTNVDNLGQVGSPVPRR 197

Query: 190 SLISHVLLGLDEEFDAVVAMIQGRIKISWSEMQ 197
           +LIS VLLGLDE ++ V+ +IQG+  ISW +MQ
Sbjct: 198 ALISQVLLGLDEVYNLVIVVIQGKPDISWLDMQ 230

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BLAST of Lag0000498 vs. NCBI nr
Match: XP_022148963.1 (uncharacterized protein LOC111017501 [Momordica charantia])

HSP 1 Score: 176.4 bits (446), Expect = 5.3e-40
Identity = 89/127 (70.08%), Postives = 104/127 (81.89%), Query Frame = 0


Query: 70  LYSSRSHSNLLLLGWLYNSMTPEVAAQVMGYGNARDLWIVVQELFEIKSRVEKDYLRQVF 129
           LY S   ++ LLLGWLYNSMTPEVA QVMGY NA DLW  +QELF ++S+ E+DYLRQVF
Sbjct: 34  LYESWVTTDQLLLGWLYNSMTPEVATQVMGYENACDLWAAIQELFGVQSQAEEDYLRQVF 93

Query: 130 QQTRKGSLKMANYLRAMRSNADNLGQAGNYVPAHSLISHVLLGLDEEFDAVVAMIQGRIK 189
           QQTRKGSLKM ++LR M+S+ADNLGQAG+ VP  SLIS VLLGLDEE++ VVA IQG+  
Sbjct: 94  QQTRKGSLKMTDFLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNPVVATIQGKRG 153

Query: 190 ISWSEMQ 197
           ISW EMQ
Sbjct: 154 ISWPEMQ 160

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BLAST of Lag0000498 vs. NCBI nr
Match: XP_038902487.1 (uncharacterized protein LOC120089143 [Benincasa hispida])

HSP 1 Score: 172.2 bits (435), Expect = 1.0e-38
Identity = 99/216 (45.83%), Postives = 128/216 (59.26%), Query Frame = 0


Query: 23  TLIKLERGNYLLWKNLALPILREF-----IAWKGTCP----------------------- 82
           T IKL++ NYLLW+NLALPILR +     +  +  CP                       
Sbjct: 43  TTIKLDQENYLLWRNLALPILRSYRLEGHLTGEDPCPPRFSVATDQSTATVPPGDEAGLG 102

Query: 83  -----TTSLVRRQALSVKVS---------LYSSRSHSNLLLLGWLYNSMTPEVAAQVMGY 142
                  SL  +Q ++   +          Y SR+  + LLLGWLYN MT EVA QVMGY
Sbjct: 103 GQYSGIASLTPQQGITTASNSSPVLQVNPFYESRTVVDQLLLGWLYNFMTAEVAMQVMGY 162

Query: 143 GNARDLWIVVQELFEIKSRVEKDYLRQVFQQTRKGSLKMANYLRAMRSNADNLGQAGNYV 197
            N + LW  +QELF ++SR  +DYLRQVFQQT KG++KM  YLR M++++DNLG  G+ V
Sbjct: 163 ENYKYLWAAIQELFGLQSRAGEDYLRQVFQQTCKGAMKMPEYLRVMKTHSDNLGLTGSPV 222

[Close]

BLAST of Lag0000498 vs. NCBI nr
Match: XP_038887140.1 (uncharacterized protein LOC120077331 [Benincasa hispida])

HSP 1 Score: 160.6 bits (405), Expect = 3.0e-35
Identity = 77/118 (65.25%), Postives = 98/118 (83.05%), Query Frame = 0


Query: 80  LLLGWLYNSMTPEVAAQVMGYGNARDLWIVVQELFEIKSRVEKDYLRQVFQQTRKGSLKM 139
           LLLGWLYNSMTPEV  QVMG G A+DLW  +Q+LF ++SRVE+DYLR VFQ+TRKG+LKM
Sbjct: 55  LLLGWLYNSMTPEVTIQVMGCGCAKDLWTSIQQLFVLQSRVEEDYLRHVFQRTRKGNLKM 114

Query: 140 ANYLRAMRSNADNLGQAGNYVPAHSLISHVLLGLDEEFDAVVAMIQGRIKISWSEMQL 198
            +YLR+M+ NADNL +AG+ +P  +L+S VLLGLDEE++A+VA IQGR  + W +MQL
Sbjct: 115 EDYLRSMKMNADNLEKAGSPMPQRTLVSQVLLGLDEEYNAIVATIQGRADMPWLDMQL 172

[Close]

BLAST of Lag0000498 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.2e-47
Identity = 106/203 (52.22%), Postives = 136/203 (67.00%), Query Frame = 0


Query: 10  FSSPPLNQLLNQRTLIKLERGNYLLWKNLALPILR-----EFIAWKGTCPTTSLVRRQAL 69
           F+SPPLNQLLNQ T IK++RGN+LLW+NLALPILR     +++     CP T LV     
Sbjct: 22  FTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTHLVPTDTP 81

Query: 70  SVKVSLYSSRSHSNL------------LLLGWLYNSMTPEVAAQVMGYGNARDLWIVVQE 129
           +      SS+S   L            LLLGWLYNSM  +VA QVMG+  +R+LW  VQE
Sbjct: 82  TNIEGSTSSQSSPTLNPTYEAWIVVDKLLLGWLYNSMAADVAMQVMGFSTSRELWTAVQE 141

Query: 130 LFEIKSRVEKDYLRQVFQQTRKGSLKMANYLRAMRSNADNLGQAGNYVPAHSLISHVLLG 189
           LF ++SR E DYL+QVFQQT KGSL+M  YL+ M+S+ADNL  AG+ V    L+S VL G
Sbjct: 142 LFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALAGSSVSVRDLVSQVLTG 201

Query: 190 LDEEFDAVVAMIQGRIKISWSEM 196
           LDEE++ +V  +QG++ +SWSEM
Sbjct: 202 LDEEYNPIVVAVQGKVNLSWSEM 224

[Close]

BLAST of Lag0000498 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.0e-44
Identity = 99/213 (46.48%), Postives = 135/213 (63.38%), Query Frame = 0


Query: 10  FSSPPLNQLLNQRTLIKLERGNYLLWKNLALPILREF-----IAWKGTCPTTSLVRRQAL 69
           FS+PPLNQ+LNQ   +KL+R NYLLWK LALPIL+ +     +  +  CP+  ++   + 
Sbjct: 18  FSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTGETPCPSHFVLSASSS 77

Query: 70  SVKV---------------------SLYSSRSHSNLLLLGWLYNSMTPEVAAQVMGYGNA 129
           +  V                     SL+     ++LLLLGWLYNSMTP+VA Q+MG+ N 
Sbjct: 78  NTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNV 137

Query: 130 RDLWIVVQELFEIKSRVEKDYLRQVFQQTRKGSLKMANYLRAMRSNADNLGQAGNYVPAH 189
            DLW   Q+ F ++SR E+D+LRQ+ Q TRKG+ KM  YL  M++N DNLGQ G+ VP  
Sbjct: 138 EDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKTNVDNLGQVGSPVPRR 197

Query: 190 SLISHVLLGLDEEFDAVVAMIQGRIKISWSEMQ 197
           +LIS VLLGLDE ++ V+ +IQG+  ISW +MQ
Sbjct: 198 ALISQVLLGLDEVYNLVIVVIQGKPDISWLDMQ 230

[Close]

BLAST of Lag0000498 vs. ExPASy TrEMBL
Match: A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.6e-40
Identity = 89/127 (70.08%), Postives = 104/127 (81.89%), Query Frame = 0


Query: 70  LYSSRSHSNLLLLGWLYNSMTPEVAAQVMGYGNARDLWIVVQELFEIKSRVEKDYLRQVF 129
           LY S   ++ LLLGWLYNSMTPEVA QVMGY NA DLW  +QELF ++S+ E+DYLRQVF
Sbjct: 34  LYESWVTTDQLLLGWLYNSMTPEVATQVMGYENACDLWAAIQELFGVQSQAEEDYLRQVF 93

Query: 130 QQTRKGSLKMANYLRAMRSNADNLGQAGNYVPAHSLISHVLLGLDEEFDAVVAMIQGRIK 189
           QQTRKGSLKM ++LR M+S+ADNLGQAG+ VP  SLIS VLLGLDEE++ VVA IQG+  
Sbjct: 94  QQTRKGSLKMTDFLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNPVVATIQGKRG 153

Query: 190 ISWSEMQ 197
           ISW EMQ
Sbjct: 154 ISWPEMQ 160

[Close]

BLAST of Lag0000498 vs. ExPASy TrEMBL
Match: A0A5D3BCH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1970G00140 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.2e-35
Identity = 103/294 (35.03%), Postives = 150/294 (51.02%), Query Frame = 0


Query: 10  FSSPPLNQLLNQRTLIKLERGNYLLWKNLALPILREF-----IAWKGTCPTTSLVRRQAL 69
           FS+PPLNQ+LNQ   +KL+R NYLLWK LALPIL+ +     +  +  CP+  ++   + 
Sbjct: 18  FSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTGETPCPSHFVLSASSS 77

Query: 70  SVKV---------------------SLYSSRSHSNLLLLGWLYNSMTPEVAAQVMGYGNA 129
           +  V                     SL+     ++LLLLGWLYNSMTP+VA Q+MG+ N 
Sbjct: 78  NTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNV 137

Query: 130 RDLWIVVQELFEIKSRVEKDYLRQVFQQTRKGSLKMANYLRAMRSNADNLGQAGNYVPAH 189
            DLW   Q+ F ++SR E+D+LRQ+ Q TRKG+ KM  YL  M++N DNLGQ G+ VP  
Sbjct: 138 EDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKTNVDNLGQVGSPVPRR 197

Query: 190 SLISHVLLGLDEEFDAVVAMIQGRIKISWSEMQLLHTWQPKEMPLLDS-NKIPLLVDNNI 249
           +LIS        ++ A  +     + I W+E     +  P     + + N  P    + +
Sbjct: 198 ALISQTTF----QWAARKSQQWTNMPIMWNEHSSNGSVSPNPAVFVSTQNATPFATPDTV 257

Query: 250 VTINVEEKVETKAKVARMDNNVYIEFHVDSCLVKDIHPDKVVLKGFLKDGSYQL 277
           V  N          V R  +N+         +       + +L+G L+DG YQL
Sbjct: 258 VDPNWYIDSGATNHVTRECSNMTNPTEYSGQIY-----GETLLRGTLRDGFYQL 302

[Close]

BLAST of Lag0000498 vs. ExPASy TrEMBL
Match: A0A5A7VPY0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001000 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.7e-34
Identity = 86/192 (44.79%), Postives = 117/192 (60.94%), Query Frame = 0


Query: 3   TCAVVPNFSSPPLNQLLNQRTLIKLERGNYLLWKNLALPILREF---------------I 62
           T     +F++P LNQ+LNQ T IKL+RGNYLLWK LALPIL+ +               I
Sbjct: 10  TATPTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGESPCLPKI 69

Query: 63  AWKGTCPTTSLVRRQALSVKVSLYSSRS------------HSNLLLLGWLYNSMTPEVAA 122
               T P  S+V       + +  SS +             ++LLLLGWLYNSMTPEV  
Sbjct: 70  IMLTTQPNESIVENAGEPSQETSSSSTAVVTVNPKYERWITTDLLLLGWLYNSMTPEVTI 129

Query: 123 QVMGYGNARDLWIVVQELFEIKSRVEKDYLRQVFQQTRKGSLKMANYLRAMRSNADNLGQ 168
           Q+MG+ NA+DLW   Q+LF I+SR ++D+L Q FQ T+KG+L M  YLR M++N +NLGQ
Sbjct: 130 QLMGFTNAKDLWEATQDLFGIQSRAKEDFLHQTFQTTKKGNLNMEEYLRTMKNNVNNLGQ 189

[Close]

BLAST of Lag0000498 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 1.7e-04
Identity = 36/165 (21.82%), Postives = 71/165 (43.03%), Query Frame = 0


Query: 24  LIKLERGNYLLWKNLALPILREFIAWKGTCPTTSLVRRQALSVKVSLYSSRSHSNLLLLG 83
           ++ +E  NY  W+ L L     F            +    L    +  + +    ++ L 
Sbjct: 23  MLDIEESNYDAWRELFLTHCLSF-------DVMGHIDGTLLPTNANDVNWQKRDGIVKLS 82

Query: 84  WLYNSMTP-EVAAQVMGYGNARDLWIVVQELFEIKSRVEKDYLRQVFQQTRKGSLKMANY 143
            LY ++TP +     +    +RD+W+ ++  F          L    +    G +++A+Y
Sbjct: 83  -LYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADY 142

Query: 144 LRAMRSNADNLGQAGNYVPAHSLISHVLLGLDEEFDAVVAMIQGR 188
            R M+  AD+L      V   +L+ +VL GL+ +FD ++ +I+ R
Sbjct: 143 YRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHR 179

The following BLAST results are available for this feature:

BLAST of Lag0000498 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151683.1	4.5e-47	52.22	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
KAA0026100.1	1.0e-43	46.48	uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]	[more]
XP_022148963.1	5.3e-40	70.08	uncharacterized protein LOC111017501 [Momordica charantia]	[more]
XP_038902487.1	1.0e-38	45.83	uncharacterized protein LOC120089143 [Benincasa hispida]	[more]
XP_038887140.1	3.0e-35	65.25	uncharacterized protein LOC120077331 [Benincasa hispida]	[more]

BLAST of Lag0000498 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0000498 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCW4	2.2e-47	52.22	uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5A7SIT7	5.0e-44	46.48	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1D5J0	2.6e-40	70.08	uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A5D3BCH9	4.2e-35	35.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VPY0	4.7e-34	44.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lag0000498 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34070.1	1.7e-04	21.82	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 82..186 e-value: 3.2E-9 score: 36.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000498.1	Lag0000498.1	mRNA