Lag0000482 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000482
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionS-locus lectin protein kinase family protein, putative
Locationchr4: 8331478 .. 8331876 (-)
RNA-Seq ExpressionLag0000482
SyntenyLag0000482
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATAGATCGTGATGGGTACAGTGACTACGCGAGTAACCATTTCGATGCCCATCAGATCATTGAACATCTATGTAGGCTAGGGGCGGTATGGTTAATAAGGCGAGGTGAGGCCATTAATTTCAAATCCTCTGATCTGACAGTGGATAACAGAGTCTGGCATAGTTTTATGTGTGTCAAACTCATGCATGTGATGCATCTTAGTGATGTAACAAAGAAAAGAACAGCTCTGTTATTCGCTATAGCGACTAGACGCACTATAGATGTAGGGAAAGTTATCTATGCTTCCATGCACCAGATTTGCAGAAGAGCCACCACTGTAGGGCTAGGTCACCCTTCCCTCATCACAGCACTCTACAGAGCTGCTGGGTCATGTGGGACCCCCGTGAGGAGTTAG

mRNA sequence

ATGTTGATAGATCGTGATGGGTACAGTGACTACGCGAGTAACCATTTCGATGCCCATCAGATCATTGAACATCTATGTAGGCTAGGGGCGGTATGGTTAATAAGGCGAGGTGAGGCCATTAATTTCAAATCCTCTGATCTGACAGTGGATAACAGAGTCTGGCATAGTTTTATGTGTGTCAAACTCATGCATGTGATGCATCTTAGTGATGTAACAAAGAAAAGAACAGCTCTGTTATTCGCTATAGCGACTAGACGCACTATAGATGTAGGGAAAGTTATCTATGCTTCCATGCACCAGATTTGCAGAAGAGCCACCACTGTAGGGCTAGGTCACCCTTCCCTCATCACAGCACTCTACAGAGCTGCTGGGTCATGTGGGACCCCCGTGAGGAGTTAG

Coding sequence (CDS)

ATGTTGATAGATCGTGATGGGTACAGTGACTACGCGAGTAACCATTTCGATGCCCATCAGATCATTGAACATCTATGTAGGCTAGGGGCGGTATGGTTAATAAGGCGAGGTGAGGCCATTAATTTCAAATCCTCTGATCTGACAGTGGATAACAGAGTCTGGCATAGTTTTATGTGTGTCAAACTCATGCATGTGATGCATCTTAGTGATGTAACAAAGAAAAGAACAGCTCTGTTATTCGCTATAGCGACTAGACGCACTATAGATGTAGGGAAAGTTATCTATGCTTCCATGCACCAGATTTGCAGAAGAGCCACCACTGTAGGGCTAGGTCACCCTTCCCTCATCACAGCACTCTACAGAGCTGCTGGGTCATGTGGGACCCCCGTGAGGAGTTAG

Protein sequence

MLIDRDGYSDYASNHFDAHQIIEHLCRLGAVWLIRRGEAINFKSSDLTVDNRVWHSFMCVKLMHVMHLSDVTKKRTALLFAIATRRTIDVGKVIYASMHQICRRATTVGLGHPSLITALYRAAGSCGTPVRS
Homology
BLAST of Lag0000482 vs. NCBI nr
Match: KAA0033353.1 (putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa] >TYJ96637.1 putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 6.8e-31
Identity = 71/121 (58.68%), Postives = 87/121 (71.90%), Query Frame = 0

Query: 4   DRDGYSDYASNHFDAHQIIEHLCRLGAVWLIRRGEAINFKSSDLTVDNRVWHSFMCVKLM 63
           +RD Y+ YAS H D HQII  LC+ GA W+I  GE I FKSS+LTV N+VWH F+C KL+
Sbjct: 120 ERDEYAIYASEHVDVHQIIRELCQPGAEWIINPGEPIRFKSSNLTVSNQVWHKFICAKLL 179

Query: 64  HVMHLSDVTKKRTALLFAIATRRTIDVGKVIYASMHQICRRATTVGLGHPSLITALYRAA 123
            V H S VTK+R  LL+AIAT+R++DVGKVI+ S+  I +   T GLGH SLITAL R  
Sbjct: 180 PVAHTSSVTKERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRNE 239

Query: 124 G 125
           G
Sbjct: 240 G 240

BLAST of Lag0000482 vs. NCBI nr
Match: XP_008458668.1 (PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 6.8e-31
Identity = 71/121 (58.68%), Postives = 87/121 (71.90%), Query Frame = 0

Query: 4   DRDGYSDYASNHFDAHQIIEHLCRLGAVWLIRRGEAINFKSSDLTVDNRVWHSFMCVKLM 63
           +RD Y+ YAS H D HQII  LC+ GA W+I  GE I FKSS+LTV N+VWH F+C KL+
Sbjct: 58  ERDEYAIYASEHVDVHQIIRELCQPGAEWIINPGEPIRFKSSNLTVSNQVWHKFICAKLL 117

Query: 64  HVMHLSDVTKKRTALLFAIATRRTIDVGKVIYASMHQICRRATTVGLGHPSLITALYRAA 123
            V H S VTK+R  LL+AIAT+R++DVGKVI+ S+  I +   T GLGH SLITAL R  
Sbjct: 118 PVAHTSSVTKERAILLYAIATKRSVDVGKVIHKSLCNIRKSGMTGGLGHSSLITALCRNE 177

Query: 124 G 125
           G
Sbjct: 178 G 178

BLAST of Lag0000482 vs. NCBI nr
Match: KGN46897.1 (hypothetical protein Csa_020731 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 2.6e-30
Identity = 71/121 (58.68%), Postives = 85/121 (70.25%), Query Frame = 0

Query: 4   DRDGYSDYASNHFDAHQIIEHLCRLGAVWLIRRGEAINFKSSDLTVDNRVWHSFMCVKLM 63
           +RD Y  YAS H D HQII  LC+ GA W+I  GE I FKSS+LTV N+VWH F+C KL+
Sbjct: 120 ERDEYDIYASEHVDVHQIIRELCQPGAEWVINPGEPIRFKSSNLTVSNQVWHKFICAKLL 179

Query: 64  HVMHLSDVTKKRTALLFAIATRRTIDVGKVIYASMHQICRRATTVGLGHPSLITALYRAA 123
            V H S VTK+R  LL+AIAT+R++DVGKVI  S+  I +   T GLGH SLITAL R  
Sbjct: 180 PVAHTSSVTKERAILLYAIATKRSVDVGKVIQKSLCNIRKSGMTGGLGHSSLITALCRNE 239

Query: 124 G 125
           G
Sbjct: 240 G 240

BLAST of Lag0000482 vs. NCBI nr
Match: EOY08969.1 (Uncharacterized protein TCM_024271 [Theobroma cacao])

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-14
Identity = 44/117 (37.61%), Postives = 75/117 (64.10%), Query Frame = 0

Query: 3   IDRDGYSDYASNHFDAHQIIEHLCRLGAVWLIRRGEAINFKSSDLTVDNRVWHSFMCVKL 62
           I+ D Y  + +   +  +++  L  LG  W + +G  I+FK++ +  D +VW+ F+ +KL
Sbjct: 33  IENDEYDQFVNGDINLDEVLRSLSILGTEWQVHKGVVISFKANAMDNDYKVWYHFVAMKL 92

Query: 63  MHVMHLSDVTKKRTALLFAIATRRTIDVGKVIYASMHQICRRATTVGLGHPSLITAL 120
           + V +LSDVTK R  LL+AI T++ ID+G++I+ ++  +  R+   GL +PSLITAL
Sbjct: 93  LLVKYLSDVTKDRAILLYAIVTKKFIDIGQLIFKNI-IMSARSPPNGLWYPSLITAL 148

BLAST of Lag0000482 vs. NCBI nr
Match: EOY13933.1 (Uncharacterized protein TCM_032752 [Theobroma cacao])

HSP 1 Score: 85.5 bits (210), Expect = 3.8e-13
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 0

Query: 3   IDRDGYSDYASNHFDAHQIIEHLCRLGAVWLIRRGEAINFKSSDLTVDNRVWHSFMCVKL 62
           I+ D Y  Y  +H D ++II  LC  GA W    GE ++FK S +  + +VW  F+  +L
Sbjct: 115 IENDEYGQYLGDHQDCNEIISTLCIEGAQWKTSHGEPVSFKRSVMKKELKVWLHFVAARL 174

Query: 63  MHVMHLSDVTKKRTALLFAIATRRTIDVGKVI 95
           +   H+SDVTK R  L++AI T ++IDVGKVI
Sbjct: 175 LPSTHISDVTKDRAVLIYAIVTHKSIDVGKVI 206

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0033353.16.8e-3158.68putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa]... [more]
XP_008458668.16.8e-3158.68PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo][more]
KGN46897.12.6e-3058.68hypothetical protein Csa_020731 [Cucumis sativus][more]
EOY08969.11.5e-1437.61Uncharacterized protein TCM_024271 [Theobroma cacao][more]
EOY13933.13.8e-1343.48Uncharacterized protein TCM_032752 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000482.1Lag0000482.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006561 proline biosynthetic process
cellular_component GO:0005829 cytosol
molecular_function GO:0004349 glutamate 5-kinase activity