Lag0000471 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000471
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr4: 8043850 .. 8044221 (+)
RNA-Seq ExpressionLag0000471
SyntenyLag0000471
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACATCCTTCAAGAACCGGAGCTGTAATGGCAACGGCAATGGCAGTCCTGATTTTGATGCTGAGCGGAAGCAATTGTAAGGTTGCTTCTCTAAGTCCTTACAATGTCGGCAACCAGACCGTCGCCGCTGCGGCATCGATGTGGTGCGATGGCGGCACAGAAGAATGTCTCGCCGGAGAAGACGACGGTGAGCTGGCATTTCCAAGCTTGCAAGGCAGTGCAGGCCGTAGGCCTACTGACGGGACGAGAAGCCGGGGAAAACCTGCATGTGATCGGCCGAATGGAGAAAGATATTACGACTGTACCGGCAAACCACGCACAATTCCCAAGCCCCAGCCTTGTGTCGTATATACTCGCGGCTGTAAATAA

mRNA sequence

ATGGGACATCCTTCAAGAACCGGAGCTGTAATGGCAACGGCAATGGCAGTCCTGATTTTGATGCTGAGCGGAAGCAATTGTAAGGTTGCTTCTCTAAGTCCTTACAATGTCGGCAACCAGACCGTCGCCGCTGCGGCATCGATGTGGTGCGATGGCGGCACAGAAGAATGTCTCGCCGGAGAAGACGACGGTGAGCTGGCATTTCCAAGCTTGCAAGGCAGTGCAGGCCGTAGGCCTACTGACGGGACGAGAAGCCGGGGAAAACCTGCATGTGATCGGCCGAATGGAGAAAGATATTACGACTGTACCGGCAAACCACGCACAATTCCCAAGCCCCAGCCTTGTGTCGTATATACTCGCGGCTGTAAATAA

Coding sequence (CDS)

ATGGGACATCCTTCAAGAACCGGAGCTGTAATGGCAACGGCAATGGCAGTCCTGATTTTGATGCTGAGCGGAAGCAATTGTAAGGTTGCTTCTCTAAGTCCTTACAATGTCGGCAACCAGACCGTCGCCGCTGCGGCATCGATGTGGTGCGATGGCGGCACAGAAGAATGTCTCGCCGGAGAAGACGACGGTGAGCTGGCATTTCCAAGCTTGCAAGGCAGTGCAGGCCGTAGGCCTACTGACGGGACGAGAAGCCGGGGAAAACCTGCATGTGATCGGCCGAATGGAGAAAGATATTACGACTGTACCGGCAAACCACGCACAATTCCCAAGCCCCAGCCTTGTGTCGTATATACTCGCGGCTGTAAATAA

Protein sequence

MGHPSRTGAVMATAMAVLILMLSGSNCKVASLSPYNVGNQTVAAAASMWCDGGTEECLAGEDDGELAFPSLQGSAGRRPTDGTRSRGKPACDRPNGERYYDCTGKPRTIPKPQPCVVYTRGCK
Homology
BLAST of Lag0000471 vs. NCBI nr
Match: KAG6607070.1 (hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-23
Identity = 69/127 (54.33%), Postives = 79/127 (62.20%), Query Frame = 0

Query: 1   MGHPSRTGAVM----ATAMAVLILMLSGSNCKVASLSPYNVGNQTVAAAASMWCDGGTEE 60
           MGH S +GAVM    A AM V ILMLSGS+C VAS +P + GN TVAAAASMWCDG  EE
Sbjct: 1   MGHSSNSGAVMAAAAAAAMGVFILMLSGSHCSVASPTPSSYGNITVAAAASMWCDGRVEE 60

Query: 61  CLAGEDDGELAFPSLQGSAGRRPTDGTRSRGKPACDRPNGERYYDCTGKPRTIPKPQPCV 120
           C+  EDDGE AFPSL  S  +  +  TR+R KP C+RP    Y  C    RT  K   C 
Sbjct: 61  CVTREDDGESAFPSLLASTPKFISFPTRNRNKPVCERPGD--YKSCFNARRTNTKNDNCG 120

Query: 121 VYTRGCK 124
            Y R C+
Sbjct: 121 TYGRACR 125

BLAST of Lag0000471 vs. NCBI nr
Match: KAG6607071.1 (hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.4 bits (272), Expect = 2.3e-20
Identity = 62/123 (50.41%), Postives = 75/123 (60.98%), Query Frame = 0

Query: 1   MGHPSRTGAVM-ATAMAVLILMLSGSNCKVASLSPYNVGNQTVAAAASMWCDGGTEECLA 60
           MGH S +G VM A AM V IL+LSGS+C VAS +P + GN TVAAAASMWCDG  EEC+ 
Sbjct: 1   MGHSSNSGGVMAAAAMGVFILVLSGSDCNVASPTPSSYGNNTVAAAASMWCDGRVEECVT 60

Query: 61  GEDDGELAFPSLQGSAGRRPTDGTRSRGKPACDRPNGERYYDCTGKPRTIPKPQPCVVYT 120
            E D   AFPSLQ S  +  +  + +  K  C+RP  + Y  C    R+ P P  C  YT
Sbjct: 61  REGDSASAFPSLQTSTRKYISPSSVNSNKAVCERP--DEYRSCFNPRRSNPNPNNCGRYT 120

Query: 121 RGC 123
           R C
Sbjct: 121 RVC 121

BLAST of Lag0000471 vs. NCBI nr
Match: KAG6607014.1 (Protein PTST, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-05
Identity = 44/114 (38.60%), Postives = 59/114 (51.75%), Query Frame = 0

Query: 9   AVMATAMAVLILMLSGSNCKVASLSPYNVGNQTVAAAASMWCDGGTEECLAGEDDGE--- 68
           A+MA   A+++L L+ SN   ASLS  N GN+T A A S WCD  TEECL G+DD +   
Sbjct: 5   AMMAAVAAIVVLTLAASNGNAASLSRSNFGNETDAGAPSTWCDRRTEECLVGDDDVDGSD 64

Query: 69  ---LAFPSLQGSAGRRPTDGTRSRGKPACDRPNGERYYDCTGKPRTIPKPQPCV 117
              LAF  +   +GR   +  R    PA    N +R  + T     I  P+ C+
Sbjct: 65  FLSLAFVDVSRISGRTGNE-NRPDSIPAVHPRNCKRLEEPT--DMEIYAPRSCL 115

BLAST of Lag0000471 vs. NCBI nr
Match: KGN57814.1 (hypothetical protein Csa_009509 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-04
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 0

Query: 7   TGAVMATAMAVLILMLSGSNCKVASLSPYNVGNQ-TVAAAASMWCDGGTEECLAGEDDGE 66
           T  ++A A+ V++  +  S+CK ASL+  N+GN+ T AA +S WC+   +ECL G +D  
Sbjct: 16  TTTMVAVAIIVVVSTIGASHCKAASLNS-NLGNETTTAATSSTWCNSLDKECLIGVEDDN 75

Query: 67  L---AFPSLQGSAGRRPTDGTRSRGKPACDRPNGERYYDCTGKPRTIPKP-QPCVVYTRG 123
           +   AFPSL        T  T +  K  C R    RY +    P+  P P Q C  +TR 
Sbjct: 76  IETSAFPSLYN------TVRTANGQKAVCGRVG--RYDNQRCLPQKRPNPIQKCSTFTRS 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6607070.11.7e-2354.33hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607071.12.3e-2050.41hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607014.13.5e-0538.60Protein PTST, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia][more]
KGN57814.12.3e-0436.36hypothetical protein Csa_009509 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000471.1Lag0000471.1mRNA