Lag0000458 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAAAGAAGAGCTCTCATTCAAAACTACTCCAAGATTGTAGGAGGGATATCAACGGAGGTTGGAGTCCAGCCCCATCGAACGCCACGAAAATATTCTGCTGGAATGTTCGAGGGTTGTGGAATCCTCGAGCATTGTCATGAGATTAGAAGCAAAAATCCCCATATCGTTTTTATCACAAAAACTAAAAGCGGGTCAGCTAGAATGGAGAAAGTGAAAAATGATCTGAACTTTGATTGTGGCTTTTGTGTCTCTAGTATGGGAAAAAGTTGTGGTTTAGTTTTGTTGTGGAAAGAGGAGTTGAACATCACTATTACCTCGTACTCTATAGGACATATAAACACAGTGATAAAAAAAATCTAGTGATTGAGGAGATTTATCGGTTTTTATGGAAACCCTATACCTAAAAAGAGAAAAGAATCATGGGAGCTCATGGAAAGGTTAAGTGGCATATCTAATCTCCCCTAGATTATTGGGGGGGGGGGGATTTCAACGAAATCCTGTTTGCTGATGAAAAGAGAGGAAGAGCAGGTAGAGGCCAAAACCTCATGGAGGCGTTCCGTTTGGCTTTGGACAAATGCAATCTAGCAGATCTGGTAGCTCCTAGAAACGTGTTCACTTGGATGAAAAGGGTGAGAGGAGGTACGACCATTGCAGAAAGACTTGATCGTTTCTTGGCAAACGACGAGTTTAGATCCTTGTTTAGAAATATTGGCATCAGTCACCTGAACAAGCATGGTTCGGACCACCATCCTATTGTGGCTTCCATGGCTAAAAGTGGAAGTACTAAGGAAGTTTTTAAAAGTGAAGGGATAAAAGCCCTTTTCGCAGCGGAAACGTACAGAAAACCACACTGA ATGAAAAGAAGAGCTCTCATTCAAAACTACTCCAAGATTGTAGGAGGGATATCAACGGAGGTTGGAGTCCAGCCCCATCGAACGCCACGAAAATATTCTGCTGGAATGTTCGAGGGTTGTGGAATCCTCGAGCATTGTCATGAGATTAGAAGCAAAAATCCCCATATCGTTTTTATCACAAAAACTAAAAGCGGGTCAGCTAGAATGGAGAAAGTGAAAAATGATCTGAACTTTGATTGTGGCTTTTGTGTCTCTAATTATTGGGGGGGGGGGGATTTCAACGAAATCCTGTTTGCTGATGAAAAGAGAGGAAGAGCAGGTAGAGGCCAAAACCTCATGGAGGCGTTCCGTTTGGCTTTGGACAAATGCAATCTAGCAGATCTGGTAGCTCCTAGAAACGTGTTCACTTGGATGAAAAGGGTGAGAGGAGGTACGACCATTGCAGAAAGACTTGATCGTTTCTTGGCAAACGACGAGTTTAGATCCTTGTTTAGAAATATTGGCATCAGTCACCTGAACAAGCATGGTTCGGACCACCATCCTATTGTGGCTTCCATGGCTAAAAGTGGAAGTACTAAGGAAGTTTTTAAAAGTGAAGGGATAAAAGCCCTTTTCGCAGCGGAAACGTACAGAAAACCACACTGA ATGAAAAGAAGAGCTCTCATTCAAAACTACTCCAAGATTGTAGGAGGGATATCAACGGAGGTTGGAGTCCAGCCCCATCGAACGCCACGAAAATATTCTGCTGGAATGTTCGAGGGTTGTGGAATCCTCGAGCATTGTCATGAGATTAGAAGCAAAAATCCCCATATCGTTTTTATCACAAAAACTAAAAGCGGGTCAGCTAGAATGGAGAAAGTGAAAAATGATCTGAACTTTGATTGTGGCTTTTGTGTCTCTAATTATTGGGGGGGGGGGGATTTCAACGAAATCCTGTTTGCTGATGAAAAGAGAGGAAGAGCAGGTAGAGGCCAAAACCTCATGGAGGCGTTCCGTTTGGCTTTGGACAAATGCAATCTAGCAGATCTGGTAGCTCCTAGAAACGTGTTCACTTGGATGAAAAGGGTGAGAGGAGGTACGACCATTGCAGAAAGACTTGATCGTTTCTTGGCAAACGACGAGTTTAGATCCTTGTTTAGAAATATTGGCATCAGTCACCTGAACAAGCATGGTTCGGACCACCATCCTATTGTGGCTTCCATGGCTAAAAGTGGAAGTACTAAGGAAGTTTTTAAAAGTGAAGGGATAAAAGCCCTTTTCGCAGCGGAAACGTACAGAAAACCACACTGA MKRRALIQNYSKIVGGISTEVGVQPHRTPRKYSAGMFEGCGILEHCHEIRSKNPHIVFITKTKSGSARMEKVKNDLNFDCGFCVSNYWGGGDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWMKRVRGGTTIAERLDRFLANDEFRSLFRNIGISHLNKHGSDHHPIVASMAKSGSTKEVFKSEGIKALFAAETYRKPH Homology
BLAST of Lag0000458 vs. NCBI nr
Match: MBA0699030.1 (hypothetical protein [Gossypium aridum]) HSP 1 Score: 100.9 bits (250), Expect = 1.4e-17 Identity = 63/156 (40.38%), Postives = 85/156 (54.49%), Query Frame = 0
BLAST of Lag0000458 vs. NCBI nr
Match: MBA0667752.1 (hypothetical protein [Gossypium klotzschianum]) HSP 1 Score: 94.0 bits (232), Expect = 1.7e-15 Identity = 60/151 (39.74%), Postives = 82/151 (54.30%), Query Frame = 0
BLAST of Lag0000458 vs. NCBI nr
Match: XP_030495196.1 (uncharacterized protein LOC115710989 [Cannabis sativa]) HSP 1 Score: 93.6 bits (231), Expect = 2.2e-15 Identity = 53/144 (36.81%), Postives = 80/144 (55.56%), Query Frame = 0
BLAST of Lag0000458 vs. NCBI nr
Match: XP_021855734.1 (uncharacterized protein LOC110795065 [Spinacia oleracea]) HSP 1 Score: 92.8 bits (229), Expect = 3.8e-15 Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 0
BLAST of Lag0000458 vs. NCBI nr
Match: MBA0631995.1 (hypothetical protein [Gossypium davidsonii]) HSP 1 Score: 92.8 bits (229), Expect = 3.8e-15 Identity = 59/151 (39.07%), Postives = 82/151 (54.30%), Query Frame = 0
BLAST of Lag0000458 vs. ExPASy TrEMBL
Match: A0A7J8YIC1 (DUF4283 domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_000703 PE=4 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 6.8e-18 Identity = 63/156 (40.38%), Postives = 85/156 (54.49%), Query Frame = 0
BLAST of Lag0000458 vs. ExPASy TrEMBL
Match: A0A7J8VYU1 (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_000795 PE=4 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 8.3e-16 Identity = 60/151 (39.74%), Postives = 82/151 (54.30%), Query Frame = 0
BLAST of Lag0000458 vs. ExPASy TrEMBL
Match: A0A7J8T1R6 (Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_000815 PE=4 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 1.8e-15 Identity = 59/151 (39.07%), Postives = 82/151 (54.30%), Query Frame = 0
BLAST of Lag0000458 vs. ExPASy TrEMBL
Match: A0A5B6WBZ4 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_019256 PE=4 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 9.2e-15 Identity = 56/145 (38.62%), Postives = 76/145 (52.41%), Query Frame = 0
BLAST of Lag0000458 vs. ExPASy TrEMBL
Match: A0A7J6GL46 (CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_014122 PE=4 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 4.5e-14 Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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