Lag0000448 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000448
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H
Location	chr4: 7529576 .. 7529938 (+)
RNA-Seq Expression	Lag0000448
Synteny	Lag0000448

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCTGGGGAGTGATCAGCCCACTGGTGGGGTTTGGCGAAGAGAAGGTGAGCCCAAGAGGAAGCATCGAGCTGCCAGTAACATTCAGGGAAGGACTGCAGACAGTGACAAGGATGATCAATTTCCTGGTAGTAGACTGCGTCCAGCATATAATGCCATCTTGGGAAGACCCACCCTACATGGGCTTAAAGCTGTAGCCTCGACTTACCACCAAGTCCTGAAATTCCCAACCGAAGAAGGTGTAGGAGCAGTGTATGGTGAGCAAAAGATGTCGAGGGAATGCTACTTTATGGCGCTCAAGAACGTCGACAAAAAGGCTCAAGCAACGCTGCCTCGGAGAAGGTCGAAGCCGAGCATTTGA

mRNA sequence

ATGAGGCTGGGGAGTGATCAGCCCACTGGTGGGGTTTGGCGAAGAGAAGGTGAGCCCAAGAGGAAGCATCGAGCTGCCAGTAACATTCAGGGAAGGACTGCAGACAGTGACAAGGATGATCAATTTCCTGGTAGTAGACTGCGTCCAGCATATAATGCCATCTTGGGAAGACCCACCCTACATGGGCTTAAAGCTGTAGCCTCGACTTACCACCAAGTCCTGAAATTCCCAACCGAAGAAGGTGTAGGAGCAGTGTATGGTGAGCAAAAGATGTCGAGGGAATGCTACTTTATGGCGCTCAAGAACGTCGACAAAAAGGCTCAAGCAACGCTGCCTCGGAGAAGGTCGAAGCCGAGCATTTGA

Coding sequence (CDS)

ATGAGGCTGGGGAGTGATCAGCCCACTGGTGGGGTTTGGCGAAGAGAAGGTGAGCCCAAGAGGAAGCATCGAGCTGCCAGTAACATTCAGGGAAGGACTGCAGACAGTGACAAGGATGATCAATTTCCTGGTAGTAGACTGCGTCCAGCATATAATGCCATCTTGGGAAGACCCACCCTACATGGGCTTAAAGCTGTAGCCTCGACTTACCACCAAGTCCTGAAATTCCCAACCGAAGAAGGTGTAGGAGCAGTGTATGGTGAGCAAAAGATGTCGAGGGAATGCTACTTTATGGCGCTCAAGAACGTCGACAAAAAGGCTCAAGCAACGCTGCCTCGGAGAAGGTCGAAGCCGAGCATTTGA

Protein sequence

MRLGSDQPTGGVWRREGEPKRKHRAASNIQGRTADSDKDDQFPGSRLRPAYNAILGRPTLHGLKAVASTYHQVLKFPTEEGVGAVYGEQKMSRECYFMALKNVDKKAQATLPRRRSKPSI

Homology

[Close]

BLAST of Lag0000448 vs. NCBI nr
Match: XP_022144467.1 (uncharacterized protein LOC111014147 [Momordica charantia])

HSP 1 Score: 80.9 bits (198), Expect = 8.4e-12
Identity = 33/56 (58.93%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 50  AYNAILGRPTLHGLKAVASTYHQVLKFPTEEGVGAVYGEQKMSRECYFMALKNVDK 106
           +YNAILGRPT+H L+A+ STYHQ +KFPT  GVG + GEQ++SRECY+ ++++ D+
Sbjct: 194 SYNAILGRPTMHMLRAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMRDNDR 249

[Close]

BLAST of Lag0000448 vs. NCBI nr
Match: XP_022157402.1 (uncharacterized protein LOC111024109 [Momordica charantia])

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-11
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 50  AYNAILGRPTLHGLKAVASTYHQVLKFPTEEGVGAVYGEQKMSRECYFMALKNVDKKAQA 109
           AYNAI+GRP +H L+AV STYHQVLK+PT  G+  V GEQK SRECY  A+K     A  
Sbjct: 44  AYNAIIGRPLIHDLRAVPSTYHQVLKYPTSAGIATVRGEQKTSRECYATAMKGTTTCAAV 103

Query: 110 T 111
           T
Sbjct: 104 T 104

[Close]

BLAST of Lag0000448 vs. NCBI nr
Match: XP_022155902.1 (uncharacterized protein LOC111022905 [Momordica charantia])

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-11
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 48  RPAYNAILGRPTLHGLKAVASTYHQVLKFPTEEGVGAVYGEQKMSRECYFMALKNVDK 106
           + +YNAILGR T+H LKA+ STYHQ +KFPT  GVG + GEQ++SRECY+ ++K  D+
Sbjct: 207 KSSYNAILGRLTMHMLKAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMKGNDR 264

[Close]

BLAST of Lag0000448 vs. NCBI nr
Match: XP_022155186.1 (uncharacterized protein LOC111022321 [Momordica charantia])

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-11
Identity = 34/56 (60.71%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 50  AYNAILGRPTLHGLKAVASTYHQVLKFPTEEGVGAVYGEQKMSRECYFMALKNVDK 106
           +YNAILGRPT+H LKA+ STYHQ  KFPT  GVG + GEQ++SRECY  ++++ D+
Sbjct: 147 SYNAILGRPTMHMLKAIPSTYHQSXKFPTXGGVGEIKGEQRVSRECYXTSMRDNDR 202

[Close]

BLAST of Lag0000448 vs. NCBI nr
Match: XP_022158687.1 (uncharacterized protein LOC111025147 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-11
Identity = 33/56 (58.93%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 50  AYNAILGRPTLHGLKAVASTYHQVLKFPTEEGVGAVYGEQKMSRECYFMALKNVDK 106
           +YNAILGR T+H LKA+ STYHQ +KFPT  GVG + GEQ++SRECY+ +++  D+
Sbjct: 147 SYNAILGRSTMHMLKAIPSTYHQSMKFPTSGGVGKIKGEQRVSRECYYTSMRGNDR 202

The following BLAST results are available for this feature:

BLAST of Lag0000448 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144467.1	8.4e-12	58.93	uncharacterized protein LOC111014147 [Momordica charantia]	[more]
XP_022157402.1	1.4e-11	60.66	uncharacterized protein LOC111024109 [Momordica charantia]	[more]
XP_022155902.1	2.4e-11	58.62	uncharacterized protein LOC111022905 [Momordica charantia]	[more]
XP_022155186.1	2.4e-11	60.71	uncharacterized protein LOC111022321 [Momordica charantia]	[more]
XP_022158687.1	3.2e-11	58.93	uncharacterized protein LOC111025147 [Momordica charantia]	[more]

BLAST of Lag0000448 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000448.1	Lag0000448.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process