Lag0000427 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000427
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr4: 7061325 .. 7061702 (+)
RNA-Seq ExpressionLag0000427
SyntenyLag0000427
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACATTCTTCAAACTACGGAGCAGCAACAATGGGAATGGCAATCCTGATTCTGACGCTGATCAGCGCCAGCAGCTGCAATGCTACTTCTCAAATTCCTTCCAACTTGGGCAACGAGACCACTGCCACTGTGGCATCGACACTGTGCGAAGGCCGCATGGAAGAATGCCTCACCGGAGAAGACAATGGCGAGTCCCCGTTTCAGAGCTTGCTAGACATATATAAATCGGCTACTGGAAACACCCACAATCCGAATAAAACGCCATGTGATCGGCCGGACTCAAGGTATGAGGATTGTCTGGGCAAAAAGGGCAAAATCAAACACCCTCAACCTTGTAGCACATATGGGCGCACGAGCACCTGTCCAAGTAATTAG

mRNA sequence

ATGGGACATTCTTCAAACTACGGAGCAGCAACAATGGGAATGGCAATCCTGATTCTGACGCTGATCAGCGCCAGCAGCTGCAATGCTACTTCTCAAATTCCTTCCAACTTGGGCAACGAGACCACTGCCACTGTGGCATCGACACTGTGCGAAGGCCGCATGGAAGAATGCCTCACCGGAGAAGACAATGGCGAGTCCCCGTTTCAGAGCTTGCTAGACATATATAAATCGGCTACTGGAAACACCCACAATCCGAATAAAACGCCATGTGATCGGCCGGACTCAAGGTATGAGGATTGTCTGGGCAAAAAGGGCAAAATCAAACACCCTCAACCTTGTAGCACATATGGGCGCACGAGCACCTGTCCAAGTAATTAG

Coding sequence (CDS)

ATGGGACATTCTTCAAACTACGGAGCAGCAACAATGGGAATGGCAATCCTGATTCTGACGCTGATCAGCGCCAGCAGCTGCAATGCTACTTCTCAAATTCCTTCCAACTTGGGCAACGAGACCACTGCCACTGTGGCATCGACACTGTGCGAAGGCCGCATGGAAGAATGCCTCACCGGAGAAGACAATGGCGAGTCCCCGTTTCAGAGCTTGCTAGACATATATAAATCGGCTACTGGAAACACCCACAATCCGAATAAAACGCCATGTGATCGGCCGGACTCAAGGTATGAGGATTGTCTGGGCAAAAAGGGCAAAATCAAACACCCTCAACCTTGTAGCACATATGGGCGCACGAGCACCTGTCCAAGTAATTAG

Protein sequence

MGHSSNYGAATMGMAILILTLISASSCNATSQIPSNLGNETTATVASTLCEGRMEECLTGEDNGESPFQSLLDIYKSATGNTHNPNKTPCDRPDSRYEDCLGKKGKIKHPQPCSTYGRTSTCPSN
Homology
BLAST of Lag0000427 vs. NCBI nr
Match: KAG6607070.1 (hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-13
Identity = 55/124 (44.35%), Postives = 68/124 (54.84%), Query Frame = 0

Query: 1   MGHSSNYG-----AATMGMAILILTLISASSCNATSQIPSNLGNETTATVASTLCEGRME 60
           MGHSSN G     AA   M + IL ++S S C+  S  PS+ GN T A  AS  C+GR+E
Sbjct: 1   MGHSSNSGAVMAAAAAAAMGVFIL-MLSGSHCSVASPTPSSYGNITVAAAASMWCDGRVE 60

Query: 61  ECLTGEDNGESPFQSLL-DIYKSATGNTHNPNKTPCDRPDSRYEDCLGKKGKIKHPQPCS 119
           EC+T ED+GES F SLL    K  +  T N NK  C+RP   Y+ C   +        C 
Sbjct: 61  ECVTREDDGESAFPSLLASTPKFISFPTRNRNKPVCERPGD-YKSCFNARRTNTKNDNCG 120

BLAST of Lag0000427 vs. NCBI nr
Match: KAG6607071.1 (hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.3 bits (207), Expect = 7.9e-13
Identity = 53/123 (43.09%), Postives = 66/123 (53.66%), Query Frame = 0

Query: 1   MGHSSNYG----AATMGMAILILTLISASSCNATSQIPSNLGNETTATVASTLCEGRMEE 60
           MGHSSN G    AA MG+ IL+L   S S CN  S  PS+ GN T A  AS  C+GR+EE
Sbjct: 1   MGHSSNSGGVMAAAAMGVFILVL---SGSDCNVASPTPSSYGNNTVAAAASMWCDGRVEE 60

Query: 61  CLTGEDNGESPFQSL-LDIYKSATGNTHNPNKTPCDRPDSRYEDCLGKKGKIKHPQPCST 119
           C+T E +  S F SL     K  + ++ N NK  C+RPD  Y  C   +    +P  C  
Sbjct: 61  CVTREGDSASAFPSLQTSTRKYISPSSVNSNKAVCERPD-EYRSCFNPRRSNPNPNNCGR 119

BLAST of Lag0000427 vs. NCBI nr
Match: KAG7011063.1 (hypothetical protein SDJN02_27861, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-07
Identity = 47/135 (34.81%), Postives = 67/135 (49.63%), Query Frame = 0

Query: 1   MGHSSNYGAATM---GMAILILTLISASSCNATSQIPSNLGNETTATVASTLCEGRMEEC 60
           MG +SN  AAT+    M IL + L+           P  + +      A+  C+GR+E C
Sbjct: 1   MGITSNTMAATLLTPSMTILFIILLLN---------PPTISHAAINKTAAEWCDGRLENC 60

Query: 61  LTGEDNGESPF-------QSLLDIYKSATGNTHNPNK---TPCDRPDSRYEDCLGKKGKI 120
           L G+ N +S F       + LLD     T NT+NP+K     C+RP  RY+ CLG+K  I
Sbjct: 61  LIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRP-PRYDSCLGQKTSI 120

Query: 121 KHPQPCSTYGRTSTC 123
            +P+ C T  R + C
Sbjct: 121 PNPENCDTRNRVNPC 125

BLAST of Lag0000427 vs. NCBI nr
Match: KAG6607065.1 (hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-07
Identity = 47/135 (34.81%), Postives = 67/135 (49.63%), Query Frame = 0

Query: 1   MGHSSNYGAATM---GMAILILTLISASSCNATSQIPSNLGNETTATVASTLCEGRMEEC 60
           MG +SN  AAT+    M IL + L+           P  + +      A+  C+GR+E C
Sbjct: 1   MGITSNTMAATLLTPSMTILFIILLLN---------PPTISHAAINKTAAEWCDGRLENC 60

Query: 61  LTGEDNGESPF-------QSLLDIYKSATGNTHNPNK---TPCDRPDSRYEDCLGKKGKI 120
           L G+ N +S F       + LLD     T NT+NP+K     C+RP  RY+ CLG+K  I
Sbjct: 61  LIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRP-PRYDGCLGQKNII 120

Query: 121 KHPQPCSTYGRTSTC 123
            +P+ C T  R + C
Sbjct: 121 PNPENCDTRNRVNPC 125

BLAST of Lag0000427 vs. NCBI nr
Match: KAF5457628.1 (hypothetical protein F2P56_021717 [Juglans regia])

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-05
Identity = 43/119 (36.13%), Postives = 65/119 (54.62%), Query Frame = 0

Query: 14  MAILILTLISASSCNATSQIPSNLGNETTATVASTLCEGRMEECLTGEDNG----ESPFQ 73
           +A+LIL L++A+SC   + +   + + ++ T     C+GR++ECL  ED       +P+ 
Sbjct: 20  IAMLILLLLNANSCCGGAAVGILVKSNSSTTFG---CDGRLDECLMEEDLELELLINPYI 79

Query: 74  S-LLDIYKSATGNTHNPNK--TPCDRPDSRYEDCLGKKGKIKHPQPCSTYGRTSTCPSN 126
           S +L    S+TG T NPNK   PC +P+  Y  C+GKK  +     CS Y R    PSN
Sbjct: 80  SRILGAGHSSTGGTQNPNKPALPCGKPEDPYSKCIGKK-NVNKESHCSKYNRG---PSN 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6607070.11.6e-1344.35hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607071.17.9e-1343.09hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7011063.11.3e-0734.81hypothetical protein SDJN02_27861, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6607065.12.2e-0734.81hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF5457628.12.1e-0536.13hypothetical protein F2P56_021717 [Juglans regia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000427.1Lag0000427.1mRNA