Lag0000405 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000405
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Description50S ribosomal protein L2, chloroplastic
Locationchr4: 6295382 .. 6295774 (+)
RNA-Seq ExpressionLag0000405
SyntenyLag0000405
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGTCCATCTCCGAAGTTACGTGTGAACAAATTGGCACGCCCAGTGGGACAATCTCTACCTCTCATCTCTCTCTCTTATCTCAAAACACAAGTGTAA

mRNA sequence

ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGTCCATCTCCGAAGTTACGTGTGAACAAATTGGCACGCCCAGTGGGACAATCTCTACCTCTCATCTCTCTCTCTTATCTCAAAACACAAGTGTAA

Coding sequence (CDS)

ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGTCCATCTCCGAAGTTACGTGTGAACAAATTGGCACGCCCAGTGGGACAATCTCTACCTCTCATCTCTCTCTCTTATCTCAAAACACAAGTGTAA

Protein sequence

MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKSPSPKLRVNKLARPVGQSLPLISLSYLKTQV
Homology
[Close]
BLAST of Lag0000405 vs. NCBI nr
Match: QGW14145.1 (ribosomal protein L2 [Acer tataricum subsp. ginnala] >QGW14146.1 ribosomal protein L2 [Acer tataricum subsp. ginnala] >QGW14232.1 50S ribosomal protein L2 [Acer tataricum subsp. ginnala])

HSP 1 Score: 209.5 bits (532), Expect = 1.7e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 100
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 99

[Close]
BLAST of Lag0000405 vs. NCBI nr
Match: YP_009715670.1 (ribosomal protein L2 [Schotia brachypetala] >YP_009715692.1 ribosomal protein L2 [Schotia brachypetala] >QGL08782.1 ribosomal protein L2 [Schotia brachypetala] >QGL08805.1 ribosomal protein L2 [Schotia brachypetala])

HSP 1 Score: 209.5 bits (532), Expect = 1.7e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 100
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 99

[Close]
BLAST of Lag0000405 vs. NCBI nr
Match: QGX42562.1 (ribosomal protein L2 [Toxicodendron vernicifluum] >QGX42589.1 ribosomal protein L2 [Toxicodendron vernicifluum])

HSP 1 Score: 209.5 bits (532), Expect = 1.7e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 100
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 99

[Close]
BLAST of Lag0000405 vs. NCBI nr
Match: QWY87477.1 (ribosomal protein L2 [Pterocarpus soyauxii] >QWY87498.1 ribosomal protein L2 [Pterocarpus soyauxii])

HSP 1 Score: 209.5 bits (532), Expect = 1.7e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 100
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 99

[Close]
BLAST of Lag0000405 vs. NCBI nr
Match: CUR01841.1 (rpl2 [Acacia diallaga] >CUR01871.1 rpl2 [Acacia diallaga])

HSP 1 Score: 209.5 bits (532), Expect = 1.7e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 100
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 99

[Close]
BLAST of Lag0000405 vs. ExPASy Swiss-Prot
Match: Q09MB2 (50S ribosomal protein L2, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.2e-53
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 100
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 99

[Close]
BLAST of Lag0000405 vs. ExPASy Swiss-Prot
Match: Q4VZK5 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.2e-53
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 100
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 99

[Close]
BLAST of Lag0000405 vs. ExPASy Swiss-Prot
Match: Q0ZIX7 (50S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-52
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRN AVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNRAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 100
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 99

[Close]
BLAST of Lag0000405 vs. ExPASy Swiss-Prot
Match: A9L9D7 (50S ribosomal protein L2, chloroplastic OS=Lemna minor OX=4472 GN=rpl2 PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.5e-52
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNGAVD +VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGAVDRKVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 100
           RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK
Sbjct: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 99

[Close]
BLAST of Lag0000405 vs. ExPASy Swiss-Prot
Match: A0A377 (50S ribosomal protein L2-A, chloroplastic OS=Coffea arabica OX=13443 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.2e-52
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 0 

Query: 1   MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
           MAIHLYKTSTPSTRNG VDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1   MAIHLYKTSTPSTRNGTVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61  RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 100
           RKIDFRR EKDIYGRIVTIEYDPNRNAYICLIHYGDGEK
Sbjct: 61  RKIDFRRTEKDIYGRIVTIEYDPNRNAYICLIHYGDGEK 99

The following BLAST results are available for this feature:
BLAST of Lag0000405 vs. NCBI nr
Match NameE-valueIdentityDescription
QGW14145.11.7e-50100.00ribosomal protein L2 [Acer tataricum subsp. ginnala] >QGW14146.1 ribosomal prote... [more]
YP_009715670.11.7e-50100.00ribosomal protein L2 [Schotia brachypetala] >YP_009715692.1 ribosomal protein L2... [more]
QGX42562.11.7e-50100.00ribosomal protein L2 [Toxicodendron vernicifluum] >QGX42589.1 ribosomal protein ... [more]
QWY87477.11.7e-50100.00ribosomal protein L2 [Pterocarpus soyauxii] >QWY87498.1 ribosomal protein L2 [Pt... [more]
CUR01841.11.7e-50100.00rpl2 [Acacia diallaga] >CUR01871.1 rpl2 [Acacia diallaga][more]
BLAST of Lag0000405 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q09MB22.2e-53100.0050S ribosomal protein L2, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl2-A PE=... [more]
Q4VZK52.2e-53100.0050S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=... [more]
Q0ZIX71.9e-5298.9950S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A PE=... [more]
A9L9D72.5e-5297.9850S ribosomal protein L2, chloroplastic OS=Lemna minor OX=4472 GN=rpl2 PE=2 SV=1[more]
A0A3773.2e-5297.9850S ribosomal protein L2-A, chloroplastic OS=Coffea arabica OX=13443 GN=rpl2-A P... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002171Ribosomal protein L2SMARTSM01383Ribosomal_L2_2coord: 40..107
e-value: 6.1E-22
score: 88.9
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 3..99
IPR022666Ribosomal Proteins L2, RNA binding domainPFAMPF00181Ribosomal_L2coord: 40..100
e-value: 3.2E-23
score: 81.5
NoneNo IPR availableGENE3D2.40.50.140coord: 1..103
e-value: 3.1E-34
score: 119.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availablePANTHERPTHR13691:SF5550S RIBOSOMAL PROTEIN L2, CHLOROPLASTICcoord: 3..99
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000405.1Lag0000405.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016740 transferase activity