Lag0000384 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000384
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Locationchr4: 5516978 .. 5517364 (+)
RNA-Seq ExpressionLag0000384
SyntenyLag0000384
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTTTCATCCAACACCATGGCTGCAACACTGCTGATACCATCAATGGCAATTCCGATCATGATTCTGCTGCTGAACCCAACCATTTCCGATGCGGCCATCAACGAAACTGCATCCGAGTGGTGCGACGGTGGCCTCGAAAACTGCCTCGTGGGCGACCTGAACTCCGATTGGGAGTTTCTGATGGGGACAGAGAGCAGCCGGATGCTGCGGCAGTCCATTAAGTTCCAAACTTCCAACACCAACGACCCTAACAAAGCTTCGGTTAAATCATGTGGTCGGCTGCCGCGCTACGACAGCTGCCTTGGCGACAAAAGGGTTATCAAGAAGCCTGAAAATTGCGACATTTTCAATCGCAGAAATCCCTGTCCGAAGCTCCTCTAA

mRNA sequence

ATGGGATTTTCATCCAACACCATGGCTGCAACACTGCTGATACCATCAATGGCAATTCCGATCATGATTCTGCTGCTGAACCCAACCATTTCCGATGCGGCCATCAACGAAACTGCATCCGAGTGGTGCGACGGTGGCCTCGAAAACTGCCTCGTGGGCGACCTGAACTCCGATTGGGAGTTTCTGATGGGGACAGAGAGCAGCCGGATGCTGCGGCAGTCCATTAAGTTCCAAACTTCCAACACCAACGACCCTAACAAAGCTTCGGTTAAATCATGTGGTCGGCTGCCGCGCTACGACAGCTGCCTTGGCGACAAAAGGGTTATCAAGAAGCCTGAAAATTGCGACATTTTCAATCGCAGAAATCCCTGTCCGAAGCTCCTCTAA

Coding sequence (CDS)

ATGGGATTTTCATCCAACACCATGGCTGCAACACTGCTGATACCATCAATGGCAATTCCGATCATGATTCTGCTGCTGAACCCAACCATTTCCGATGCGGCCATCAACGAAACTGCATCCGAGTGGTGCGACGGTGGCCTCGAAAACTGCCTCGTGGGCGACCTGAACTCCGATTGGGAGTTTCTGATGGGGACAGAGAGCAGCCGGATGCTGCGGCAGTCCATTAAGTTCCAAACTTCCAACACCAACGACCCTAACAAAGCTTCGGTTAAATCATGTGGTCGGCTGCCGCGCTACGACAGCTGCCTTGGCGACAAAAGGGTTATCAAGAAGCCTGAAAATTGCGACATTTTCAATCGCAGAAATCCCTGTCCGAAGCTCCTCTAA

Protein sequence

MGFSSNTMAATLLIPSMAIPIMILLLNPTISDAAINETASEWCDGGLENCLVGDLNSDWEFLMGTESSRMLRQSIKFQTSNTNDPNKASVKSCGRLPRYDSCLGDKRVIKKPENCDIFNRRNPCPKLL
Homology
BLAST of Lag0000384 vs. NCBI nr
Match: KAG6607065.1 (hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-38
Identity = 86/125 (68.80%), Postives = 95/125 (76.00%), Query Frame = 0

Query: 1   MGFSSNTMAATLLIPSMAIPIMILLLN-PTISDAAINETASEWCDGGLENCLVGDLNSDW 60
           MG +SNTMAATLL PSM I  +ILLLN PTIS AAIN+TA+EWCDG LENCL+GDLNSD 
Sbjct: 1   MGITSNTMAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDS 60

Query: 61  EFLMGTESSRMLRQSIKFQTSNTNDPNKASVKSCGRLPRYDSCLGDKRVIKKPENCDIFN 120
           EFLM TE+SRML     FQT NTN+P+K S   C R PRYD CLG K +I  PENCD  N
Sbjct: 61  EFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDGCLGQKNIIPNPENCDTRN 120

Query: 121 RRNPC 125
           R NPC
Sbjct: 121 RVNPC 125

BLAST of Lag0000384 vs. NCBI nr
Match: KAG7011063.1 (hypothetical protein SDJN02_27861, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.5 bits (428), Expect = 1.9e-38
Identity = 87/125 (69.60%), Postives = 95/125 (76.00%), Query Frame = 0

Query: 1   MGFSSNTMAATLLIPSMAIPIMILLLN-PTISDAAINETASEWCDGGLENCLVGDLNSDW 60
           MG +SNTMAATLL PSM I  +ILLLN PTIS AAIN+TA+EWCDG LENCL+GDLNSD 
Sbjct: 1   MGITSNTMAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDS 60

Query: 61  EFLMGTESSRMLRQSIKFQTSNTNDPNKASVKSCGRLPRYDSCLGDKRVIKKPENCDIFN 120
           EFLM TE+SRML     FQT NTN+P+K S   C R PRYDSCLG K  I  PENCD  N
Sbjct: 61  EFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDSCLGQKTSIPNPENCDTRN 120

Query: 121 RRNPC 125
           R NPC
Sbjct: 121 RVNPC 125

BLAST of Lag0000384 vs. NCBI nr
Match: KGN53798.1 (hypothetical protein Csa_014747 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 6.0e-32
Identity = 80/122 (65.57%), Postives = 87/122 (71.31%), Query Frame = 0

Query: 5   SNTMAATLLIPSMAIPIMILLLNPTISDAAINETASEWCDG-GLENCLVGDLNSDWEFLM 64
           SN+MAATL +PSMA  I ILLLNP IS+A +N+T S+WCD  GLENCLVGDLNS  EFLM
Sbjct: 6   SNSMAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLM 65

Query: 65  GTESSRML-RQSIKFQTSNTNDPNKASVKSCGRLPRYDSCLGDKRVIKKPENCDIFNRRN 124
            TESS ML  Q + FQT   ND NK SV  C R PRYDSCLG KR I  PE C   NR N
Sbjct: 66  LTESSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVN 125

BLAST of Lag0000384 vs. NCBI nr
Match: KAA0042447.1 (hypothetical protein E6C27_scaffold266G00270 [Cucumis melo var. makuwa] >TYK03509.1 hypothetical protein E5676_scaffold121G001310 [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 2.1e-29
Identity = 69/117 (58.97%), Postives = 83/117 (70.94%), Query Frame = 0

Query: 8   MAATLLIPSMAIPIMILLLNPTISDAAINETASEWCDGGLENCLVGDLNSDWEFLMGTES 67
           MA T  IP+MAI I+ILL N    +  +NETA EWC G  ENCL+GD +SD EFLM T++
Sbjct: 1   MATTFSIPTMAIIILILLFNTIGCNTTVNETAPEWCYGS-ENCLIGDESSDSEFLMETDT 60

Query: 68  SRMLRQSIKFQTSNTNDPNKASVKSCGRLPRYDSCLGDKRVIKKPENCDIFNRRNPC 125
           SRML      QT +TN+PN+ SV  CGR PRYDSC+G+KR I  PENCD+ NR NPC
Sbjct: 61  SRMLLDFQNLQTPSTNNPNRQSVPECGRPPRYDSCIGEKRSISNPENCDVRNRENPC 116

BLAST of Lag0000384 vs. NCBI nr
Match: KAE8649335.1 (hypothetical protein Csa_014907 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 8.9e-28
Identity = 70/120 (58.33%), Postives = 81/120 (67.50%), Query Frame = 0

Query: 8   MAATLLIPSMAIPIMILLLNPTISDAAINETASEWCDGGLENCLVGDLNSDWEFLMGTES 67
           MA T  IP+MAI I+ LL NPT  +  +NET SEWC G  ENCLVGD + D EFLM TE+
Sbjct: 1   MATTFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGS-ENCLVGDESLDSEFLMETET 60

Query: 68  SRMLRQSIKFQTSNTNDPNKASVKSCGRLPRYDSCLGDKRVIKKPENCDIFNRRNPCPKL 127
           SRML      QT  T DPN+ SV  CGR PRYDSC G++R I  PENCD+ NR NP  +L
Sbjct: 61  SRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPYNEL 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6607065.11.1e-3868.80hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7011063.11.9e-3869.60hypothetical protein SDJN02_27861, partial [Cucurbita argyrosperma subsp. argyro... [more]
KGN53798.16.0e-3265.57hypothetical protein Csa_014747 [Cucumis sativus][more]
KAA0042447.12.1e-2958.97hypothetical protein E6C27_scaffold266G00270 [Cucumis melo var. makuwa] >TYK0350... [more]
KAE8649335.18.9e-2858.33hypothetical protein Csa_014907 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000384.1Lag0000384.1mRNA