Lag0000380 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000380
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr4: 5474423 .. 5475105 (-)
RNA-Seq ExpressionLag0000380
SyntenyLag0000380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATCAGAACAAAACGAGACCGATATGGTGACGACCCGCCACTGGAAATTCGAACTATCCTAGGAGGTACTGTTGGGGGAGATTCTATTTGTAAAAGGAAAGCGGCGGCTCGAGAGGCTCGCCTCGAGCCAAAACACAAGGTATGTATTCTCTTTAATTTGTAAAAGTTAGACCTGCCCTGGAATTCATAGAGAAAGAAGTTGTTGGAATCCATCACCCTCACAATGATGCCTTGGTGGTAAATTTGATCATCGCCAATGCAAAAGTCCATCGAGTCCTGATCGACAAAGGAAGTTCCACTGATGTTCTCTCCATGAATGTATTTGAGGCCATGAAGCTAGGAAAAGACCGCTTGAGGCCAAGTCTCACACCATTGGTGGGATTCGGAGGAGAAAAAGTGAGCCCTGAAAGAAGCATTGAGCTCCCATTTACCTTCAGAGAAGGGTGAAAAATGCTCACGAAGATGGTCAACTTTCTGGTAGTAGATTGCATCTCATCTTATAACGCCATATTCGGAAGGTCGACCCTGCATGAACTCAAAGCCATGGCGTCAACTTACCACCAGATCTTGAAGTTTCCCACTGAGGAGGTATACGAGTCGTGCACAGAGAATAGTGGATATCTAGAGAGTGCTACTTCATTGCACTCAAGGAAACAACCAAAGCAGCCCCGTGCTTGA

mRNA sequence

ATGTCGATCAGAACAAAACGAGACCGATATGGTGACGACCCGCCACTGGAAATTCGAACTATCCTAGGAGTTAGACCTGCCCTGGAATTCATAGAGAAAGAAGTTGTTGGAATCCATCACCCTCACAATGATGCCTTGGTGGTAAATTTGATCATCGCCAATGCAAAAGTCCATCGAGTCCTGATCGACAAAGGAAGTTCCACTGATGTTCTCTCCATGAATGTATTTGAGGCCATGAAGCTAGGAAAAGACCGCTTGAGGCCAAGTCTCACACCATTGGTGGGATTCGGAGGAGAAAAAGTGAGCCCTGAAAGAAGCATTGAGCTCCCATTTACCTTCAGAGAAGGGTCGACCCTGCATGAACTCAAAGCCATGGCGTCAACTTACCACCAGATCTTGAAGTTTCCCACTGAGGAGGTATACGAGTCGTGCACAGAGAATAGTGGATATCTAGAGAGTGCTACTTCATTGCACTCAAGGAAACAACCAAAGCAGCCCCGTGCTTGA

Coding sequence (CDS)

ATGTCGATCAGAACAAAACGAGACCGATATGGTGACGACCCGCCACTGGAAATTCGAACTATCCTAGGAGTTAGACCTGCCCTGGAATTCATAGAGAAAGAAGTTGTTGGAATCCATCACCCTCACAATGATGCCTTGGTGGTAAATTTGATCATCGCCAATGCAAAAGTCCATCGAGTCCTGATCGACAAAGGAAGTTCCACTGATGTTCTCTCCATGAATGTATTTGAGGCCATGAAGCTAGGAAAAGACCGCTTGAGGCCAAGTCTCACACCATTGGTGGGATTCGGAGGAGAAAAAGTGAGCCCTGAAAGAAGCATTGAGCTCCCATTTACCTTCAGAGAAGGGTCGACCCTGCATGAACTCAAAGCCATGGCGTCAACTTACCACCAGATCTTGAAGTTTCCCACTGAGGAGGTATACGAGTCGTGCACAGAGAATAGTGGATATCTAGAGAGTGCTACTTCATTGCACTCAAGGAAACAACCAAAGCAGCCCCGTGCTTGA

Protein sequence

MSIRTKRDRYGDDPPLEIRTILGVRPALEFIEKEVVGIHHPHNDALVVNLIIANAKVHRVLIDKGSSTDVLSMNVFEAMKLGKDRLRPSLTPLVGFGGEKVSPERSIELPFTFREGSTLHELKAMASTYHQILKFPTEEVYESCTENSGYLESATSLHSRKQPKQPRA
Homology
BLAST of Lag0000380 vs. NCBI nr
Match: XP_022155873.1 (uncharacterized protein LOC111022886 [Momordica charantia])

HSP 1 Score: 129.0 bits (323), Expect = 3.8e-26
Identity = 72/152 (47.37%), Postives = 90/152 (59.21%), Query Frame = 0

Query: 12  DDPPLEIRTILGVRPA-LEFIEKEVVGIHHPHNDALVVNLIIANAKVHRVLIDKGSSTDV 71
           + P  EIRTI+  +PA LEF E E   + HPHNDALV+ L IANAKVHR+L+D GSST +
Sbjct: 91  NSPVREIRTIMEEQPAKLEFSEDEATHLFHPHNDALVITLKIANAKVHRILVDGGSSTYI 150

Query: 72  LSMNVFEAMKLGKDRLRPSLTPLVGFGGEKVSPERSIELPFTFREG-------------- 131
           +S+  ++AM LG+  L+ S  PLVGFGGE+V PE  IELP  F  G              
Sbjct: 151 ISLTAYKAMDLGEKALKSSPVPLVGFGGERVIPEGRIELPVMFGSGPKSIIKMVDFLVVY 210

Query: 132 -----------STLHELKAMASTYHQILKFPT 138
                        +H LK + STYHQ +KFPT
Sbjct: 211 YASSYNVILGRPKMHMLKEIPSTYHQSMKFPT 242

BLAST of Lag0000380 vs. NCBI nr
Match: XP_022146774.1 (uncharacterized protein LOC111015901 [Momordica charantia])

HSP 1 Score: 129.0 bits (323), Expect = 3.8e-26
Identity = 66/135 (48.89%), Postives = 86/135 (63.70%), Query Frame = 0

Query: 28  LEFIEKEVVGIHHPHNDALVVNLIIANAKVHRVLIDKGSSTDVLSMNVFEAMKLGKDRLR 87
           +EF E E   + HPHNDALV+ L IANAKVHR+L+D GSSTD+ S+  ++AM LG++ L+
Sbjct: 41  IEFSEGEATHVLHPHNDALVITLKIANAKVHRILVDGGSSTDISSLTAYKAMDLGEEVLK 100

Query: 88  PSLTPLVGFGGEKVSPERSIELPFTFR-------------------------EGSTLHEL 138
            SLTPL+GFGGE++ P+  IELP TFR                         E  T+H L
Sbjct: 101 SSLTPLIGFGGERIIPKGRIELPITFRSEPKSITRMVDFLVVDYTSSYNTILERPTMHML 160

BLAST of Lag0000380 vs. NCBI nr
Match: XP_022154102.1 (uncharacterized protein LOC111021438 [Momordica charantia])

HSP 1 Score: 122.9 bits (307), Expect = 2.7e-24
Identity = 64/135 (47.41%), Postives = 83/135 (61.48%), Query Frame = 0

Query: 28  LEFIEKEVVGIHHPHNDALVVNLIIANAKVHRVLIDKGSSTDVLSMNVFEAMKLGKDRLR 87
           +EF +  V  + HPHNDAL++ L IANAKVHR+L+D GSS D +S+  ++AM LGK+ L+
Sbjct: 41  IEFSKDVVTHLLHPHNDALLITLKIANAKVHRILVDGGSSADXISLTAYKAMDLGKEXLK 100

Query: 88  PSLTPLVGFGGEKVSPERSIELPFTFREG-------------------------STLHEL 138
            SLTPL+GFGGE+V P   IELP TF  G                          T++ L
Sbjct: 101 SSLTPLIGFGGERVIPXGXIELPVTFESGPKSITKMVDFLVVDYTSSYNAILERXTMYML 160

BLAST of Lag0000380 vs. NCBI nr
Match: XP_022150858.1 (uncharacterized protein LOC111018902 [Momordica charantia])

HSP 1 Score: 122.1 bits (305), Expect = 4.6e-24
Identity = 66/135 (48.89%), Postives = 81/135 (60.00%), Query Frame = 0

Query: 28  LEFIEKEVVGIHHPHNDALVVNLIIANAKVHRVLIDKGSSTDVLSMNVFEAMKLGKDRLR 87
           +EF+E EV  I HPHNDALV+NL IANAKVH +L+D GSS D++S+  ++ M LG+  L+
Sbjct: 98  IEFLEDEVTHIFHPHNDALVINLKIANAKVHWILVDGGSSPDIISLTAYKTMDLGERGLK 157

Query: 88  PSLTPLVGFGGEKVSPERSIELPFTFREG-------------------------STLHEL 138
            S  PLVGFGGE V PE  IELP TF  G                          T+H L
Sbjct: 158 SSPAPLVGFGGEWVIPEGRIELPVTFGSGPKSITKMVDFLVVDYASSCNAILGRPTMHML 217

BLAST of Lag0000380 vs. NCBI nr
Match: XP_022158432.1 (uncharacterized protein LOC111024924 [Momordica charantia])

HSP 1 Score: 118.6 bits (296), Expect = 5.1e-23
Identity = 62/135 (45.93%), Postives = 82/135 (60.74%), Query Frame = 0

Query: 28  LEFIEKEVVGIHHPHNDALVVNLIIANAKVHRVLIDKGSSTDVLSMNVFEAMKLGKDRLR 87
           +EF E E   + H HNDALV+ L IANAKVHR+L+++GSS D++S+  ++AM LG+  L+
Sbjct: 41  IEFSEDEATHLLHSHNDALVITLKIANAKVHRILVNEGSSADIISLTTYKAMDLGEKVLK 100

Query: 88  PSLTPLVGFGGEKVSPERSIELPFTFREG-------------------------STLHEL 138
            S  PL+GFGGE+V PE  IELP TF  G                          T+H L
Sbjct: 101 SSPAPLIGFGGERVIPEGIIELPVTFGSGPKSITKMVDFLVVNYTSSYNAILGRPTIHML 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155873.13.8e-2647.37uncharacterized protein LOC111022886 [Momordica charantia][more]
XP_022146774.13.8e-2648.89uncharacterized protein LOC111015901 [Momordica charantia][more]
XP_022154102.12.7e-2447.41uncharacterized protein LOC111021438 [Momordica charantia][more]
XP_022150858.14.6e-2448.89uncharacterized protein LOC111018902 [Momordica charantia][more]
XP_022158432.15.1e-2345.93uncharacterized protein LOC111024924 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000380.1Lag0000380.1mRNA