Lag0000339 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000339
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H
Locationchr4: 4556545 .. 4556892 (-)
RNA-Seq ExpressionLag0000339
SyntenyLag0000339
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCTGGTGGGGTTTGGCAGAGAAAAAGTAAGCCCGAGAGGAAGCGTCGAACTGCCAGTGACGTTTGGGGAAGGACTGCAGACAGTAACGAGAATGATCAACTTTCTAGTGGTAGATTGCGTCCCAGCATATAATGCCATCTTGGGGCGACCCACCCTACATGGACTTAAAGTTGTAGCCTCAACCTACCACCAAGTCTTGAAATTCTCGACCGAAGAAGGTGTAGGAGCAGTGTATGGCGAGCAAAAGATGTCGAGGGAATGTTACTTTATGACACTCAAGAACATTGACAGAAAGGTTCAAGCAACGTTAGCCTCGGGAGATGGCCGAGGTCGAGCATTTTAG

mRNA sequence

ATGCCGCTGGTGGGGTTTGGCAGAGAAAAAGTAAGCCCGAGAGGAAGCGTCGAACTGCCAGTGACGTTTGGGGAAGGACTGCAGACAGTAACGAGAATGATCAACTTTCTAGTGGTAGATTGCGTCCCAGCATATAATGCCATCTTGGGGCGACCCACCCTACATGGACTTAAAGTTGTAGCCTCAACCTACCACCAAGTCTTGAAATTCTCGACCGAAGAAGGTGTAGGAGCAGTGTATGGCGAGCAAAAGATGTCGAGGGAATGTTACTTTATGACACTCAAGAACATTGACAGAAAGGTTCAAGCAACGTTAGCCTCGGGAGATGGCCGAGGTCGAGCATTTTAG

Coding sequence (CDS)

ATGCCGCTGGTGGGGTTTGGCAGAGAAAAAGTAAGCCCGAGAGGAAGCGTCGAACTGCCAGTGACGTTTGGGGAAGGACTGCAGACAGTAACGAGAATGATCAACTTTCTAGTGGTAGATTGCGTCCCAGCATATAATGCCATCTTGGGGCGACCCACCCTACATGGACTTAAAGTTGTAGCCTCAACCTACCACCAAGTCTTGAAATTCTCGACCGAAGAAGGTGTAGGAGCAGTGTATGGCGAGCAAAAGATGTCGAGGGAATGTTACTTTATGACACTCAAGAACATTGACAGAAAGGTTCAAGCAACGTTAGCCTCGGGAGATGGCCGAGGTCGAGCATTTTAG

Protein sequence

MPLVGFGREKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVASTYHQVLKFSTEEGVGAVYGEQKMSRECYFMTLKNIDRKVQATLASGDGRGRAF
Homology
BLAST of Lag0000339 vs. NCBI nr
Match: XP_022158687.1 (uncharacterized protein LOC111025147 [Momordica charantia])

HSP 1 Score: 127.5 bits (319), Expect = 7.5e-26
Identity = 57/98 (58.16%), Postives = 76/98 (77.55%), Query Frame = 0

Query: 2   PLVGFGREKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVA 61
           PL+GFGRE+V P G +EL VTFG G ++VT+M++FLVVD   +YNAILGR T+H LK + 
Sbjct: 105 PLIGFGRERVIPEGRIELHVTFGSGPKSVTKMMDFLVVDYTSSYNAILGRSTMHMLKAIP 164

Query: 62  STYHQVLKFSTEEGVGAVYGEQKMSRECYFMTLKNIDR 100
           STYHQ +KF T  GVG + GEQ++SRECY+ +++  DR
Sbjct: 165 STYHQSMKFPTSGGVGKIKGEQRVSRECYYTSMRGNDR 202

BLAST of Lag0000339 vs. NCBI nr
Match: XP_022144467.1 (uncharacterized protein LOC111014147 [Momordica charantia])

HSP 1 Score: 124.8 bits (312), Expect = 4.9e-25
Identity = 55/98 (56.12%), Postives = 76/98 (77.55%), Query Frame = 0

Query: 2   PLVGFGREKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVA 61
           PLVGFG E+V P G +E PVTFG G ++VT+M++ LVV+   +YNAILGRPT+H L+ + 
Sbjct: 152 PLVGFGGERVIPEGRIEXPVTFGSGPKSVTKMVDXLVVNYTSSYNAILGRPTMHMLRAIP 211

Query: 62  STYHQVLKFSTEEGVGAVYGEQKMSRECYFMTLKNIDR 100
           STYHQ +KF T  GVG + GEQ++SRECY+ ++++ DR
Sbjct: 212 STYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMRDNDR 249

BLAST of Lag0000339 vs. NCBI nr
Match: XP_022155186.1 (uncharacterized protein LOC111022321 [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 8.3e-25
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 0

Query: 2   PLVGFGREKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVA 61
           PLVGFG E+V   G +ELPVTFG G ++VT+M++FLVV+   +YNAILGRPT+H LK + 
Sbjct: 105 PLVGFGGERVILEGRIELPVTFGSGPKSVTKMVDFLVVNYTSSYNAILGRPTMHMLKAIP 164

Query: 62  STYHQVLKFSTEEGVGAVYGEQKMSRECYFMTLKNIDR 100
           STYHQ  KF T  GVG + GEQ++SRECY  ++++ DR
Sbjct: 165 STYHQSXKFPTXGGVGEIKGEQRVSRECYXTSMRDNDR 202

BLAST of Lag0000339 vs. NCBI nr
Match: XP_022150858.1 (uncharacterized protein LOC111018902 [Momordica charantia])

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-24
Identity = 55/98 (56.12%), Postives = 74/98 (75.51%), Query Frame = 0

Query: 2   PLVGFGREKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVA 61
           PLVGFG E V P G +ELPVTFG G +++T+M++FLVVD   + NAILGRPT+H LK + 
Sbjct: 162 PLVGFGGEWVIPEGRIELPVTFGSGPKSITKMVDFLVVDYASSCNAILGRPTMHMLKAIP 221

Query: 62  STYHQVLKFSTEEGVGAVYGEQKMSRECYFMTLKNIDR 100
           S YHQ +KF T  G+G + GEQ++SRECY+ ++K  D+
Sbjct: 222 SRYHQSIKFPTPGGIGEIKGEQRVSRECYYASMKGNDK 259

BLAST of Lag0000339 vs. NCBI nr
Match: XP_022146774.1 (uncharacterized protein LOC111015901 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-23
Identity = 50/98 (51.02%), Postives = 74/98 (75.51%), Query Frame = 0

Query: 2   PLVGFGREKVSPRGSVELPVTFGEGLQTVTRMINFLVVDCVPAYNAILGRPTLHGLKVVA 61
           PL+GFG E++ P+G +ELP+TF    +++TRM++FLVVD   +YN IL RPT+H L+ + 
Sbjct: 105 PLIGFGGERIIPKGRIELPITFRSEPKSITRMVDFLVVDYTSSYNTILERPTMHMLRAIP 164

Query: 62  STYHQVLKFSTEEGVGAVYGEQKMSRECYFMTLKNIDR 100
           STYHQ +KF T  GVG + GEQ++SRECY+ +++  D+
Sbjct: 165 STYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMRGNDK 202

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158687.17.5e-2658.16uncharacterized protein LOC111025147 [Momordica charantia][more]
XP_022144467.14.9e-2556.12uncharacterized protein LOC111014147 [Momordica charantia][more]
XP_022155186.18.3e-2558.16uncharacterized protein LOC111022321 [Momordica charantia][more]
XP_022150858.11.1e-2456.12uncharacterized protein LOC111018902 [Momordica charantia][more]
XP_022146774.12.0e-2351.02uncharacterized protein LOC111015901 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000339.1Lag0000339.1mRNA