Lag0000292 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000292
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr4: 3080548 .. 3081801 (-)
RNA-Seq ExpressionLag0000292
SyntenyLag0000292
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAATTATATTGAGATGGCTCTACAACTGAAGGAAGGCTTTAAAGAGGGTTTTTTAGCCATCATGACTCAGATCGAGGAATTGAAGGCTGAGAAATTCGTGACCAATAAAGAATAGGAAAAGAAGTCTGATGAGGCAACAAATGCAGTGGTGGCTCCGGCAGAAGTTGCTGCCCTAGACCCGCATACTTAGCTAACTAAGGTGTTAGCCCCTGTTTTTGACCTTCGACTGCGGAAACTTGAAATTCTAGTGTTTTCTGGAGCAAATCCTTATGAATGGCTTCATCAGGTTGAGAGATATTTCGTTGTCAATCATCTGGCTGACTCTGAGAAGATCGAAGCGGTGGTACTTTGTTTAGATGGAGTTGCTCTCAAATGGCATTATTATGAAGAACGACGACACCATATCGATTGTTGGGAAGAGTTTCGTCGGCTTCTTTTGAGGCAATTCTTGCCGACTAAAGAGGGAAGCCTTCACGAGCGATTTTTTGCTCTAAAGAAATTAAACTATTGTTTCTGCTTATCGTGAAAAGTTTGAGGACTATTCCGTGCCATTGGAAAACTTGGATAACGCAACCCTTGTCGATGGGCTGAAAAAGGATATCAAGATCAAGTTACGAGTGGCAAGGCCTATTGGGCTTGACATGATTATGGAGACGGCCCAGAAGTTAGAAGATGAGTTGATGCATTTTGAAGAAGGGCCGGTTGCAAATATAGCAAACTGGCCCAAAATATATACAGATTTAGCAGCCGGTAGAAAGATTTGCAAAAATAGCAAAATTTTAAGTTCTGAAATGTGTATTTACTAAAATGTCCTTTCTTTCTGATAGAAAATTTTTCTATCACTGATAGAATCTATCAGTGATAGAAAGTATTTCTATCCCTGATAGAATAAAGTTTCTATCACTGATAGAAAGTTTTCTATCACTGATAGATTCTATCAGTGGTAGAAAAATTTTCTATTAGTGATAGAAAGTTTCTATCAACTTCTCATTTCTTTTTATTAGCTTCTCATTTCTTTCTATCAGTTCTTCTCCCAAATTTCCACGGTAAAGATGATCACCGCCGCCGTTTCGATGGCGGCGCTGCAACGAATGGGGACTCTCTACATGCGAGGTACTCGAGCCATGGCGGACCTCGCGGTCGTCCACGTACCGGAAAGACGTCGGAGAAGACGACTCCGTATTCAACTTCCCCTCACCGTTTTCTCAGAGACTGTTTTCTATCAGTGATAGAAAACTTCTATCACTGA

mRNA sequence

ATGGGGAATTATATTGAGATGGCTCTACAACTGAAGGAAGGCTTTAAAGAGGTGTTTTCTGGAGCAAATCCTTATGAATGGCTTCATCAGGTTGAGAGATATTTCGTTGTCAATCATCTGGCTGACTCTGAGAAGATCGAAGCGGTGTTTGAGGACTATTCCGTGCCATTGGAAAACTTGGATAACGCAACCCTTGTCGATGGGCTGAAAAAGGATATCAAGATCAAGTTACGAGTGGCAAGGCCTATTGGGCTTGACATGATTATGGAGACGGCCCAGAAGTTAGAAGATGAGTTGATGCATTTTGAAGAAGGGCCGGTTGCAAATATAGCAAACTGGCCCAAAATATATACAGATTTAGCAGCCGTTCTTCTCCCAAATTTCCACGGTAAAGATGATCACCGCCGCCGTTTCGATGGCGGCGCTGCAACGAATGGGGACTCTCTACATGCGAGGTACTCGAGCCATGGCGGACCTCGCGGTCGTCCACGTACCGGAAAGACGTCGGAGAAGACGACTCCGTATTCAACTTCCCCTCACCGTTTTCTCAGAGACTGTTTTCTATCAGTGATAGAAAACTTCTATCACTGA

Coding sequence (CDS)

ATGGGGAATTATATTGAGATGGCTCTACAACTGAAGGAAGGCTTTAAAGAGGTGTTTTCTGGAGCAAATCCTTATGAATGGCTTCATCAGGTTGAGAGATATTTCGTTGTCAATCATCTGGCTGACTCTGAGAAGATCGAAGCGGTGTTTGAGGACTATTCCGTGCCATTGGAAAACTTGGATAACGCAACCCTTGTCGATGGGCTGAAAAAGGATATCAAGATCAAGTTACGAGTGGCAAGGCCTATTGGGCTTGACATGATTATGGAGACGGCCCAGAAGTTAGAAGATGAGTTGATGCATTTTGAAGAAGGGCCGGTTGCAAATATAGCAAACTGGCCCAAAATATATACAGATTTAGCAGCCGTTCTTCTCCCAAATTTCCACGGTAAAGATGATCACCGCCGCCGTTTCGATGGCGGCGCTGCAACGAATGGGGACTCTCTACATGCGAGGTACTCGAGCCATGGCGGACCTCGCGGTCGTCCACGTACCGGAAAGACGTCGGAGAAGACGACTCCGTATTCAACTTCCCCTCACCGTTTTCTCAGAGACTGTTTTCTATCAGTGATAGAAAACTTCTATCACTGA

Protein sequence

MGNYIEMALQLKEGFKEVFSGANPYEWLHQVERYFVVNHLADSEKIEAVFEDYSVPLENLDNATLVDGLKKDIKIKLRVARPIGLDMIMETAQKLEDELMHFEEGPVANIANWPKIYTDLAAVLLPNFHGKDDHRRRFDGGAATNGDSLHARYSSHGGPRGRPRTGKTSEKTTPYSTSPHRFLRDCFLSVIENFYH
Homology
[Close]
BLAST of Lag0000292 vs. NCBI nr
Match: ESR37449.1 (hypothetical protein CICLE_v10030074mg [Citrus clementina])

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-04
Identity = 33/107 (30.84%), Postives = 55/107 (51.40%), Query Frame = 0 

Query: 16  KEVFSGANPYEWLHQVERYFVVNHLADSEKIEAVFEDYS----------------VPLEN 75
           K +F G+NP  W+ + ERYF VN L++ EK+EA    +                 +  E 
Sbjct: 88  KPLFDGSNPDGWILKAERYFSVNRLSNEEKLEAAIIAFEGDALLWYQWENRKRSMMVWEE 147

Query: 76  LDNAT-------LVDGLKKDIKIKLRVARPIGLDMIMETAQKLEDEL 100
           + N T        ++GLK +I++++R+  P  L   M+ AQK+E++L
Sbjct: 148 IKNITDEQALGNFINGLKPEIRVEVRIMEPSNLGRAMDLAQKIEEKL 194

[Close]
BLAST of Lag0000292 vs. NCBI nr
Match: KAF7810390.1 (Retrotransposable element Tf2 [Senna tora])

HSP 1 Score: 56.6 bits (135), Expect = 2.8e-04
Identity = 48/187 (25.67%), Postives = 81/187 (43.32%), Query Frame = 0 

Query: 18  VFSGANPYEWLHQVERYFVVNHLADSEKIEAV----------------------FEDYSV 77
           +F+G +P  WL +VERYF+VN +   EK++ V                      FE  S 
Sbjct: 84  IFNGEDPIGWLFRVERYFIVNAVPGEEKLDDVAVCMEGKALNWLQCTVGDYRERFELLSA 143

Query: 78  PLENLDNATLV----DGLKKDIKIKLRVARPIGLDMIMETAQKLEDELMHFEEGPVANIA 137
           PL++     L+    +GLK++++ +LR+ +   L  IM+ +QK+E      E   V N  
Sbjct: 144 PLKDATKEILIGFYQNGLKEEVRAELRMTQAQNLIDIMDMSQKVE------ERNEVVNKL 203

Query: 138 NWPKIYTDLAAVLLPNFHGKDDHRRRFDGGAATNGDSLHARYSSHGGPRGRPRTGKTSEK 179
              ++   L  + LP +             + +N   L+A  S+    +     G T ++
Sbjct: 204 REEQMKKALRPIQLPKWSVAPTKPNFTKFTSLSNSTLLNANASASAATKSSDVKGNTEQR 263

[Close]
BLAST of Lag0000292 vs. ExPASy TrEMBL
Match: V4UDR6 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10030074mg PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.0e-05
Identity = 33/107 (30.84%), Postives = 55/107 (51.40%), Query Frame = 0 

Query: 16  KEVFSGANPYEWLHQVERYFVVNHLADSEKIEAVFEDYS----------------VPLEN 75
           K +F G+NP  W+ + ERYF VN L++ EK+EA    +                 +  E 
Sbjct: 88  KPLFDGSNPDGWILKAERYFSVNRLSNEEKLEAAIIAFEGDALLWYQWENRKRSMMVWEE 147

Query: 76  LDNAT-------LVDGLKKDIKIKLRVARPIGLDMIMETAQKLEDEL 100
           + N T        ++GLK +I++++R+  P  L   M+ AQK+E++L
Sbjct: 148 IKNITDEQALGNFINGLKPEIRVEVRIMEPSNLGRAMDLAQKIEEKL 194

The following BLAST results are available for this feature:
BLAST of Lag0000292 vs. NCBI nr
Match NameE-valueIdentityDescription
ESR37449.11.2e-0430.84hypothetical protein CICLE_v10030074mg [Citrus clementina][more]
KAF7810390.12.8e-0425.67Retrotransposable element Tf2 [Senna tora][more]
BLAST of Lag0000292 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0000292 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
V4UDR66.0e-0530.84Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10030074mg PE=4 ... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..178

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000292.1Lag0000292.1mRNA