Lag0000268 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000268
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr4: 2654674 .. 2655880 (-)
RNA-Seq ExpressionLag0000268
SyntenyLag0000268
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTCAAATCCTATGGAAAAATGTTGGGCCTTTGAGGGTGGAGCTCGGCCTCGGCCTTGGCATGAGGCCAACTAGCTCCTCTACGTTGTTTGCTTGCTTGTTTTCTATCCCAAGGATATTTGAACTCAGTTGGGGACTTGGGGAGGTTGAGGGCATGCGTCAACCTCTCTTCAAGTGTTGTGTCAATCCTAGGGGTGCGTACACTCTTCTGGGGAAACTTAGGGAGGCCAAGGAAATTCCCAAGCCTCTCTTCAGTGTTGTATTCATCTTAGGGGTGCGTACACTCTTTTGGGGAAAAAGCTTGGGGAGGCCTAGGAAGTTCCTGGGCCTTTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTAGGGAGGCCTAAGAAGTTTTCGGGCCTCTCTTCAAGCATCATGGTCATCCTAGGGGTGCGTACACTTTTTGGGGAAAAGCTTGGGGAGGCCTAGAAAGTTCCCGGGCCTCTCTTCAAGCATCGTGGTCACCCAAGGGTGCGTACACTCTTCTGGGTCAAAGCTTGGGGAGGCCTAGAAAGTTTCCGGGCCTCTCTTCAAGCATCGTGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCAGGCCTCTCTTTAAGCATTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCAGGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTTTGAGGAAAAGCTTGGGGAGGCCTAGGAAGTTCTCGGGCCTCTCTTCAAGCATCGTGGTCATCCCAGAGGTGCATACACTCTTCTGGGGAAAATCTTGGGGAGGCCTAGGAAGTTCCGGGCCTCGCTTCAAGTATCGTGGTCATCCAGGGGTGCGTACACTCTTTTGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCAGGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGAGAAAGGCTTAGAATCTCATCTCGAGGGTGCGTGCACTCAGTCGAGGTCTTGGAATCTCATCTGGAATCTCATCTCGAGGGTGTGTACACTCGATCGAGGCCTTGGAGAGCTAAGTTGAAAATATTAAGGATCCAACCTCTGCTAGGATCAGTCTATGCTTTTCCATAA

mRNA sequence

ATGCGTCAAATCCTATGGAAAAATGTTGGGCCTTTGAGGGTGGAGCTCGGCCTCGGCCTTGGCATGAGGCCAACTAGCTCCTCTACGTTGTTTGCTTGCTTGTTTTCTATCCCAAGGATATTTGAACTCAGTTGGGGACTTGGGGAGGTTGAGGGCATGCGTCAACCTCTCTTCAAGTGTTGTGTCAATCCTAGGGGTGCGTACACTCTTCTGGGGAAACTTAGGGAGGCCAAGGAAATTCCCAAGCCTCTCTTCAGTGTTGTATTCATCTTAGGGGTGCGTACACTCTTTTGGGGAAAAAGCTTGGGGAGGCCTAGGAAGTTCCTGGGCCTTTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTAGGGAGGCCTAAGAAGTTTTCGGGCCTCTCTTCAAGCATCATGGTCATCCTAGGGAAAGTTTCCGGGCCTCTCTTCAAGCATCGTGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCAGGCCTCTCTTTAAGCATTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCAGGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGAGGTGCATACACTCTTCTGGGGAAAATCTTGGGGAGGCCTAGGAAGTTCCGGGCCTCGCTTCAAGTATCGTGGTCATCCAGGGGTGCGTACACTCTTTTGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCAGGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGAGAAAGGCTTAGAATCTCATCTCGAGGGTGCGTGCACTCAGTCGAGGTCTTGGAATCTCATCTGGAATCTCATCTCGAGGGTGTGTACACTCGATCGAGGCCTTGGAGAGCTAAGTTGAAAATATTAAGGATCCAACCTCTGCTAGGATCAGTCTATGCTTTTCCATAA

Coding sequence (CDS)

ATGCGTCAAATCCTATGGAAAAATGTTGGGCCTTTGAGGGTGGAGCTCGGCCTCGGCCTTGGCATGAGGCCAACTAGCTCCTCTACGTTGTTTGCTTGCTTGTTTTCTATCCCAAGGATATTTGAACTCAGTTGGGGACTTGGGGAGGTTGAGGGCATGCGTCAACCTCTCTTCAAGTGTTGTGTCAATCCTAGGGGTGCGTACACTCTTCTGGGGAAACTTAGGGAGGCCAAGGAAATTCCCAAGCCTCTCTTCAGTGTTGTATTCATCTTAGGGGTGCGTACACTCTTTTGGGGAAAAAGCTTGGGGAGGCCTAGGAAGTTCCTGGGCCTTTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTAGGGAGGCCTAAGAAGTTTTCGGGCCTCTCTTCAAGCATCATGGTCATCCTAGGGAAAGTTTCCGGGCCTCTCTTCAAGCATCGTGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCAGGCCTCTCTTTAAGCATTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCAGGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGAGGTGCATACACTCTTCTGGGGAAAATCTTGGGGAGGCCTAGGAAGTTCCGGGCCTCGCTTCAAGTATCGTGGTCATCCAGGGGTGCGTACACTCTTTTGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCAGGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGAGAAAGGCTTAGAATCTCATCTCGAGGGTGCGTGCACTCAGTCGAGGTCTTGGAATCTCATCTGGAATCTCATCTCGAGGGTGTGTACACTCGATCGAGGCCTTGGAGAGCTAAGTTGAAAATATTAAGGATCCAACCTCTGCTAGGATCAGTCTATGCTTTTCCATAA

Protein sequence

MRQILWKNVGPLRVELGLGLGMRPTSSSTLFACLFSIPRIFELSWGLGEVEGMRQPLFKCCVNPRGAYTLLGKLREAKEIPKPLFSVVFILGVRTLFWGKSLGRPRKFLGLSSSIVVIPGVRTLFWGKSLGRPKKFSGLSSSIMVILGKVSGPLFKHRGHPRGAYTLLGKSLGRPRKFPGLSLSIVVIPGVRTLFWGKAWGGLGSSQASLQASWSSQGGAYTLLGKILGRPRKFRASLQVSWSSRGAYTLLGKAWGGLGSSQASLQASWSSQGCVHSSGERLRISSRGCVHSVEVLESHLESHLEGVYTRSRPWRAKLKILRIQPLLGSVYAFP
Homology
The following BLAST results are available for this feature:
BLAST of Lag0000268 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0000268 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0000268 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0000268 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017956AT hook, DNA-binding motifSMARTSM00384AT_hook_2coord: 99..111
e-value: 120.0
score: 3.6
coord: 169..181
e-value: 14.0
score: 8.8
coord: 225..237
e-value: 47.0
score: 5.8
coord: 127..139
e-value: 28.0
score: 7.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000268.1Lag0000268.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding