Lag0000265 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000265
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RNase H domain-containing protein
Location	chr4: 2528721 .. 2535333 (+)
RNA-Seq Expression	Lag0000265
Synteny	Lag0000265

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAGGCCGAGGCCGACCATCCAGAGGCCAAGGCCGAGCTCCGCCCCTAGAGGCCCAGGTACGAAGTTAGTTTCTCCTTACTCAAAAAATGCACGTCCAAGGTATTGAACGCGTATTTTGAGTGGGGGGTTGGGAGTAAGGACAAACCGAGTCCATCATAATCATGGTCATGTTGCGATAATTCTGATTTTCCTTTCTTACTTATTCAAGTTAGGATAACGTTATGAATATCAGTGGAGCTATTGGGGCAATTACTTATTTTCATTTTGTATAACACATGTCCACAACTTTTCTCCATGGTACAATGTTGACACTTGCAAATTTTATAAAGTTCTTTATACCGTGTTTGTGTAAAGCATTTTTCCATAGGATATGGTGACTCTTGTAGAGGCCAAACTTCCGTACTTTCCGTTGGAAAGAGACTAAATTCTTGCAGAGAGGTTGACACATGCCCTCAACCTCCCCAAGCTTTTTTCTCCAAAAGAGTGTACGCACCCCTGGGATGAATCCAATACAGAAGAAATGCTCAGCCTCATGCCAAGGTCGAGGCCGAGCATCCCAGTTCCGAAGCCAACCCTCAGGCGCACATTCAAAGCAGCATGATTGGTTTGAGTTCTCAATCACTTTACTTTTTTAGCACAGCCGAAGCGCTCAAAGCTGCAAGGAGATGCTTAAGGTAGGGTCAGGCAAGTCTACACATAAGCCTAGCTGTTGAGCAAACAAACAGTACAGAGAAGCTGGTCAGCCTCATGCCAAGGCCGAGGCCGGCCATCCACCTTCAAAAGGCCAGGTATGAAATTAGTCCTTCTTGCTCGAAAAAATGCAACGCTTGAAGTAATAAATGCCCTTCCATTCCTTTGTTGTAATCATCGTGCAACTCTCCCATTACTTTCCAGTAAGGACTGATATATGAATGCAGGGGACTAAGTGTTGAGCTGACAGAGGCCAAAGGCCAAGGCCGATCCTAGCCTCTTCCCTCATTCTTCTTTTGCAGAGATTAACTTTTCAATGCAGGATTGTGAAATCTTTTGCTTATCCTATTTTTTTACTTGTGGATAAGCCCCGAATCTGGAATGAAGCGTTTCGAATGATCAAGTACAGGGGTCTAGCTGTTGTGCTCAGCCTTTTCCCAAGGTCGACTAGATAAACCAAAATGGGAAGCTGCTGTGCTCGGCCTCTTTTTGAGGCCGAGGCCGACCAGATAAGCTGAAGAGGGAGATTGCTGTGCTCGGCCTCTTCCCGAGGCCGACCAGAGCCATTGTTGTAATCTCTCAACTTTTCTCATTTCCATTTCACCTAACCCCTTTTCAGGGAGTGTCTACTTTGTCCAGTTTGTCCTATCTCACAGGATAACAAGGAATCATACATAAGTCGGCATGGAACGAGAGTTATACTCTTAAATCAGGCTTAAGGAGCTCAACCCTGCAGAAGGTCAAGTGTTACTGGACCGCACTAAAAGCTGTCAAGCCACACAGGGCCGAGACCGACCAGAGAATGATCCGAGGTCGAGTAGCACACACTTCCACCAACACTGAATCTGAACTTATGGAGTTTTAGGGTTTTTCGTTTATTGCATTCTATCATTATTCAGGAGTGTGCGCAAGGCAACCGACTCAAGCATCAAGACATGCGAGCCCGGACTACCGAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGTCTGGACCAACGAGTCTACCTCACCTCCTCTGGCTTGAGCATCTTTACACTAGGCGAGCCTGGACTACCGAGTCTACCTCACCACACCTGGCATGAGTCCATACACTTCATCTAAGTCAAGCTCACCCTACGGAAGTCGGGACCGAACACCTCTTGCCAAGGCCGAGCACCTCCTGCCAAGGCCGAGCACCTCTTGCCGAGGCCAAGCACAAACTTTAAAGGTATTCTCCTATTTCCTCAAACTATACTTTATGTTTCAGTGAAGTTCTACTTAAGATTTGGGGCTACAAAGGGGATATGCACTCCCTATTAAACAAAAAGCACACTAGCTTAACATGTCTAACCAATAGTTACATGTTCTAGCTTATCCACTCATTATTTTCCTATAAGGACTGACTAATAAATGCAGGAAGTAAAGTGTTTTGCTAACAGAGGCTTGAGACCGAGGCCGACCCTAGCAACTTCCCTCACTTTTCTTTTGCAGAAAACAACTTTTCTATGCAGGAGCTCGAAATCTTTTGTGCTTTCATATTTTCATGGACAGGCCCTAGATCTGAAGCACTCCGAATGACCCAGTACGGGGAAAATTAGAAAACTGCTCAGCCTCTTCCCGAGGTCGAGACCGACCAGGCGAAAGGGAGGTAGCTGTGCTCGGCCTCCTCCCGAGGCCGAGGCCGACCAACACCACTTTTGTAATCTCTCACCCTTTTTCATTTCCATTTCATCTAACCCCTATTCAGGGAGTGTCTACTTCTATCCTACTTCACAGGATGACAACAAAGCTACACGTAAGCCAGCCCAGGGCAAGGGTCATTACTCTTAAATCGGGCTTAAAGAGCTCAACTTATAGCAATAAGTCACCCCGAATCCCAATTCAAGAGTGGGGGCTTAATGTTATAGGCAATTTTGGACCACCCCGATATACAAGGAGCTGACGAGGACCACCGGGGAGAAATCGGGCTGAAAGATGGACCAAGGAGGCAGAACCAGCGAATGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTTGGCCCTACCCCCTGCCGAGGTCGAGCACATGGTCGGCCTCGGCCCGCTCACGCGGGCCGAGTTCGTTCGATGTCGTCTGGTCCCCACCGCCTTTGATCGCCTCGGTTTCGCCTGGTTTGACCTAAAACGCCTCTGAATCCCTAAAAACCTAGGAGGATGAGCATGTATTTATATCCCTCTTCGCCACTGAAGAAGGGACTCCGAATTCTATCCCTAAACACTATTCTATATTTTCTACTCTCTCCTCCTACTCTTACTTTTCCACTCCCTACTGTTCTGTTTGCTGACTTAAGCATCGGAGCCAGTGCGGCGAGCACCACACCTGTGTGCAGGTTTACTGTCTTGCAGGCCACGTCTTCCCCCCTCATCTACAAATTTACCGTTCGTGGCACGTGAAGGTCAGGTGAGTTCCTCTGGCCAAAATCGACCATCAACACTCTGAATACTTTCTGTTTTAATATTATTTGGGCAATCGTACGCTTGCGGAATAGTGCAACACTTAGTAACTCAAAAAAAATTTCCATGATCTTCGATACTATGTTTGAGATGTGCCGTTACTTTCCCTAAGTTTAAATTTCTTATTATGAATATTAGGTCCGTATTAGTAATATTTTGTTTGTATTTTAGTTATATTATGTGGGCCTCTCTAATATATAATAGAAATGTCAATTTCCCATCGTATTGATGTTGAATCCTTGAGCATATATATATATCGATTGAAATGTGAACGAAAATTTAAAACCTCGCTTAAAATTACTATTGTAATGACTAGTTAGAAAATTAAGATGTTATTTTTGTTAAATGTTTTTTACCGTTCTTTTAGTTAAACAAGAATTTTGTTAAAAAGTTGTTTTTTTTTCTTTGAAACTGTTCAAAAGTTGTTAAAATGTTGTTAAAAAGTTGGTTGAATAAATGACTCACCGAATTTCTCTTCTGCAAAAATATGTATATCTATATCAACATAAGCATAGTTCTACTAGCATAAAACACTTGTATTAATGACGATGAGGAGGTAATGCAGACCTTGGATCATGCTCTTTTTCAGTGTTCGAGAGCTCTAGCGGTTTGGGGAATTATATCCCCAATTTTGACGGTAGACTGTGTTGACTATTTTGATATTAAGGACCGATGGTTGCGGCAATCTGAGGACTCGAGTTTATGTCCAGAGCGTATTTGTGTGGGGGCTTGGGCAATCTGGAATGACAAAAATAGTCGGGTTCATAACATCCCAGTTCCGTCTGTAGAAATGCATTGTGAGTGGATCATCAAATACTTGCACGAGTATTGGCAGGCGATTCCGAAAGGTTCTGTAAATATTCAGAATGTGGAGGATGTGCACAATATTATCTCAAATGGAGAAGATTTTATCTTGAATACTGATGCAACCTTTCTGGGTGCGACGCGAGCTATTGGGATTGGATTAGTTTTGCGAGATAAATTCGGTCATATGAAGGCCGCACAATCTTCACAATCCCATGTTTATACTTCTCCGTTGGGGGTGGAAGCTGTTGCAGTTCTCCATGGTCTCTATATGGCTAAGACATTGGGGGTAAATCGTGTAACGATCTTGTCCGATTCTCTAAAGTTAATCAAATCAGTCAATGTTGAGATTCAATGTGAGTCTTGTATAAAGACTACTGTAACAACCTGTAAAAAAAAAAAAAAAAAAAAAAAAGGGGAAACGTGGGCAGGCGGTCAAAAAAGAAAAGAGAAAATGGGGGGAAACTTCCCCCCAAATTCGGTCAATCGACCGGTTTAAAAAAAAAAAAATTTGAATCTCTCTCTGCTCCATCTCTCCCTCACTTCAGCCCTCTCTCTCTCAACACTCTCTCTCTCCCTCGCTCCCTCTCAGTCGCCGCAAGCCGCCGCCGCCGCCGCCTCCACCGTCGCTCGCGCAGCACGCCGTCGCGAATCGCCGCGCCGGTAACGTCTCTTTCTCTCTCTCTCTCTCGTCTCTTTCTCCCTCGATCTCTCTCTCTCTCTCTCAGCCTCTCTCTCTCTGTGTAGCAGATCCGACGCGCCGCCGCCTGCAACCCACTCACGAGCTGCCGTGATCGCAAGTCGCTGTCGCCACTGTAGACGCGGACAACAGCGAGGAGGGACCATTTTTTCTGCGTTTTCGGCTGTTTTAGGCGAGTTTCCGCATTGGGTAAGTTGGTTTGAGGCTTATGTGGGTTAGTTCTTGCATTTAAACGATTACCCATTCCTTTTTCTCCCGTTCAACAAGCGTACCATTCAATTCCGCGATTCAAGCAGTGGGTCTTCAAGTTTCAGCGTGTTTGAGCAATTCCGGCTGGGTAAGTGAATTAAGTGTTTTGGTCTATTTAATGTTTAAAGGATGACCCATTGAGTTTAGCTTGATTCAAGGTGCCGTGGTGTTTGGGGAATTATCAATTTGGAGCGATTTGGATCTGGACAGCAAGCGTGGTTCTGTTTGGGTAGTTTTGGTGTTAATTTACCCTCAAATTTAAATGGGTTCATAGTTGAATGCTTGGATTAATCTCGTATTGATTTGTGATTTTTTTCCCCTCTTCGTGTAGTCTAAATACGCCTTGGAGCTAAGGATTAATTTAGAATTCATCAAGCGTTGTTAGCTAGGTAAGTAGCCAATTGGATTAAAGTTCTAAGTGTTGTCATGGATTTAACCAAGCATGGTTGGTTCTTCTTTTCTTGGAAGCATGAAAATAGTTAAGCATGCCTTGGTTAGTTGTTGTTTATAAAGTTCGCCTGCATGTAAGTAGCTTCTGGGCATGAAGTGTTTGGATTGTTTTCATTGTATGCTTCTTGGTGGTGAATTGGAGTTGGTTAAGTTTTTTTGGCTTGGTTGAATGTTCCTTGGTTCGTGGTAATGCTTACTTAATTATGGTTAGAGTGTTGTTTACTTGGGCATGACTTAAGTGTTGATATGTTTGTAGAATTTAGTAAGCATGCTTGGAATATTTGATTTATGATTGTTCTGGGATGTGTTCGTGTTATGTAGGATGGGTTGAATATTCATTGGAGTGGTGATTTGGAGTTGGGTTGATTTCTGACTCGTTTGCGTTATAGAAGTGCATCGTTGTTGTTTCCAGGTGTAGGAAAATTTTGGGTTACCCATATGCATGCGTTATGCTGCCGAATTTTGGTAGCATACGAGTGGTTTCAGGATTAGGAGTGTCGGTTGTCACCTCCATTTCTTATTCTTGTGATATGACTGAGTTGGGAAGATGCATATCAGTTAGCCTATCAGTAAGCTAGGAAGGGAATCGTTTGTGTTAAATAGGTTGCAGATAAAGATTAGTAAGTGTTAAGGGGTCCAAAGGGAAAAGAATTAAAAAAAAAAGGAAAGGAATAGGCTAGCGCCTTACAAGAGGGTCGTGTCAATTAAACACCTAGGACTGAGATGTAATAGACTGAAATGAGGAGCTTAATGGGCGGGTCTTGGCTTCGCAGTTTAGGTGCCATTTACTAACTGTGGAAGTTAATTCCTGACTTAAACCCATGAACCCCACCAGTGAAATTGTAGATTAGAGCGCTACGCGCCCATTAGTGCCTGGAGGGATGAGACTTAGCTCCACTGATTGGGTGCCATCTACCATCAGTAGGAGTAGAGACCTCCCAAACTCCCGCTTGTGCACTATCAGTGAGTTGGCAAACTTATATATATAGGTGTACCAATTGAACACGAGACCCGAACTACAGACAATGAAATGAAATGAATGAATGAAATGAAATGAATGAGAATGAGATGACCTAACCCTTAGGCCCTTAACTCGAATAAGATGTTAAAACTTTTATTGCTACTTACTGAGTATTTTCTTAAATACTCATTCTTTTCCCTTACACACAATGCAGGTAGAGGTAAAGTGTACGGAACGCGTGACGGAGAGCTGCTGAGCCATGGATCTCCTTTAGTATAA

mRNA sequence

ATGCCAAGGCCGAGGCCGACCATCCAGAGGCCAAGGCCGAGCTCCGCCCCTAGAGGCCCAGGTACGAAGTTAGTTTCTCCTTACTCAAAAAATGCACGTCCAAGAAGAAATGCTCAGCCTCATGCCAAGGTCGAGGCCGAGCATCCCAGTTCCGAAGCCAACCCTCAGGCGCACATTCAAAGCAGCATGATTGGTTTGAGTTCTCAATCACTTTACTTTTTTAGCACAGCCGAAGCGCTCAAAGCTGCAAGGAGATGCTTAAGGATTGTGAAATCTTTTGCTTATCCTATTTTTTTACTTGTGGATAAGCCCCGAATCTGGAATGAAGCGTTTCGAATGATCAAGTACAGGGGTCTAGCTGTTGTGCTCAGCCTTTTCCCAAGGCTTAAGGAGCTCAACCCTGCAGAAGGTCAAGTGTTACTGGACCGCACTAAAAGCTGTCAAGCCACACAGGGCCGAGACCGACCAGAGAATGATCCGAGGAGTGTGCGCAAGGCAACCGACTCAAGCATCAAGACATGCGAGCCCGGACTACCGAGTCTACCTCGCCTCATCCAGAGTGAGACCATCCTGGACTACCGAGTCTACCTCACCACACCTGGCATGAGTCCATACACTTCATCTAAGTCAAGCTCACCCTACGGAAGTCGGGACCGAACACCTCTTGCCAAGGCCGAGCACCTCCTGCCAAGGCCGAGCACCTCTTGCCGAGGCCAAGCACAAACTTTAAAGAGGCTTGAGACCGAGGCCGACCCTAGCAACTTCCCTCACTTTTCTTTTGCAGAAAACAACTTTTCTATGCAGGAGCTCGAAATCTTTTGTGCTTTCATATTTTCATGGACAGGCCCTAGATCTGAAGCACTCCGAATGACCCAGATGACAACAAAGCTACACGCAATTTTGGACCACCCCGATATACAAGGAGCTGACGAGGACCACCGGGGAGAAATCGGGCTGAAAGATGGACCAAGGAGGCAGAACCAGCGAATGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTTGGCCCTACCCCCTGCCGAGGTCGAGCACATGGTCGGCCTCGGCCCGCTCACGCGGGCCGAGTTCGTTCGATGTCGTCTGGTCCCCACCGCCTTTGATCGCCTCGGTTTCGCCTGGCCACGTCTTCCCCCCTCATCTACAAATTTACCGTTCGTGGCACGTGAAGGTCAGTGTTCGAGAGCTCTAGCGGTTTGGGGAATTATATCCCCAATTTTGACGGTAGACTGTGTTGACTATTTTGATATTAAGGACCGATGGTTGCGGCAATCTGAGGACTCGAGTTTATGTCCAGAGCGTATTTGTGTGGGGGCTTGGGCAATCTGGAATGACAAAAATAGTCGGGTTCATAACATCCCAGTTCCGTCTGTAGAAATGCATTGTGAGTGGATCATCAAATACTTGCACGAGTATTGGCAGGCGATTCCGAAAGGTTCTGTAAATATTCAGAATGTGGAGGATGTGCACAATATTATCTCAAATGGAGAAGATTTTATCTTGAATACTGATGCAACCTTTCTGGGTGCGACGCGAGCTATTGGGATTGGATTAGTTTTGCGAGATAAATTCGGTCATATGAAGGCCGCACAATCTTCACAATCCCATGTTTATACTTCTCCGTTGGGGGTGGAAGCTGTTGCAGTTCTCCATGGTCTCTATATGGCTAAGACATTGGGGGTAAATCGTGTAACGATCTTGTCCGATTCTCTAAAGTTAATCAAATCAGTCAATGTTGAGATTCAATCCCTCTCTCTCTCAACACTCTCTCTCTCCCTCGCTCCCTCTCAGTCGCCGCAAGCCGCCGCCGCCGCCGCCTCCACCGTCGCTCGCGCAGCACGCCGTCGCGAATCGCCGCGCCGATCCGACGCGCCGCCGCCTGCAACCCACTCACGAGCTGCCGTGATCGCAAGTCGCTGTCGCCACTGTAGACGCGGACAACAGCGAGGAGGGACCATTTTTTCTGCGTTTTCGGCTGTTTTAGGCGAGTTTCCGCATTGGAAGTGCATCGTTGTTGTTTCCAGGTGTAGGAAAATTTTGGGTTACCCATATGCATGCGTTATGCTGCCGAATTTTGGTAGCATACGAGTGGTTTCAGGATTAGGAGTGTCGGTTGTCACCTCCATTTCTTATTCTTGTGATATGACTGAGTTGGGAAGATGCATATCAGTTAGCCTATCAAGCGCTACGCGCCCATTAGTGCCTGGAGGGATGAGACTTAGCTCCACTGATTGGGTGCCATCTACCATCAGTAGGAGTAGAGACCTCCCAAACTCCCGCTTGTGCACTATCAGTAGAGGTAAAGTGTACGGAACGCGTGACGGAGAGCTGCTGAGCCATGGATCTCCTTTAGTATAA

Coding sequence (CDS)

ATGCCAAGGCCGAGGCCGACCATCCAGAGGCCAAGGCCGAGCTCCGCCCCTAGAGGCCCAGGTACGAAGTTAGTTTCTCCTTACTCAAAAAATGCACGTCCAAGAAGAAATGCTCAGCCTCATGCCAAGGTCGAGGCCGAGCATCCCAGTTCCGAAGCCAACCCTCAGGCGCACATTCAAAGCAGCATGATTGGTTTGAGTTCTCAATCACTTTACTTTTTTAGCACAGCCGAAGCGCTCAAAGCTGCAAGGAGATGCTTAAGGATTGTGAAATCTTTTGCTTATCCTATTTTTTTACTTGTGGATAAGCCCCGAATCTGGAATGAAGCGTTTCGAATGATCAAGTACAGGGGTCTAGCTGTTGTGCTCAGCCTTTTCCCAAGGCTTAAGGAGCTCAACCCTGCAGAAGGTCAAGTGTTACTGGACCGCACTAAAAGCTGTCAAGCCACACAGGGCCGAGACCGACCAGAGAATGATCCGAGGAGTGTGCGCAAGGCAACCGACTCAAGCATCAAGACATGCGAGCCCGGACTACCGAGTCTACCTCGCCTCATCCAGAGTGAGACCATCCTGGACTACCGAGTCTACCTCACCACACCTGGCATGAGTCCATACACTTCATCTAAGTCAAGCTCACCCTACGGAAGTCGGGACCGAACACCTCTTGCCAAGGCCGAGCACCTCCTGCCAAGGCCGAGCACCTCTTGCCGAGGCCAAGCACAAACTTTAAAGAGGCTTGAGACCGAGGCCGACCCTAGCAACTTCCCTCACTTTTCTTTTGCAGAAAACAACTTTTCTATGCAGGAGCTCGAAATCTTTTGTGCTTTCATATTTTCATGGACAGGCCCTAGATCTGAAGCACTCCGAATGACCCAGATGACAACAAAGCTACACGCAATTTTGGACCACCCCGATATACAAGGAGCTGACGAGGACCACCGGGGAGAAATCGGGCTGAAAGATGGACCAAGGAGGCAGAACCAGCGAATGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTTGGCCCTACCCCCTGCCGAGGTCGAGCACATGGTCGGCCTCGGCCCGCTCACGCGGGCCGAGTTCGTTCGATGTCGTCTGGTCCCCACCGCCTTTGATCGCCTCGGTTTCGCCTGGCCACGTCTTCCCCCCTCATCTACAAATTTACCGTTCGTGGCACGTGAAGGTCAGTGTTCGAGAGCTCTAGCGGTTTGGGGAATTATATCCCCAATTTTGACGGTAGACTGTGTTGACTATTTTGATATTAAGGACCGATGGTTGCGGCAATCTGAGGACTCGAGTTTATGTCCAGAGCGTATTTGTGTGGGGGCTTGGGCAATCTGGAATGACAAAAATAGTCGGGTTCATAACATCCCAGTTCCGTCTGTAGAAATGCATTGTGAGTGGATCATCAAATACTTGCACGAGTATTGGCAGGCGATTCCGAAAGGTTCTGTAAATATTCAGAATGTGGAGGATGTGCACAATATTATCTCAAATGGAGAAGATTTTATCTTGAATACTGATGCAACCTTTCTGGGTGCGACGCGAGCTATTGGGATTGGATTAGTTTTGCGAGATAAATTCGGTCATATGAAGGCCGCACAATCTTCACAATCCCATGTTTATACTTCTCCGTTGGGGGTGGAAGCTGTTGCAGTTCTCCATGGTCTCTATATGGCTAAGACATTGGGGGTAAATCGTGTAACGATCTTGTCCGATTCTCTAAAGTTAATCAAATCAGTCAATGTTGAGATTCAATCCCTCTCTCTCTCAACACTCTCTCTCTCCCTCGCTCCCTCTCAGTCGCCGCAAGCCGCCGCCGCCGCCGCCTCCACCGTCGCTCGCGCAGCACGCCGTCGCGAATCGCCGCGCCGATCCGACGCGCCGCCGCCTGCAACCCACTCACGAGCTGCCGTGATCGCAAGTCGCTGTCGCCACTGTAGACGCGGACAACAGCGAGGAGGGACCATTTTTTCTGCGTTTTCGGCTGTTTTAGGCGAGTTTCCGCATTGGAAGTGCATCGTTGTTGTTTCCAGGTGTAGGAAAATTTTGGGTTACCCATATGCATGCGTTATGCTGCCGAATTTTGGTAGCATACGAGTGGTTTCAGGATTAGGAGTGTCGGTTGTCACCTCCATTTCTTATTCTTGTGATATGACTGAGTTGGGAAGATGCATATCAGTTAGCCTATCAAGCGCTACGCGCCCATTAGTGCCTGGAGGGATGAGACTTAGCTCCACTGATTGGGTGCCATCTACCATCAGTAGGAGTAGAGACCTCCCAAACTCCCGCTTGTGCACTATCAGTAGAGGTAAAGTGTACGGAACGCGTGACGGAGAGCTGCTGAGCCATGGATCTCCTTTAGTATAA

Protein sequence

MPRPRPTIQRPRPSSAPRGPGTKLVSPYSKNARPRRNAQPHAKVEAEHPSSEANPQAHIQSSMIGLSSQSLYFFSTAEALKAARRCLRIVKSFAYPIFLLVDKPRIWNEAFRMIKYRGLAVVLSLFPRLKELNPAEGQVLLDRTKSCQATQGRDRPENDPRSVRKATDSSIKTCEPGLPSLPRLIQSETILDYRVYLTTPGMSPYTSSKSSSPYGSRDRTPLAKAEHLLPRPSTSCRGQAQTLKRLETEADPSNFPHFSFAENNFSMQELEIFCAFIFSWTGPRSEALRMTQMTTKLHAILDHPDIQGADEDHRGEIGLKDGPRRQNQRMGRAKTEGVGFLALPPAEVEHMVGLGPLTRAEFVRCRLVPTAFDRLGFAWPRLPPSSTNLPFVAREGQCSRALAVWGIISPILTVDCVDYFDIKDRWLRQSEDSSLCPERICVGAWAIWNDKNSRVHNIPVPSVEMHCEWIIKYLHEYWQAIPKGSVNIQNVEDVHNIISNGEDFILNTDATFLGATRAIGIGLVLRDKFGHMKAAQSSQSHVYTSPLGVEAVAVLHGLYMAKTLGVNRVTILSDSLKLIKSVNVEIQSLSLSTLSLSLAPSQSPQAAAAAASTVARAARRRESPRRSDAPPPATHSRAAVIASRCRHCRRGQQRGGTIFSAFSAVLGEFPHWKCIVVVSRCRKILGYPYACVMLPNFGSIRVVSGLGVSVVTSISYSCDMTELGRCISVSLSSATRPLVPGGMRLSSTDWVPSTISRSRDLPNSRLCTISRGKVYGTRDGELLSHGSPLV

Homology

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BLAST of Lag0000265 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 4.2e-11
Identity = 60/200 (30.00%), Postives = 87/200 (43.50%), Query Frame = 0


Query: 398  CSRALAVWGIISPILTV----DCVDYFDIKDRWLRQSEDSSLCPERICVGAWAIWNDKNS 457
            C RA  +W  + P LT     D + + ++      Q E   L      +  W IWND+NS
Sbjct: 1190 CKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDL--NLAAITGWGIWNDRNS 1249

Query: 458  RVHNIPVPSVEMHCEWIIKYLHEYWQA-----IPKGSVNIQNVEDVHNIISNGEDFILNT 517
             +H   V  VE  CEW+  +L  + QA      P+   N + V       S+     LNT
Sbjct: 1250 LIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRPVVQYWR-PSSSVSLKLNT 1309

Query: 518  DATFLGATRAIGIGLVLRDKFGHMKAAQSSQSHVYTSPLGVEAVAVLHGLYMAKTLGVNR 577
            DA   GA+ +   G ++RD    + AA S +     SPL  E   +L GL  A       
Sbjct: 1310 DAACRGASTS--FGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFAAASNFTH 1369

Query: 578  VTILSDSLKLIKSVNVEIQS 589
            + + SDSL  I+ +  EI +
Sbjct: 1370 LEVESDSLLAIQLIRNEIHT 1384

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BLAST of Lag0000265 vs. NCBI nr
Match: TXG66206.1 (hypothetical protein EZV62_007481 [Acer yangbiense])

HSP 1 Score: 79.0 bits (193), Expect = 2.1e-10
Identity = 50/183 (27.32%), Postives = 85/183 (46.45%), Query Frame = 0


Query: 403 AVWGIISPILTVDCVDYFDIKDRWLRQSEDSSLCPERICVGAWAIWNDKNSRVHNIPVPS 462
           + +G++  +   D V + D     L      S   E +CV  W +W+ +N  +H      
Sbjct: 83  SAFGLLGDVQVADSVSFLDF--AILYNERVKSPYFELLCVLCWCVWHRRNQSIHGSLAFP 142

Query: 463 VEMHCEWIIKYLHEYWQAIP---KGSVNIQNVEDVHNIISNGEDFILNTDATFLGATRAI 522
           V    EW + +LH++ +A     KG     NV      +  G  F +NTDA    + +  
Sbjct: 143 VSKIFEWGLAFLHDFCEASRSKLKGQTG-SNVVPCWQALQLGA-FKINTDAALHSSDKVS 202

Query: 523 GIGLVLRDKFGHMKAAQSSQSHVYTSPLGVEAVAVLHGLYMAKTLGVNRVTILSDSLKLI 582
           GIG+V++D   H++A+       Y  P   EA+A+L GL++A   G     + SD+L ++
Sbjct: 203 GIGVVIQDNDAHVRASLCQNLSAYFQPQIAEALAILKGLFLALNNGFVPAVLESDALTVV 261

[Close]

BLAST of Lag0000265 vs. NCBI nr
Match: XP_030936394.1 (uncharacterized protein LOC115961575 [Quercus lobata])

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-09
Identity = 51/190 (26.84%), Postives = 85/190 (44.74%), Query Frame = 0


Query: 398 CSRALAVWGIISPILTVDCVDYFDIKD-RW--LRQSEDSSLCPERICVGAWAIWNDKNSR 457
           C RA  +W     ++          KD  W    + E S     ++   AW +W ++N  
Sbjct: 24  CKRAREMWESSKLVMQFTAEQNCSFKDLLWSLCMEVESSPELVAKMVTRAWVLWGNRNEM 83

Query: 458 VHNIPVPSVEMHCEWIIKYLHEYW-QAIPKGSVNIQNVEDVHNIISNGEDFILNTDATFL 517
                  S      W  +YL EY+   I +  V   +++ V  +   G+ +  N D    
Sbjct: 84  HKGGKRKSGLELVRWATQYLEEYYATTIVEPDVRPPSIQPVRWLPPQGQTYKANVDGAVF 143

Query: 518 GATRAIGIGLVLRDKFGHMKAAQSSQSHVYTSPLGVEAVAVLHGLYMAKTLGVNRVTILS 577
              +A+GIG+V++DK G +KAA S +  +   P+  EA AV  G+  AK +G+  V +  
Sbjct: 144 AKLKAVGIGVVIQDKEGRVKAALSKKIMLPLGPVEAEAKAVEVGVQFAKDVGIRDVMVEG 203

Query: 578 DSLKLIKSVN 584
           DSL +  ++N
Sbjct: 204 DSLIMQHALN 213

[Close]

BLAST of Lag0000265 vs. NCBI nr
Match: XP_022131661.1 (uncharacterized protein LOC111004786 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 3.4e-08
Identity = 54/207 (26.09%), Postives = 91/207 (43.96%), Query Frame = 0


Query: 398 CSRALAVWGIISPILTVDCVD-YFDIKDRWLRQSEDSSLCPERICVGA---WAIWNDKNS 457
           C RA  +W ++ P L    ++      D WL   +   L P++  + A   WAIW D+NS
Sbjct: 11  CKRAKKIWNLMFPSLFTSPINGNLSFMDIWLLLYD--KLNPQQRDLAAFTXWAIWCDRNS 70

Query: 458 RVHNIPVPSVEMHCEWIIKYLHEYWQAIPKGSVNIQNVE----DVHNIISNGEDFILNTD 517
             H   V +  + C WI  Y   Y QA     ++ Q           +        +N+D
Sbjct: 71  XAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRDSAMKVNSD 130

Query: 518 ATFLGATRAIGIGLVLRDKFGHMKAAQSSQSHVYTSPLGVEAVAVLHGLYMAKTLGVNRV 577
           A     + + G+GL++RD FG +  A+S    +  +PL  E   +L  L +A +    R+
Sbjct: 131 AAC--RSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRL 190

Query: 578 TILSDSLKLIKSVNVEIQSLSLSTLSL 597
            + SD  + I+ V  ++ S+    + L
Sbjct: 191 VVESDCQEAIRLVQGDLFSMGEELIGL 213

[Close]

BLAST of Lag0000265 vs. NCBI nr
Match: MBA0819030.1 (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-07
Identity = 62/215 (28.84%), Postives = 99/215 (46.05%), Query Frame = 0


Query: 380 PRLPPSSTNLPFVAREGQCSRALAVWGIISPILTVDCVDYFDIKDRWLRQ--SEDSSLCP 439
           PR    S ++  + RE  C   ++VW  +S +  V   D      +WL    S+ S+   
Sbjct: 3   PRCGSGSESIEHLFRE--CPVTISVWKELSFLSYVQ--DNQMGFKQWLTWVFSQCSASYR 62

Query: 440 ERICVGAWAIWNDKNSRVHNIPVPSVEMHCEWIIKYLHEYWQAIPKGSVNIQNVEDVHNI 499
              CV  WAIW D+N+R+HN    S +    ++I Y+ E   ++ K S   Q+   V   
Sbjct: 63  RIFCVVVWAIWGDRNNRLHNKGSKSAKELGRFVISYISEL-DSVAKTS--RQSSTTVKKW 122

Query: 500 ISNGEDFI-LNTDATFLGATRAIGIGLVLRDKFGHMKAAQSSQSHVYTSPLGVEAVAVLH 559
           +   + FI +N DA ++       IG+V R++ G +  + S       S  G EA+A   
Sbjct: 123 VKPTDSFIKINFDAAYVRGQNKAAIGVVARNEEGSVLLSCSEVYQWVPSAFGAEAIACRK 182

Query: 560 GLYMAKTLGVNRVTILSDSLKLIKSVNVEIQSLSL 592
            L +   +  +RV I  DSL +IK    +I + SL
Sbjct: 183 ALQIDVQMQWDRVIIEGDSLSIIKKCKTKIPNKSL 210

[Close]

BLAST of Lag0000265 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.0e-11
Identity = 60/200 (30.00%), Postives = 87/200 (43.50%), Query Frame = 0


Query: 398  CSRALAVWGIISPILTV----DCVDYFDIKDRWLRQSEDSSLCPERICVGAWAIWNDKNS 457
            C RA  +W  + P LT     D + + ++      Q E   L      +  W IWND+NS
Sbjct: 1190 CKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDL--NLAAITGWGIWNDRNS 1249

Query: 458  RVHNIPVPSVEMHCEWIIKYLHEYWQA-----IPKGSVNIQNVEDVHNIISNGEDFILNT 517
             +H   V  VE  CEW+  +L  + QA      P+   N + V       S+     LNT
Sbjct: 1250 LIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRPVVQYWR-PSSSVSLKLNT 1309

Query: 518  DATFLGATRAIGIGLVLRDKFGHMKAAQSSQSHVYTSPLGVEAVAVLHGLYMAKTLGVNR 577
            DA   GA+ +   G ++RD    + AA S +     SPL  E   +L GL  A       
Sbjct: 1310 DAACRGASTS--FGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFAAASNFTH 1369

Query: 578  VTILSDSLKLIKSVNVEIQS 589
            + + SDSL  I+ +  EI +
Sbjct: 1370 LEVESDSLLAIQLIRNEIHT 1384

[Close]

BLAST of Lag0000265 vs. ExPASy TrEMBL
Match: A0A5C7ICQ3 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_007481 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-10
Identity = 50/183 (27.32%), Postives = 85/183 (46.45%), Query Frame = 0


Query: 403 AVWGIISPILTVDCVDYFDIKDRWLRQSEDSSLCPERICVGAWAIWNDKNSRVHNIPVPS 462
           + +G++  +   D V + D     L      S   E +CV  W +W+ +N  +H      
Sbjct: 83  SAFGLLGDVQVADSVSFLDF--AILYNERVKSPYFELLCVLCWCVWHRRNQSIHGSLAFP 142

Query: 463 VEMHCEWIIKYLHEYWQAIP---KGSVNIQNVEDVHNIISNGEDFILNTDATFLGATRAI 522
           V    EW + +LH++ +A     KG     NV      +  G  F +NTDA    + +  
Sbjct: 143 VSKIFEWGLAFLHDFCEASRSKLKGQTG-SNVVPCWQALQLGA-FKINTDAALHSSDKVS 202

Query: 523 GIGLVLRDKFGHMKAAQSSQSHVYTSPLGVEAVAVLHGLYMAKTLGVNRVTILSDSLKLI 582
           GIG+V++D   H++A+       Y  P   EA+A+L GL++A   G     + SD+L ++
Sbjct: 203 GIGVVIQDNDAHVRASLCQNLSAYFQPQIAEALAILKGLFLALNNGFVPAVLESDALTVV 261

[Close]

BLAST of Lag0000265 vs. ExPASy TrEMBL
Match: A0A6J1BQ49 (uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004786 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-08
Identity = 54/207 (26.09%), Postives = 91/207 (43.96%), Query Frame = 0


Query: 398 CSRALAVWGIISPILTVDCVD-YFDIKDRWLRQSEDSSLCPERICVGA---WAIWNDKNS 457
           C RA  +W ++ P L    ++      D WL   +   L P++  + A   WAIW D+NS
Sbjct: 11  CKRAKKIWNLMFPSLFTSPINGNLSFMDIWLLLYD--KLNPQQRDLAAFTXWAIWCDRNS 70

Query: 458 RVHNIPVPSVEMHCEWIIKYLHEYWQAIPKGSVNIQNVE----DVHNIISNGEDFILNTD 517
             H   V +  + C WI  Y   Y QA     ++ Q           +        +N+D
Sbjct: 71  XAHGSSVSTPALRCNWISSYFQNYSQAQENKRISPQQSSVPPPSCRWLPPRDSAMKVNSD 130

Query: 518 ATFLGATRAIGIGLVLRDKFGHMKAAQSSQSHVYTSPLGVEAVAVLHGLYMAKTLGVNRV 577
           A     + + G+GL++RD FG +  A+S    +  +PL  E   +L  L +A +    R+
Sbjct: 131 AAC--RSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEALKLAASRSYTRL 190

Query: 578 TILSDSLKLIKSVNVEIQSLSLSTLSL 597
            + SD  + I+ V  ++ S+    + L
Sbjct: 191 VVESDCQEAIRLVQGDLFSMGEELIGL 213

[Close]

BLAST of Lag0000265 vs. ExPASy TrEMBL
Match: A0A7J9IAD6 (RNase H domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_027881 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.2e-08
Identity = 62/215 (28.84%), Postives = 99/215 (46.05%), Query Frame = 0


Query: 380 PRLPPSSTNLPFVAREGQCSRALAVWGIISPILTVDCVDYFDIKDRWLRQ--SEDSSLCP 439
           PR    S ++  + RE  C   ++VW  +S +  V   D      +WL    S+ S+   
Sbjct: 3   PRCGSGSESIEHLFRE--CPVTISVWKELSFLSYVQ--DNQMGFKQWLTWVFSQCSASYR 62

Query: 440 ERICVGAWAIWNDKNSRVHNIPVPSVEMHCEWIIKYLHEYWQAIPKGSVNIQNVEDVHNI 499
              CV  WAIW D+N+R+HN    S +    ++I Y+ E   ++ K S   Q+   V   
Sbjct: 63  RIFCVVVWAIWGDRNNRLHNKGSKSAKELGRFVISYISEL-DSVAKTS--RQSSTTVKKW 122

Query: 500 ISNGEDFI-LNTDATFLGATRAIGIGLVLRDKFGHMKAAQSSQSHVYTSPLGVEAVAVLH 559
           +   + FI +N DA ++       IG+V R++ G +  + S       S  G EA+A   
Sbjct: 123 VKPTDSFIKINFDAAYVRGQNKAAIGVVARNEEGSVLLSCSEVYQWVPSAFGAEAIACRK 182

Query: 560 GLYMAKTLGVNRVTILSDSLKLIKSVNVEIQSLSL 592
            L +   +  +RV I  DSL +IK    +I + SL
Sbjct: 183 ALQIDVQMQWDRVIIEGDSLSIIKKCKTKIPNKSL 210

[Close]

BLAST of Lag0000265 vs. ExPASy TrEMBL
Match: A0A5C7IIT4 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004125 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-07
Identity = 47/150 (31.33%), Postives = 73/150 (48.67%), Query Frame = 0


Query: 438 ERICVGAWAIWNDKNSRVHNIPVPSVEMH--CEWIIKYLHEYWQA--IPKGSVNIQNVED 497
           E +CV  W +W  +N  V+     +V      +W   ++ ++  A  +  GSV  Q V  
Sbjct: 641 EFLCVVWWRVWYRRNQLVYEKSSQTVHDFDVLDWAASFIQDFKAAKTVDTGSVVKQRVAP 700

Query: 498 VHNIISNGEDFILNTDATFLGATRAIGIGLVLRDKFGHMKAAQSSQSHVYTSPLGVEAVA 557
                 +G  + +NTDAT     +  GIG+V+RD +GH+ A+          P  VEAVA
Sbjct: 701 KWKPSPSG-SYKINTDATLDCRAKVTGIGVVIRDCYGHVMASLCQSFPGLLQPQTVEAVA 760

Query: 558 VLHGLYMAKTLGVNRVTILSDSLKLIKSVN 584
           VL G  +A   G+   +I SDSL ++  +N
Sbjct: 761 VLRGFRLALEAGLCPASIESDSLSVVNLIN 789

The following BLAST results are available for this feature:

BLAST of Lag0000265 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158377.1	4.2e-11	30.00	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
TXG66206.1	2.1e-10	27.32	hypothetical protein EZV62_007481 [Acer yangbiense]	[more]
XP_030936394.1	2.3e-09	26.84	uncharacterized protein LOC115961575 [Quercus lobata]	[more]
XP_022131661.1	3.4e-08	26.09	uncharacterized protein LOC111004786 [Momordica charantia]	[more]
MBA0819030.1	1.3e-07	28.84	hypothetical protein [Gossypium harknessii]	[more]

BLAST of Lag0000265 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0000265 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DX30	2.0e-11	30.00	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5C7ICQ3	1.0e-10	27.32	RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_007481 ...	[more]
A0A6J1BQ49	1.6e-08	26.09	uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A7J9IAD6	6.2e-08	28.84	RNase H domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_0278...	[more]
A0A5C7IIT4	1.8e-07	31.33	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004125 PE=4 SV=1	[more]

BLAST of Lag0000265 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 503..621 e-value: 1.8E-7 score: 33.3
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 507..585 e-value: 2.3E-8 score: 33.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 306..331
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 613..637
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..168
None	No IPR available	PANTHER	PTHR47074	BNAC02G40300D PROTEIN	coord: 505..621
None	No IPR available	PANTHER	PTHR47074:SF37	PROTEIN, PUTATIVE-RELATED	coord: 505..621
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 506..583 e-value: 1.97255E-12 score: 62.7168
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 504..584

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000265.1	Lag0000265.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity