Lag0000247 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000247
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionIntegrase catalytic domain-containing protein
Locationchr4: 2184930 .. 2187846 (-)
RNA-Seq ExpressionLag0000247
SyntenyLag0000247
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCAGCTTAATGAATTGGAAGAATTTGCCAATTTTCTTAATGAAAATGCGAAAATGTATAAAGAAAATACTAAGCTGTGGCATGACAAGAAAATTAAATCTAAAGAGTTTGTCAAAGGTCAGAAAGTTTTGCTTTATAATTCTATATTAAAATTGTTTCCCAGGAAACTAAAATCTAAATGGTCAGGGCCATTTATTGTGGTTGAAGTTTTCCCCATGGAGCAATTACTTTGCAGGATGAAAAAGATGGGAGAGTGTTCAAAGTGAATGGACAACGTGTGAAACATTATTGAGGAGAGAAGTTTCAGTCGAAATATCCTTCCCTAAAGCTGGTTGATGAATGAGAAGCAAGATTTTTGCGGGAGCATTTCACAGAGAAAATTTTAAGCTCCCAGTGTTTGTCTTGATTTTATTTCTCGTTGATTTAATTTGATTTTAATCTGAATTATTGTAGATTTAGGTTGTTTAAATTTCGCATAATTTATTTTAAGTTCGTTGATATTTTTAGTTCAGTAGATTTTATTTTCGAGTATTTTTTATTATTTTGCCAGTTTTTATTTATTTCAATTAGATTTAGTTAAATTTTAATTCAGTTTTTATTTTCGGTTATTTAATTTCTGTGTAGATTAGGTGTGAAAAAGATCTTTCCTGATTTATTCGGTTTGAATTATAAAATAAAAGATAAGATTTGATTTAAGCGGTTGAATTCAAATTTCCTGATTTGATTTAAATTTGAATTCCGTATCCAAGATTCTTCAGTAATCTTTTCAGAAGGTTGTTGCGGCAAATTAAGTTGGAGCAAATCTTCCATCAGAATAGAAGGGTTTGTTGAGAATTAATTATTCTTACCGTTTGATTTTGAATTTCTGTGGGCAGGTAAATTGCATGTATGCTGCCACGTGTCGCGCAAGGATAATCCAACGGTTTAGCCGTTGACAGCATGTAGTTATTTACCATGGGCGATTGAAATTCAAAGATTTTACCGTTAGGGATTTGATTTGCAAATTAAATGTGAACGGTAAATCCATTTAATACGGAGCAAAATCTTTCGGTTAAGATTCAATTTGCTTCAACTCAATTTATTCTAACCCTTCGGTAAATGCTTATCACTCCATTTTCTTGTTTCAACCTTTGTCGTGTGCATTTTCTTTCTTTGTTTCGATTTTCTGTAAGTCCCTTTGTCTCCAATGGTGAAAACGAGAGCAAGAAAAGAGAGGATAATGAGGATAAGAGGTGTCTGTCACCCCTGAGGTTCAGAAAGTAAAAGCGAAGAAGAAGAAAACACTGGAGGAAAAGAAGCGAAAAGAAGGAGAAGGAACAACGGGTTGAGGAGCAAGAAGCTGGCCAGAGGGCGACATAAGATGTTACTACTGTAGGGGAAGAAGAAAATCCGAAAGAACCTGAAGTGCAGAACCCAGAGGAGGTTGAGTCGAGAGTTGCGAATACAAAGGAAGTTCAAGAAGAGAATACGAGGAGATTCAAGAAAGGCAGGTGAAGAACAACATGCAGAGGTTGCACCTGAAGGAGGTAATGAGCCAGTGCAGGAGGCTCGAGTGGAGGTGATCGTGTCGGAAGTGCCCAGACGTCGCCGCATTAAGCGAAAAGCGGGCCACGTTCAGGTAGTCCGAACTGATACCACATCACCTCCAACTACTGATTCTGAAAGAGAAAATGCAGAGAAAGAAGAACGTGAGAAGAGGGAGGCTGAGGAAAGAGTAAGAGAAGAAACAGAGAAGAAAGCTGAGGAAGAATGGTTGCTCAAGCGAATGGAGAAAAGGGCAAAAGTGTTGCTGAAGCATCGAAGAACCTGACGAGGTAGATGAGCCACAATTACCGTATGATCGCTTGTCAACAATTCTGCTAGAGCAAAATATGCTGAGCTGCTGAAAAGAGATTTTTATTCGAGAGAGGATTTAGCGGTGATCTTCCGCATTTTCTGAGGACTGGTATTGCAGACCAGGCTGGGGATTGTTTTGTGCAAAGCCTGAGTCTGTAAACGCACAGGTGGTGCGCGAATTTTATGCTAATATTGACAAAGAAGATGGTTTCCAAGTGATTGTTCGAGGAGTCGAAGTAGCTGGAGTCCTAGTGCTATTAACGCAATGTATAACCTTCAGAATTTCCCCCACGTAGCGTATAATGAGATGGCTGTAGCGCCATGTAATGAGCAGCTGAGTGATGCTGTGCGGGAGGTGGGTATTGAAGGGGCACAGTGGCAGCTTTCAAAAACTGAGAAGAGGACGTTTCAGTCAGCTTATCTGAAGAGGGAGGCAAACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTGACTTTTGAGCCTTGAGGATTGAGTTATGATTGTTGCATCCATTCTTCCATTGTATGTTTGATTTCTAGTTTGCTTGAGGACTAGCAAAAGCATAAGTTTGGGGGTATTTGATAGCGAGCATAGCTAGCTATCTTTACTTATTTAATTTAGCTAGTCTTTTATGATTTTGGGCCATTTTATTGTGCTTTATTGTTTATTTTGTAGGAAATGGTTGATTGGAGCTTTAATGCAATATCAGAGTTATTCGGGTGCTCGGGGCATGAAAAGATGCAAAGGAATGAAAAGACTAAAAGGGAAAAAGTCAAATCTCGGTCAACAGCAGGCTAGCGTCTCGACGCTAGCTCTTGAGCGTCTCGACGCTCACATTCCATATCAGATTAGGCGCGTAAAGCTTACAGCGTCGAGACGCTATGATAGGAAGCGTCCCGACGCTACCGTTTTTCCTTATTCAGAACGCGCGTATAAGAGGCAGCGTCTCGACGCTAAGACGAAAAATCAGAATAAAAGCTTCACTTCGGCTAGGTTTTAA

mRNA sequence

ATGTTGCAGCTTAATGAATTGGAAGAATTTGCCAATTTTCTTAATGAAAATGCGAAAATGTATAAAGAAAATACTAAGCTGTGGCATGACAAGAAAATTAAATCTAAAGAGTTTGTCAAAGGTAAATTGCATGTATGCTGCCACGTGTCGCGCAAGGATAATCCAACGGGGAAGAAGAAAATCCGAAAGAACCTGAAGTGCAGAACCCAGAGGAGGTTGAGTCGAGAGTTGCGAATACAAAGGAAGTTCAAGAAGAGAATACGAGGAGATTCAAGAAAGGCAGGTGAAGAACAACATGCAGAGGTTGCACCTGAAGGAGGTAATGAGCCAGTGCAGGAGGCTCGAGTGGAGGTGATCGTGTCGGAAGTGCCCAGACGTCGCCGCATTAAGCGAAAAGCGGGCCACGTTCAGGTAGTCCGAACTGATACCACATCACCTCCAACTACTGATTCTGAAAGAGAAAATGCAGAGAAAGAAGAACGTGAGAAGAGGGAGGCTGAGGAAAGAGTAAGAGAAGAAACAGAGAAGAAAGCTGAGGAAGAATGGTTGCTCAAGCGAATGGAGAAAAGGGCAAAAGTACCAGGCTGGGGATTGTTTTGTGCAAAGCCTGAGTCTGTAAACGCACAGAATTTCCCCCACGTAGCGTATAATGAGATGGCTGTAGCGCCATGTAATGAGCAGCTGAGTGATGCTGTGCGGGAGGTGGGTATTGAAGGGGCACAGTGGCAGCTTTCAAAAACTGAGAAGAGGACGAAATGGTTGATTGGAGCTTTAATGCAATATCAGAGTTATTCGGGTGCTCGGGGCATGAAAAGATGCAAAGGAATGAAAAGACTAAAAGGGAAAAAGTCAAATCTCGGTCAACAGCAGGCTAGCGTCTCGACGCTAGCTCTTGAGCGTCTCGACGCTCACATTCCATATCAGATTAGGCGCGTAAAGCTTACAGCGTCGAGACGCTATGATAGGAAGCGTCCCGACGCTACCGTTTTTCCTTATTCAGAACGCGCGTATAAGAGGCAGCGTCTCGACGCTAAGACGAAAAATCAGAATAAAAGCTTCACTTCGGCTAGGTTTTAA

Coding sequence (CDS)

ATGTTGCAGCTTAATGAATTGGAAGAATTTGCCAATTTTCTTAATGAAAATGCGAAAATGTATAAAGAAAATACTAAGCTGTGGCATGACAAGAAAATTAAATCTAAAGAGTTTGTCAAAGGTAAATTGCATGTATGCTGCCACGTGTCGCGCAAGGATAATCCAACGGGGAAGAAGAAAATCCGAAAGAACCTGAAGTGCAGAACCCAGAGGAGGTTGAGTCGAGAGTTGCGAATACAAAGGAAGTTCAAGAAGAGAATACGAGGAGATTCAAGAAAGGCAGGTGAAGAACAACATGCAGAGGTTGCACCTGAAGGAGGTAATGAGCCAGTGCAGGAGGCTCGAGTGGAGGTGATCGTGTCGGAAGTGCCCAGACGTCGCCGCATTAAGCGAAAAGCGGGCCACGTTCAGGTAGTCCGAACTGATACCACATCACCTCCAACTACTGATTCTGAAAGAGAAAATGCAGAGAAAGAAGAACGTGAGAAGAGGGAGGCTGAGGAAAGAGTAAGAGAAGAAACAGAGAAGAAAGCTGAGGAAGAATGGTTGCTCAAGCGAATGGAGAAAAGGGCAAAAGTACCAGGCTGGGGATTGTTTTGTGCAAAGCCTGAGTCTGTAAACGCACAGAATTTCCCCCACGTAGCGTATAATGAGATGGCTGTAGCGCCATGTAATGAGCAGCTGAGTGATGCTGTGCGGGAGGTGGGTATTGAAGGGGCACAGTGGCAGCTTTCAAAAACTGAGAAGAGGACGAAATGGTTGATTGGAGCTTTAATGCAATATCAGAGTTATTCGGGTGCTCGGGGCATGAAAAGATGCAAAGGAATGAAAAGACTAAAAGGGAAAAAGTCAAATCTCGGTCAACAGCAGGCTAGCGTCTCGACGCTAGCTCTTGAGCGTCTCGACGCTCACATTCCATATCAGATTAGGCGCGTAAAGCTTACAGCGTCGAGACGCTATGATAGGAAGCGTCCCGACGCTACCGTTTTTCCTTATTCAGAACGCGCGTATAAGAGGCAGCGTCTCGACGCTAAGACGAAAAATCAGAATAAAAGCTTCACTTCGGCTAGGTTTTAA

Protein sequence

MLQLNELEEFANFLNENAKMYKENTKLWHDKKIKSKEFVKGKLHVCCHVSRKDNPTGKKKIRKNLKCRTQRRLSRELRIQRKFKKRIRGDSRKAGEEQHAEVAPEGGNEPVQEARVEVIVSEVPRRRRIKRKAGHVQVVRTDTTSPPTTDSERENAEKEEREKREAEERVREETEKKAEEEWLLKRMEKRAKVPGWGLFCAKPESVNAQNFPHVAYNEMAVAPCNEQLSDAVREVGIEGAQWQLSKTEKRTKWLIGALMQYQSYSGARGMKRCKGMKRLKGKKSNLGQQQASVSTLALERLDAHIPYQIRRVKLTASRRYDRKRPDATVFPYSERAYKRQRLDAKTKNQNKSFTSARF
Homology
[Close]
BLAST of Lag0000247 vs. NCBI nr
Match: XP_027186086.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC113784129 [Cicer arietinum])

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-06
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 0 

Query: 1   MLQLNELEEFANFLNENAKMYKENTKLWHDKKIKSKEFVKGKL 44
           +LQLNELEEF NF  ENAK+YKE TK WHDKKIK KEF +G+L
Sbjct: 806 ILQLNELEEFRNFAYENAKIYKEKTKKWHDKKIKFKEFQEGEL 848

[Close]
BLAST of Lag0000247 vs. NCBI nr
Match: XP_015960717.1 (uncharacterized protein LOC107484686 [Arachis duranensis])

HSP 1 Score: 62.4 bits (150), Expect = 9.2e-06
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 0 

Query: 3   QLNELEEFANFLNENAKMYKENTKLWHDKKIKSKEFVKGKLHVCCHVSRKDNPTGKKKIR 62
           QLNELEEF N  NENAK+YKENTK WHD+KI  +EF +G+  V  + SR    TGK K R
Sbjct: 56  QLNELEEFRNQANENAKIYKENTKRWHDQKISRREFTEGQ-KVLLYNSRLRFFTGKLKFR 114

[Close]
BLAST of Lag0000247 vs. NCBI nr
Match: XP_027193495.1 (uncharacterized protein LOC113788175 [Cicer arietinum])

HSP 1 Score: 62.4 bits (150), Expect = 9.2e-06
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 1   MLQLNELEEFANFLNENAKMYKENTKLWHDKKIKSKEFVKGKLHVCCHVSRKDNPTGKKK 60
           +LQL+ELEEF NF  ENAK+YKE TK WHDKKIK KEF +G+L V    SR     GK K
Sbjct: 394 ILQLHELEEFRNFAYENAKIYKEKTKKWHDKKIKFKEFQEGEL-VLLFNSRLKLFPGKLK 453

Query: 61  IR 63
            R
Sbjct: 454 SR 454

[Close]
BLAST of Lag0000247 vs. NCBI nr
Match: XP_015960405.1 (uncharacterized protein LOC107484307 [Arachis duranensis])

HSP 1 Score: 59.7 bits (143), Expect = 6.0e-05
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 1   MLQLNELEEFANFLNENAKMYKENTKLWHDKKIKSKEFVKGKLHVCCHVSRKDNPTGKKK 60
           ++Q NELEEF N   ENAK+YKENTK+WHD+KI  +EF++G+  V  + SR +   GK K
Sbjct: 60  LMQFNELEEFRNQAYENAKIYKENTKMWHDQKIARREFIEGQ-KVLLYNSRLNFFPGKLK 119

Query: 61  IR 63
            R
Sbjct: 120 SR 120

[Close]
BLAST of Lag0000247 vs. NCBI nr
Match: XP_015940424.1 (uncharacterized protein K02A2.6-like [Arachis duranensis])

HSP 1 Score: 59.3 bits (142), Expect = 7.8e-05
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 1   MLQLNELEEFANFLNENAKMYKENTKLWHDKKIKSKEFVKGKLHVCCHVSRKDNPTGKKK 60
           +LQLNELEEF N   ENAK+YKENTK WHD+K+  +EFV+G+  V  + SR     GK K
Sbjct: 288 LLQLNELEEFRNQAYENAKIYKENTKKWHDQKLARREFVEGQ-KVLLYNSRLKFFPGKLK 347

Query: 61  IR 63
            R
Sbjct: 348 SR 348

[Close]
BLAST of Lag0000247 vs. ExPASy TrEMBL
Match: A0A3Q7XQS1 (LOW QUALITY PROTEIN: uncharacterized protein LOC113784129 OS=Cicer arietinum OX=3827 GN=LOC113784129 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.9e-07
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 0 

Query: 1   MLQLNELEEFANFLNENAKMYKENTKLWHDKKIKSKEFVKGKL 44
           +LQLNELEEF NF  ENAK+YKE TK WHDKKIK KEF +G+L
Sbjct: 806 ILQLNELEEFRNFAYENAKIYKEKTKKWHDKKIKFKEFQEGEL 848

[Close]
BLAST of Lag0000247 vs. ExPASy TrEMBL
Match: A0A3Q7YH74 (uncharacterized protein LOC113788175 OS=Cicer arietinum OX=3827 GN=LOC113788175 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.5e-06
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 1   MLQLNELEEFANFLNENAKMYKENTKLWHDKKIKSKEFVKGKLHVCCHVSRKDNPTGKKK 60
           +LQL+ELEEF NF  ENAK+YKE TK WHDKKIK KEF +G+L V    SR     GK K
Sbjct: 394 ILQLHELEEFRNFAYENAKIYKEKTKKWHDKKIKFKEFQEGEL-VLLFNSRLKLFPGKLK 453

Query: 61  IR 63
            R
Sbjct: 454 SR 454

[Close]
BLAST of Lag0000247 vs. ExPASy TrEMBL
Match: A0A6P4D7T4 (uncharacterized protein LOC107484686 OS=Arachis duranensis OX=130453 GN=LOC107484686 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.5e-06
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 0 

Query: 3   QLNELEEFANFLNENAKMYKENTKLWHDKKIKSKEFVKGKLHVCCHVSRKDNPTGKKKIR 62
           QLNELEEF N  NENAK+YKENTK WHD+KI  +EF +G+  V  + SR    TGK K R
Sbjct: 56  QLNELEEFRNQANENAKIYKENTKRWHDQKISRREFTEGQ-KVLLYNSRLRFFTGKLKFR 114

[Close]
BLAST of Lag0000247 vs. ExPASy TrEMBL
Match: A0A6P4D1C3 (uncharacterized protein LOC107484307 OS=Arachis duranensis OX=130453 GN=LOC107484307 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-05
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 1   MLQLNELEEFANFLNENAKMYKENTKLWHDKKIKSKEFVKGKLHVCCHVSRKDNPTGKKK 60
           ++Q NELEEF N   ENAK+YKENTK+WHD+KI  +EF++G+  V  + SR +   GK K
Sbjct: 60  LMQFNELEEFRNQAYENAKIYKENTKMWHDQKIARREFIEGQ-KVLLYNSRLNFFPGKLK 119

Query: 61  IR 63
            R
Sbjct: 120 SR 120

[Close]
BLAST of Lag0000247 vs. ExPASy TrEMBL
Match: A0A6P4BIF0 (uncharacterized protein K02A2.6-like OS=Arachis duranensis OX=130453 GN=LOC107465953 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-05
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 1   MLQLNELEEFANFLNENAKMYKENTKLWHDKKIKSKEFVKGKLHVCCHVSRKDNPTGKKK 60
           +LQLNELEEF N   ENAK+YKENTK WHD+K+  +EFV+G+  V  + SR     GK K
Sbjct: 288 LLQLNELEEFRNQAYENAKIYKENTKKWHDQKLARREFVEGQ-KVLLYNSRLKFFPGKLK 347

Query: 61  IR 63
            R
Sbjct: 348 SR 348

The following BLAST results are available for this feature:
BLAST of Lag0000247 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_027186086.11.4e-0674.42LOW QUALITY PROTEIN: uncharacterized protein LOC113784129 [Cicer arietinum][more]
XP_015960717.19.2e-0660.00uncharacterized protein LOC107484686 [Arachis duranensis][more]
XP_027193495.19.2e-0661.29uncharacterized protein LOC113788175 [Cicer arietinum][more]
XP_015960405.16.0e-0553.23uncharacterized protein LOC107484307 [Arachis duranensis][more]
XP_015940424.17.8e-0556.45uncharacterized protein K02A2.6-like [Arachis duranensis][more]
BLAST of Lag0000247 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0000247 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A3Q7XQS16.9e-0774.42LOW QUALITY PROTEIN: uncharacterized protein LOC113784129 OS=Cicer arietinum OX=... [more]
A0A3Q7YH744.5e-0661.29uncharacterized protein LOC113788175 OS=Cicer arietinum OX=3827 GN=LOC113788175 ... [more]
A0A6P4D7T44.5e-0660.00uncharacterized protein LOC107484686 OS=Arachis duranensis OX=130453 GN=LOC10748... [more]
A0A6P4D1C32.9e-0553.23uncharacterized protein LOC107484307 OS=Arachis duranensis OX=130453 GN=LOC10748... [more]
A0A6P4BIF03.8e-0556.45uncharacterized protein K02A2.6-like OS=Arachis duranensis OX=130453 GN=LOC10746... [more]
BLAST of Lag0000247 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 4..24
NoneNo IPR availableCOILSCoilCoilcoord: 149..190
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..174
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..174

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000247.1Lag0000247.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding