Lag0000245 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000245
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase
Locationchr4: 2141916 .. 2147654 (+)
RNA-Seq ExpressionLag0000245
SyntenyLag0000245
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACGAATGCCCTATGCAATACGGATTGTCAGTAAGTATCAATCTAATCCAAGATTTAACCATTGGAAAACCGTTAAGAATATCCTCTAGTATTCGAGGAAACGAGGAACTATATGCTCGTGCATGAGACTAAGGATTTGATCCTTACAGGATACACTGACACAGATTTTAAGACTGATAAGGATTTGAGGAAATCTACATCAGTATCTGTGGTCACTCTTTACGATGGAGCTATAGTATGGTATAGTTACAGTCTTGACCATATAGGTCGAAAAATTAGCTGCTTGTGAAACAGCGATAGAGACTGTATGGCTTAGAAAGTTCTTGATTGATTTGGAATGTGTTCCAAATGTGAACTTGCCCATCACACTTTATAGTGATATAGTGGTGTTGTGGCAAATTCAAAAGAACATTGCAGCCTAAGACAAGCAGACACATTAAATTGAATGAAATATTGTTGATTCATTTACAAAGACTCTCTCGGCTAAAGTGTTTGAGGGTCATCTAGAAGGTCTAGATCTACGAGATATGTACAAAGGTGTAATCTAGGGCAAGTGGGAGAAATGTAATGGGTATAGTGATAACATTATGTAATGGGTATAGTGATGCCCTAGTTTATTGTATTTGTACATTGTATATGTTTTATACATGTATTTATACACCCACTGCTATATAGATTATTGTACATCCCACTAAACTAGAGTTTTAGTTCAAGTGGGAGTTTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTAAATGTAAACAAATTGTATAATTGTTTCAATAAAGTATTATTGAGTTTCTACAATAAAGTGTTATTGTTAAATATTGCACAATTTGACCCAAATCCAATAAACTAAGATCCAAGGTTGTTTGTATGTAACTTGAACTAGTATGTGGGGACATACGAGGATCGATGTTCAAGAAACAACCTAAAAGGTCTATAGTACAAGGATAAGGTTGGGTACCTTATCCTGGTAACACTATGAGATACGGCCCGCTTTGTATTTGATACAGACGTATTGATCCAAAACGTCGATGTAGTAGACATGCAAGTGGGGGTATCCTATGCAATGAGTTTGCATCAGACCAGACCACGAAATAGTCAACCATTAGTTATAACATCGTTAACTAATTAGGTTACTGTTTCAATAGGATGACCTAGGTAACTCAGTCTTAATCCTGAGTGTATCATGAACTCCTTCTCATGAGGGATTGTCCTTTGATTAGCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTTCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGGCAACACAAGAAGGAATTCACTCGTTCCCGCTTCTAGGTGAAGTAGATGAGTGTTCCCTTAAGTGGTGACTCCGGGACTTGAACAAAGGGATCCCGCCCTCTCACTGGCCCGAGAGAGACTTTCTGTTTAATGGTTGGACCATAAACAGGTTGTTCATTAGAGGAGCGCTGGTACTTAAGGAGACAGATGTAACACAGGGGTAAAACGGTAATTTGACGCCCTAGGATTTTTAAACTAATCCTAGCGACATTACTATCTCTCAACCCAAACTAACCGATTGCACCGAAAATTTCAGCAGCATAACGGCATACATAAGACTAACCCAAAATTTTTCTTTTAACCTACTAAACATAAAACACACTTCTAAATAACATTCAACCCACAACTACACTCCACAACTCCACTTTTTCACAACAGAAACCCATCCTCCACAATAAAGCGAGTCAGACCTCGCATTCACAACTAACTTCAGAAATATAAACTTACTAGGTAAAAGCATGCAACTCAATTATTAGCACGACGTAGCTTTATCAAAATAAGGCATCGAACTTCAAGTAAAACTTCTCAAAAGCTAAACCTATCCTCTCAAAACAAAACAACTAAACGAGCCTCTGAAAGAAGAAACATAACACTATCCCTTACAACCAGAAGAATAAAATTACTTTAATAACCAAAATAGAAAAACTAATTTCTAGATAACAAAAATGCCTAGGCCAGTGGAGTCACTCCTCGTGTGTCTCCTCGTCAGCACCACCGGGCTCATAATATCCGCCAACACCTGCATCATCTAAAATGTTGGGGGGAAGAAAGGGGAGGGGGTCAGTACAACCATGGTACTGGTAAGCGGCTCACACCCGATGAGCCATCAAGCATCAAACAACAAAATCAACATGCTAGGCACACGCATCCAACATACTCTTAAGCAATAAACACATAATCATGCTCCACAAAACGATAACTCATCAACAAAACTCATGTTAACTCAAAAGAATGGCTCATGTAAACACACGACATGCTATGCAACCCACATGGATTCCGCGCCATGCTCGCTTTCTTAGCACATCATTTATGCGTCATGCCACACACCAATGCACATGAATTCCGCGCCATGCAACGCAACTTAACACGTGATTTCCACGTCACGCTCCGCACCAAAACATGATCTCCGCGTCATGTAACGCACTCACACCAGCACATGAATTACGCGCCATGCGCAGCGCACACTCGCACGTGATTTACGCGTCACGCTCCGCACTCACAACCCACACGTGATTTACACGTCACGCTCCGCACCAATAACATGATTTCCGCGTCATGTAGCGCAATCTTAACACGTGATTTCCGCGTCACGTAACGCACACACATCCCAACTCACCTCTCTATGAGCATACAAGACTATGCAACTTTGACTCTTATGCAACGTAGCCAGAATCAATGAACATGCTTAACAAGAATCAACGGATCATCATGCTTTTCAAACAAACAAAACAACATGCTTGTCACATATCACAAGTTATATATCGATCAACCAATCATATTAGAAAGCGATAAACAACCAACTTGCTCATGCAGTCAAACAGACTCAACGAGTAGAAACTACTTACTGAAAAGTTTACGAGCGCTCCTAAGAACTCCTTGAACCGCTCAAGAGATTCAGACAAGCTCCTAAACAACAAGGATAATTCTAAAAATAAGAAACAACCTACTGAAAGCTTAAGACATGCTAGAAAAGCCTAAATCGACTGAGGAAAGTCTATTTCCTTACCGTATAACCACTAAAAATTCCTCAAGCTAAGAACCCAAAGCCTTCAGACCATGGACAACCATGTCTAAGGCACAACAAGCAATGGGTATTTATCGAAGGGCCATATTTAAGGTTTTTCAGCAATGTCACTCCTCGCCGTATGGAGGTCTTTTCAGCGATCAGAGGACAACTATGAGGATTTTGCAATGTGGATTCTTCTGACCTTCGTTATTTAAGGATGCCCATTGGTTCTACAAACAATGTGAATTAGAATTGTTCGATTTATGGGGTATTGATTTTATGGGGCCATTTCCCCCTTCTAATGGTAATGTTTTTATCTTATTGGCAGTTGATTACGTGTCCAAGTGGGTCGAAGCCATTGCATGCCATCAGAATGATGCTAAGACGGTATCATGGTTTCTCTAATCACACATTTTTGCGCGGTTTGGGACACCTAGAGCTTTAGTGAGCGATGAGGGTACACACTTTGTGAATAATGTTTTAACTAAGCTTTTAGCTAAGTATGGAATTAAGCATAGGATAACTGCCTCTTATCTACCGCAAGCAAACGGTCAAGCTGAAGTTAGTAATAGGGAAATTAAATCTATTTTGGAGAAAGTAGTCCATCCATCTAGGAAAGATTGGTCTTTTCGGTTAGATGAGGCTCTTTGGGCTTATAGGACAACCTATAATACTCCTCTAGGTATGTCTCCCTATAGGTTAGTATATGGAAAAGCTAGCCATTTACCGTCAGAGCTTGAGCATAAAACGTTTTGGGCTTTAAAGAAATTGAATTTTGATCTGAGTCGTACAGATGCAATAAGAATGCTGCAACTTAATGAATTAGAAGAGTTTCGCCAGTTTTCTTATGAAAATGCGAAAATGTATAAAGAGAAGACTGAGTGGTGGCATGATAAAAAATAAAGCCTAAAGAATTTGTTAAGGGTCAGAGAGTCTTGCTTTACAATTCTAGATTAAAATTGTTTCCTGGAAAATTAAAATCCAAATGGTCTGGACCATTTGTTGTGATTGAAGTTTTTCCTCATGGAACAATTACTTTGAGAGATGAAAAGATGGGCGAGTGTTAAAGGTTAATGGACAGCGAGTGAAGCATTATTCGGGAGAGGAATTTCGTTCAAATATCCTTCCCTAAAATTGGTTGATGAATAAGCGAGCTAGAGTTTTGCGGGACATTTCATATAACAATAATTTTGGCTCCCAGGATTTGTTGCGATTTTATTTTTCGCTGATTTTATTTATTTTAATTCGAATTATTTTGAATTAGATTTGGTTTATTTAGATCTCATCTGATTAATTTTAATTCGTTGGTATTTCTTTAATTTTCGTAGATTTTATTTTGGTTTATTTATCTTTAATTTCACCTATTTAATTTATTTAATCTGATTAGTTTAGATTAGATTTGATTTTAGTTTGTATTTTCGTTATTTAAATTTTTGTTTAGATTAGGTTTTAATAATGTATTTCTTAATTTATTCGGCTAAAGATAAAAAGAAGAGATTTGATTTTGGCAGTTTAAATTTGAATTGGAGTTTTCCGTATCAAAGATTCTTCTAGAAGAAAATCTTTTGCGGAACAGTTTGTTTTTGCAATTGTTAGAAGAATCAAATATTTCGTCTGATTCTAAGGGATTGGTTGTGAATTAAATAATTTTACCGTTTGAAATTTAATTTTTCCGTGGGCAGGTAAACTGCGTGAAGCATCTGGCGCTTCCACATGTCACGCAGTGTTGATCCAATGATCTATCCGTTAGCCAGCGCAAGGAAGATTTACGACGGGGAAAATTTTACCGTTTTGAAATTTAATTTCCATGATTACATGCAAATTAAAACAGTAATTTTTATTTAATTGGGGCAGAATCTTTCAATTAGGATTTAAAGTGTTGGAGCCCTATTTATTCAAACCCGTGGTACGTTTCTTTTCACTTCATCTTCTTGCCTTCATTCTTTGCCGGTTTTCTTGTCTCCCTTGCTTCTGATTACTGTGAAATTTTCCAAACCTGAAATGGCTAAAACAATTGGAGGAAAGAGAGAGCTACTGAGGAAGAGGAAGTTCCCATTACGCCTGAGGCACCAAAAACAAAAGCAAAGAAAAGGAAGACGCTGGAAGAAAGAGAGGCTAAGAGACGAAGAAGACAACATAGAGCTGAGGTTACGGAAGTAGTGAGAAAGGTGATTGAGGACATTGCTGATGAAGCGGTTGAAGAAGAACAACCAAAGCAACCTGAGGAAAAGAAAGATGCTGAACAGAGTGAATCGACAGTTGAAAATCTGCAAGAAGTGCAAGAGAAGCAAGCGGAAGAAGTGCTAGAGCACGGAAACGGTCAGGGAACCCAAAAGCAGCAGATTCATACTGAAGAAATTGTGCTGGAGATTCCACGTCGTTGCCGCCGAAAGGAGAAGGCAGGACGAATCAAGGTGATTAGGACAGACACTCCATCGCCGTTGAAAACAGAATCTGAAAAAGAAAATGCTGAGAAAGAAGAGCAAGGGAAAAAGAAGAAACATAAAAGAAAGCAGAAGAGGAAGCTTTGGCGAAGCATCAAGAAGACAGGGGCAAGGGAGTTGCCGAAGCAACGGATGAAGCAGAAGAAGAATCAGGAATGTCGTTTATTCGCTTCGTCTATGAACTTGCCAAAGCAAAATACAGAGAGATGTTGA

mRNA sequence

ATGAGACGAATGCCCTATGCAATACGGATTGTCAGATACACTGACACAGATTTTAAGACTGATAAGGATTTGAGGAAATCTACATCAGTATCTGTGGTCACTCTTTACGATGGAGCTATAGTATGCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTTCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGGCAACACAAGAAGGAATTCACTCGTTCCCGCTTCTAGGTTGTTCATTAGAGGAGCGCTGGCCAGTGGAGTCACTCCTCGTGTGTCTCCTCGTCAGCACCACCGGGCTCATAATATCCGCCAACACCTGCATCATCTAAAATGTTGGGGGGAAGAAAGGGGAGGGGGTCAGTACAACCATGGTACTGTTGATTACGTGTCCAAGTGGGTCGAAGCCATTGCATGCCATCAGAATGATGCTAAGACGGTATCATGGATAACTGCCTCTTATCTACCGCAAGCAAACGGTCAAGCTGAAGTTAGTAATAGGGAAATTAAATCTATTTTGGAGAAAGTAGTCCATCCATCTAGGAAAGATTGGTCTTTTCGGTTAGATGAGGCTCTTTGGGCTTATAGGACAACCTATAATACTCCTCTAGGTATGTCTCCCTATAGGTTAGTATATGGAAAAGCTAGCCATTTACCGTCAGAGCTTGAGCATAAAACGTTTTGGGCTTTAAAGAAATTGAATTTTGATCTGAGTCGTACAGATGCAATAAGAATGCTGCAACTTAATGAATTAGAAGAGTTTCGCCAGTTTTCTTATGAAAATGCGAAAATGAAAGAGAGAGCTACTGAGGAAGAGGAAGTTCCCATTACGCCTGAGGCACCAAAAACAAAAGCAAAGAAAAGGAAGACGCTGGAAGAAAGAGAGGCTAAGAGACGAAGAAGACAACATAGAGCTGAGGTTACGGAAGTAGTGAGAAAGGTGATTGAGGACATTGCTGATGAAGCGGTTGAAGAAGAACAACCAAAGCAACCTGAGGAAAAGAAAGATGCTGAACAGAGTGAATCGACAGTTGAAAATCTGCAAGAAGTGCAAGAGAAGCAAGCGGAAGAAGTGCTAGAGCACGGAAACGGTCAGGGAACCCAAAAGCAGCAGATTCATACTGAAGAAATTGTGCTGGAGATTCCACGTCGTTGCCGCCGAAAGGAGAAGGCAGGACGAATCAAGGTGATTAGGACAGACACTCCATCGCCGTTGAAAACAGAATCTGAAAAAGAAAATGCTGAGAAAGAAGAGCAAGGGAAAAAGAAGAAACATAAAAGAAAGCAGAAGAGGAAGCTTTGGCGAAGCATCAAGAAGACAGGGGCAAGGGAGTTGCCGAAGCAACGGATGAAGCAGAAGAAGAATCAGGAATGTCGTTTATTCGCTTCGTCTATGAACTTGCCAAAGCAAAATACAGAGAGATGTTGA

Coding sequence (CDS)

ATGAGACGAATGCCCTATGCAATACGGATTGTCAGATACACTGACACAGATTTTAAGACTGATAAGGATTTGAGGAAATCTACATCAGTATCTGTGGTCACTCTTTACGATGGAGCTATAGTATGCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTTCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGGCAACACAAGAAGGAATTCACTCGTTCCCGCTTCTAGGTTGTTCATTAGAGGAGCGCTGGCCAGTGGAGTCACTCCTCGTGTGTCTCCTCGTCAGCACCACCGGGCTCATAATATCCGCCAACACCTGCATCATCTAAAATGTTGGGGGGAAGAAAGGGGAGGGGGTCAGTACAACCATGGTACTGTTGATTACGTGTCCAAGTGGGTCGAAGCCATTGCATGCCATCAGAATGATGCTAAGACGGTATCATGGATAACTGCCTCTTATCTACCGCAAGCAAACGGTCAAGCTGAAGTTAGTAATAGGGAAATTAAATCTATTTTGGAGAAAGTAGTCCATCCATCTAGGAAAGATTGGTCTTTTCGGTTAGATGAGGCTCTTTGGGCTTATAGGACAACCTATAATACTCCTCTAGGTATGTCTCCCTATAGGTTAGTATATGGAAAAGCTAGCCATTTACCGTCAGAGCTTGAGCATAAAACGTTTTGGGCTTTAAAGAAATTGAATTTTGATCTGAGTCGTACAGATGCAATAAGAATGCTGCAACTTAATGAATTAGAAGAGTTTCGCCAGTTTTCTTATGAAAATGCGAAAATGAAAGAGAGAGCTACTGAGGAAGAGGAAGTTCCCATTACGCCTGAGGCACCAAAAACAAAAGCAAAGAAAAGGAAGACGCTGGAAGAAAGAGAGGCTAAGAGACGAAGAAGACAACATAGAGCTGAGGTTACGGAAGTAGTGAGAAAGGTGATTGAGGACATTGCTGATGAAGCGGTTGAAGAAGAACAACCAAAGCAACCTGAGGAAAAGAAAGATGCTGAACAGAGTGAATCGACAGTTGAAAATCTGCAAGAAGTGCAAGAGAAGCAAGCGGAAGAAGTGCTAGAGCACGGAAACGGTCAGGGAACCCAAAAGCAGCAGATTCATACTGAAGAAATTGTGCTGGAGATTCCACGTCGTTGCCGCCGAAAGGAGAAGGCAGGACGAATCAAGGTGATTAGGACAGACACTCCATCGCCGTTGAAAACAGAATCTGAAAAAGAAAATGCTGAGAAAGAAGAGCAAGGGAAAAAGAAGAAACATAAAAGAAAGCAGAAGAGGAAGCTTTGGCGAAGCATCAAGAAGACAGGGGCAAGGGAGTTGCCGAAGCAACGGATGAAGCAGAAGAAGAATCAGGAATGTCGTTTATTCGCTTCGTCTATGAACTTGCCAAAGCAAAATACAGAGAGATGTTGA

Protein sequence

MRRMPYAIRIVRYTDTDFKTDKDLRKSTSVSVVTLYDGAIVCMGESGQYADSICLSFWGQDRVGGWGHGNTRRNSLVPASRLFIRGALASGVTPRVSPRQHHRAHNIRQHLHHLKCWGEERGGGQYNHGTVDYVSKWVEAIACHQNDAKTVSWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSFRLDEALWAYRTTYNTPLGMSPYRLVYGKASHLPSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMKERATEEEEVPITPEAPKTKAKKRKTLEEREAKRRRRQHRAEVTEVVRKVIEDIADEAVEEEQPKQPEEKKDAEQSESTVENLQEVQEKQAEEVLEHGNGQGTQKQQIHTEEIVLEIPRRCRRKEKAGRIKVIRTDTPSPLKTESEKENAEKEEQGKKKKHKRKQKRKLWRSIKKTGARELPKQRMKQKKNQECRLFASSMNLPKQNTERC
Homology
[Close]
BLAST of Lag0000245 vs. NCBI nr
Match: KAE8661092.1 (DNA-directed RNA polymerase V subunit 5C-like [Hibiscus syriacus])

HSP 1 Score: 189.9 bits (481), Expect = 5.1e-44
Identity = 96/163 (58.90%), Postives = 119/163 (73.01%), Query Frame = 0 

Query: 123  GGQYNHGTVDYVSKWVEAIACHQNDAKTV----------SWITASYLPQANGQAEVSNRE 182
            G  Y    VDYVSKWVEAIA  +ND+KTV            I  +Y PQ NGQAE+SNRE
Sbjct: 1797 GKLYILPVVDYVSKWVEAIATSKNDSKTVLKFSHKYGVRHKIATAYHPQTNGQAEISNRE 1856

Query: 183  IKSILEKVVHPSRKDWSFRLDEALWAYRTTYNTPLGMSPYRLVYGKASHLPSELEHKTFW 242
            IK ILEKVV+P RKDWS +LDEALWAYRT++ TPLGMSP++LVYGKA HLP ELEHK +W
Sbjct: 1857 IKQILEKVVNPKRKDWSPKLDEALWAYRTSFKTPLGMSPFKLVYGKACHLPVELEHKAYW 1916

Query: 243  ALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMKERATEE 276
            A+K+LNFD       R+L+LNE++EFR  +YE A++ +  T++
Sbjct: 1917 AIKRLNFDGQLAGEQRLLELNEMKEFRAQAYEKARIYKEKTKK 1959

[Close]
BLAST of Lag0000245 vs. NCBI nr
Match: XP_023521407.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111785222 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.1 bits (479), Expect = 8.7e-44
Identity = 102/193 (52.85%), Postives = 116/193 (60.10%), Query Frame = 0 

Query: 123 GGQYNHGTVDYVSKWVEAIACHQNDAKTV------------------------------- 182
           G  Y    VDYVSKWVEAIAC  ND KTV                               
Sbjct: 257 GNLYILVAVDYVSKWVEAIACPSNDGKTVLKFLKRNIFTRFGVPRALISDEGTHFVNRLM 316

Query: 183 ----------SWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSFRLDEALWAYRT 242
                       +   Y PQ NGQAEV N EIKSILEKVV P+RKDWS +LD+A+WAYRT
Sbjct: 317 NSLLERYNVKHRVATPYHPQTNGQAEVYNIEIKSILEKVVQPNRKDWSVKLDDAIWAYRT 376

Query: 243 TYNTPLGMSPYRLVYGKASHLPSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQF 275
            + TPLGMSPY+LV+GKA HLP ELEHK FWALKKLNFD +    +R +QLNELEEFR  
Sbjct: 377 AFKTPLGMSPYKLVFGKACHLPLELEHKAFWALKKLNFDYTTDGDLRRMQLNELEEFRYL 436

[Close]
BLAST of Lag0000245 vs. NCBI nr
Match: PIN11732.1 (DNA-directed DNA polymerase [Handroanthus impetiginosus])

HSP 1 Score: 186.8 bits (473), Expect = 4.3e-43
Identity = 93/152 (61.18%), Postives = 110/152 (72.37%), Query Frame = 0 

Query: 123  GGQYNHGTVDYVSKWVEAIACHQNDAKTVSWITASYLPQANGQAEVSNREIKSILEKVVH 182
            G  Y     DYVSKWVE +A   ND+K V  I+  Y PQ +GQ EVSNREIK ILEK V 
Sbjct: 1041 GNMYILVAGDYVSKWVETVAVPNNDSKVV--ISTPYHPQTSGQVEVSNREIKRILEKTVS 1100

Query: 183  PSRKDWSFRLDEALWAYRTTYNTPLGMSPYRLVYGKASHLPSELEHKTFWALKKLNFDLS 242
             +RKDWS RLDEALWAYRT + TP+GMSPY LV+GKA HLP ELEH  +WA++KLNFD+ 
Sbjct: 1101 STRKDWSKRLDEALWAYRTAFKTPIGMSPYHLVFGKACHLPVELEHNAYWAIRKLNFDMQ 1160

Query: 243  RTDAIRMLQLNELEEFRQFSYENAKMKERATE 275
                 R+LQLNEL+EFR  SYENAK+ +  T+
Sbjct: 1161 AAGEKRLLQLNELDEFRLQSYENAKIYKEKTK 1190

[Close]
BLAST of Lag0000245 vs. NCBI nr
Match: XP_028785069.1 (uncharacterized protein LOC114740981 [Prosopis alba])

HSP 1 Score: 186.4 bits (472), Expect = 5.7e-43
Identity = 102/195 (52.31%), Postives = 122/195 (62.56%), Query Frame = 0 

Query: 131  VDYVSKWVEAIACHQNDAKTV--------------------------------------- 190
            VDYVSKWVEA AC  +DAKTV                                       
Sbjct: 1354 VDYVSKWVEATACVSSDAKTVIKFLKKNIFTRFGAPRAIISDGGSHFCNHQFQALMKKYG 1413

Query: 191  --SWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSFRLDEALWAYRTTYNTPLGM 250
                +T +Y PQ+NGQAE+SNREIKSILEKVV  +RKDWS +LD+ALWAYRT Y TP+GM
Sbjct: 1414 VKHRVTLAYHPQSNGQAEISNREIKSILEKVVGATRKDWSLKLDDALWAYRTAYKTPIGM 1473

Query: 251  SPYRLVYGKASHLPSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKM- 284
            SPYRLV+GKA HLP ELEH  +WA+KKLNFD     A R+LQLNELEEFR  +YE+A++ 
Sbjct: 1474 SPYRLVFGKACHLPVELEHGAYWAIKKLNFDFQAVGAKRLLQLNELEEFRLNAYESARLY 1533

[Close]
BLAST of Lag0000245 vs. NCBI nr
Match: RVW59036.1 (hypothetical protein CK203_106734 [Vitis vinifera])

HSP 1 Score: 186.0 bits (471), Expect = 7.4e-43
Identity = 91/145 (62.76%), Postives = 112/145 (77.24%), Query Frame = 0 

Query: 131 VDYVSKWVEAIACHQNDAKTVSWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSF 190
           VDYVSKWVEA A   NDAK    IT  Y PQANGQAE+SNREIK+ILEK V+ +RKDW+ 
Sbjct: 173 VDYVSKWVEATATTTNDAK--HKITLVYHPQANGQAEISNREIKNILEKTVNTNRKDWAK 232

Query: 191 RLDEALWAYRTTYNTPLGMSPYRLVYGKASHLPSELEHKTFWALKKLNFDLSRTDAIRML 250
           +LD+ALWAY T + TP+GMSPYRLV+GKA HLP ELEH+ +W +KK NFDL      R+L
Sbjct: 233 KLDDALWAYCTCFKTPIGMSPYRLVFGKACHLPVELEHRAYWVVKKFNFDLKAVGEKRLL 292

Query: 251 QLNELEEFRQFSYENAKMKERATEE 276
           QLNE++EFR  +YENAK+ +  T++
Sbjct: 293 QLNEIDEFRNDAYENAKIYKEQTKK 315

[Close]
BLAST of Lag0000245 vs. ExPASy TrEMBL
Match: A0A6A2WLX1 (Reverse transcriptase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116939pilonHSYRG00212 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.5e-44
Identity = 96/163 (58.90%), Postives = 119/163 (73.01%), Query Frame = 0 

Query: 123  GGQYNHGTVDYVSKWVEAIACHQNDAKTV----------SWITASYLPQANGQAEVSNRE 182
            G  Y    VDYVSKWVEAIA  +ND+KTV            I  +Y PQ NGQAE+SNRE
Sbjct: 1797 GKLYILPVVDYVSKWVEAIATSKNDSKTVLKFSHKYGVRHKIATAYHPQTNGQAEISNRE 1856

Query: 183  IKSILEKVVHPSRKDWSFRLDEALWAYRTTYNTPLGMSPYRLVYGKASHLPSELEHKTFW 242
            IK ILEKVV+P RKDWS +LDEALWAYRT++ TPLGMSP++LVYGKA HLP ELEHK +W
Sbjct: 1857 IKQILEKVVNPKRKDWSPKLDEALWAYRTSFKTPLGMSPFKLVYGKACHLPVELEHKAYW 1916

Query: 243  ALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMKERATEE 276
            A+K+LNFD       R+L+LNE++EFR  +YE A++ +  T++
Sbjct: 1917 AIKRLNFDGQLAGEQRLLELNEMKEFRAQAYEKARIYKEKTKK 1959

[Close]
BLAST of Lag0000245 vs. ExPASy TrEMBL
Match: A0A2G9H2I8 (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_15662 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.1e-43
Identity = 93/152 (61.18%), Postives = 110/152 (72.37%), Query Frame = 0 

Query: 123  GGQYNHGTVDYVSKWVEAIACHQNDAKTVSWITASYLPQANGQAEVSNREIKSILEKVVH 182
            G  Y     DYVSKWVE +A   ND+K V  I+  Y PQ +GQ EVSNREIK ILEK V 
Sbjct: 1041 GNMYILVAGDYVSKWVETVAVPNNDSKVV--ISTPYHPQTSGQVEVSNREIKRILEKTVS 1100

Query: 183  PSRKDWSFRLDEALWAYRTTYNTPLGMSPYRLVYGKASHLPSELEHKTFWALKKLNFDLS 242
             +RKDWS RLDEALWAYRT + TP+GMSPY LV+GKA HLP ELEH  +WA++KLNFD+ 
Sbjct: 1101 STRKDWSKRLDEALWAYRTAFKTPIGMSPYHLVFGKACHLPVELEHNAYWAIRKLNFDMQ 1160

Query: 243  RTDAIRMLQLNELEEFRQFSYENAKMKERATE 275
                 R+LQLNEL+EFR  SYENAK+ +  T+
Sbjct: 1161 AAGEKRLLQLNELDEFRLQSYENAKIYKEKTK 1190

[Close]
BLAST of Lag0000245 vs. ExPASy TrEMBL
Match: A0A438FGE3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_106734 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.6e-43
Identity = 91/145 (62.76%), Postives = 112/145 (77.24%), Query Frame = 0 

Query: 131 VDYVSKWVEAIACHQNDAKTVSWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSF 190
           VDYVSKWVEA A   NDAK    IT  Y PQANGQAE+SNREIK+ILEK V+ +RKDW+ 
Sbjct: 173 VDYVSKWVEATATTTNDAK--HKITLVYHPQANGQAEISNREIKNILEKTVNTNRKDWAK 232

Query: 191 RLDEALWAYRTTYNTPLGMSPYRLVYGKASHLPSELEHKTFWALKKLNFDLSRTDAIRML 250
           +LD+ALWAY T + TP+GMSPYRLV+GKA HLP ELEH+ +W +KK NFDL      R+L
Sbjct: 233 KLDDALWAYCTCFKTPIGMSPYRLVFGKACHLPVELEHRAYWVVKKFNFDLKAVGEKRLL 292

Query: 251 QLNELEEFRQFSYENAKMKERATEE 276
           QLNE++EFR  +YENAK+ +  T++
Sbjct: 293 QLNEIDEFRNDAYENAKIYKEQTKK 315

[Close]
BLAST of Lag0000245 vs. ExPASy TrEMBL
Match: A0A438HB08 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Vitis vinifera OX=29760 GN=pol_280 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 7.5e-41
Identity = 94/170 (55.29%), Postives = 113/170 (66.47%), Query Frame = 0 

Query: 116  CWGEE-------RGGGQYNHGTVDYVSKWVEAIACHQNDAKTV----SWITASYLPQANG 175
            CWG +         G  Y    VDYVSKWVEA+AC  ND K        ++  Y PQ NG
Sbjct: 1034 CWGLDFMGPFPPSFGNLYILVGVDYVSKWVEAVACKSNDHKVKYGVRHKVSTPYHPQTNG 1093

Query: 176  QAEVSNREIKSILEKVVHPSRKDWSFRLDEALWAYRTTYNTPLGMSPYRLVYGKASHLPS 235
            QAE++NREIK IL KVV+ +RKDWS +L +ALWAYRT Y T LGMSPYR+VYGKA HLP 
Sbjct: 1094 QAELANREIKRILTKVVNTTRKDWSTKLSDALWAYRTAYKTVLGMSPYRIVYGKACHLPV 1153

Query: 236  ELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYE---NAKMKER 272
            ELEH+ +WA+KK+NFDL +  A R   LNELE +R  SYE   NA+ K +
Sbjct: 1154 ELEHRAYWAVKKMNFDLDQAGAKRKYDLNELEAYRNESYECLRNAREKHK 1203

[Close]
BLAST of Lag0000245 vs. ExPASy TrEMBL
Match: A0A5E4G4K7 (PREDICTED: LOW QUALITY PROTEIN (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B004320 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.2e-40
Identity = 93/185 (50.27%), Postives = 111/185 (60.00%), Query Frame = 0 

Query: 131 VDYVSKWVEAIACHQNDAKTV--------------------------------------- 190
           VDYVSKWVEAIA   ND K V                                       
Sbjct: 429 VDYVSKWVEAIATKTNDHKVVLKFLRDNIFTRFGTPRAVISDGGSHFCNKLFEALMKKYN 488

Query: 191 --SWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSFRLDEALWAYRTTYNTPLGM 250
               ++  Y PQ +GQ E+SNREIK ILEKVV+ +RKDW+ +L++ALWAYRT Y TP+GM
Sbjct: 489 ITHRVSTPYHPQTSGQVEISNREIKQILEKVVNSTRKDWAAKLNDALWAYRTAYKTPIGM 548

Query: 251 SPYRLVYGKASHLPSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMK 275
           SPYRLV+GKA HLP ELEH  FWA+KKLNFDL +   +R  QLNELEE R  SYENAK+ 
Sbjct: 549 SPYRLVFGKACHLPMELEHNAFWAIKKLNFDLDKAGHVRKFQLNELEEIRHESYENAKLY 608

The following BLAST results are available for this feature:
BLAST of Lag0000245 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8661092.15.1e-4458.90DNA-directed RNA polymerase V subunit 5C-like [Hibiscus syriacus][more]
XP_023521407.18.7e-4452.85LOW QUALITY PROTEIN: uncharacterized protein LOC111785222 [Cucurbita pepo subsp.... [more]
PIN11732.14.3e-4361.18DNA-directed DNA polymerase [Handroanthus impetiginosus][more]
XP_028785069.15.7e-4352.31uncharacterized protein LOC114740981 [Prosopis alba][more]
RVW59036.17.4e-4362.76hypothetical protein CK203_106734 [Vitis vinifera][more]
BLAST of Lag0000245 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0000245 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A2WLX12.5e-4458.90Reverse transcriptase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116939pilonHS... [more]
A0A2G9H2I82.1e-4361.18DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_156... [more]
A0A438FGE33.6e-4362.76Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_106734 PE=4 SV=1[more]
A0A438HB087.5e-4155.29Retrovirus-related Pol polyprotein from transposon 17.6 OS=Vitis vinifera OX=297... [more]
A0A5E4G4K72.2e-4050.27PREDICTED: LOW QUALITY PROTEIN (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B0... [more]
BLAST of Lag0000245 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 415..435
NoneNo IPR availableCOILSCoilCoilcoord: 341..361
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 408..424
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 325..461
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 269..310
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 425..441
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 442..460
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 325..346
NoneNo IPR availablePANTHERPTHR46148FAMILY NOT NAMEDcoord: 126..152
coord: 156..331
NoneNo IPR availablePANTHERPTHR46148:SF31PROTEIN NYNRIN-LIKEcoord: 126..152
coord: 156..331
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 151..251
e-value: 5.4E-19
score: 70.2
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 117..224

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000245.1Lag0000245.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
biological_process GO:0009059 macromolecule biosynthetic process
biological_process GO:0034654 nucleobase-containing compound biosynthetic process
cellular_component GO:0016020 membrane
molecular_function GO:0140640 catalytic activity, acting on a nucleic acid
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016779 nucleotidyltransferase activity