Lag0000240 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000240
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr4: 1941009 .. 1941632 (+)
RNA-Seq Expression	Lag0000240
Synteny	Lag0000240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTTTTTTGTCGGAGAGAAGTTCTTCAGATGCGATTTCTCAAATTTCCAAATTTATCAATCCTAGGAGCAAGACTTCTACGCCAAAATTAGATGAAGAGAATTTCTTGATGTGGAAATTTCAAGTCTCGATCACGCTTCGCGGCCATGGACTTCAGAAATTTATTGATCCCGATAGTGATCCACCGTCAAAATTTCTGAACTCAGCTGATGAATCCTCTCCTGCTCGCATTCCTAATCCCGAATACGACTACTGGATTCAACAGGACAATCTCATTACAGCAAGGCTTCTCAATTCCATGAATCTGTCATTGTTGCTGAACTTCTTGATTGCAAGACTTCCAAAGAGGTATGGTCTCATCTTTCAAATCACTTCTCATCGAAAACACATGGCTAGGGTTCTTGAATTGAAAACGAAACTTGGAACAACCAAGAAAGGTACTTCTGGTCTGCAAGAATATTTTACAAAAATAAAGAATTTGGTTGATTCTTTGGCGGTAGCAGAGCATTCAATTTCACACAGTGATCATGTCCTCTACATCCTAGGGGGTCTTGGTCCTGAATATGACCCTACTGTCTCTGTTCTAACTGGAGATGACACATTTCCTCCTTTGCAATGA

mRNA sequence

ATGAGTTCTTTTTTGTCGGAGAGAAGTTCTTCAGATGCGATTTCTCAAATTTCCAAATTTATCAATCCTAGGAGCAAGACTTCTACGCCAAAATTAGATGAAGAGAATTTCTTGATGTGGAAATTTCAAGTCTCGATCACGCTTCGCGGCCATGGACTTCAGAAATTTATTGATCCCGATAGTGATCCACCGTCAAAATTTCTGAACTCAGCTGATGAATCCTCTCCTGCTCGCATTCCTAATCCCGAATACGACTACTGGATTCAACAGGACAATCTCATTACAGCAAGGCTTCTCAATTCCATGAATCTGTCATTGTTGCTGAACTTCTTGATTGCAAGACTTCCAAAGAGGTATGGTCTCATCTTTCAAATCACTTCTCATCGAAAACACATGGCTAGGGTTCTTGAATTGAAAACGAAACTTGGAACAACCAAGAAAGGTACTTCTGGTCTGCAAGAATATTTTACAAAAATAAAGAATTTGGTTGATTCTTTGGCGGTAGCAGAGCATTCAATTTCACACAGTGATCATGTCCTCTACATCCTAGGGGGTCTTGGTCCTGAATATGACCCTACTGTCTCTGTTCTAACTGGAGATGACACATTTCCTCCTTTGCAATGA

Coding sequence (CDS)

ATGAGTTCTTTTTTGTCGGAGAGAAGTTCTTCAGATGCGATTTCTCAAATTTCCAAATTTATCAATCCTAGGAGCAAGACTTCTACGCCAAAATTAGATGAAGAGAATTTCTTGATGTGGAAATTTCAAGTCTCGATCACGCTTCGCGGCCATGGACTTCAGAAATTTATTGATCCCGATAGTGATCCACCGTCAAAATTTCTGAACTCAGCTGATGAATCCTCTCCTGCTCGCATTCCTAATCCCGAATACGACTACTGGATTCAACAGGACAATCTCATTACAGCAAGGCTTCTCAATTCCATGAATCTGTCATTGTTGCTGAACTTCTTGATTGCAAGACTTCCAAAGAGGTATGGTCTCATCTTTCAAATCACTTCTCATCGAAAACACATGGCTAGGGTTCTTGAATTGAAAACGAAACTTGGAACAACCAAGAAAGGTACTTCTGGTCTGCAAGAATATTTTACAAAAATAAAGAATTTGGTTGATTCTTTGGCGGTAGCAGAGCATTCAATTTCACACAGTGATCATGTCCTCTACATCCTAGGGGGTCTTGGTCCTGAATATGACCCTACTGTCTCTGTTCTAACTGGAGATGACACATTTCCTCCTTTGCAATGA

Protein sequence

MSSFLSERSSSDAISQISKFINPRSKTSTPKLDEENFLMWKFQVSITLRGHGLQKFIDPDSDPPSKFLNSADESSPARIPNPEYDYWIQQDNLITARLLNSMNLSLLLNFLIARLPKRYGLIFQITSHRKHMARVLELKTKLGTTKKGTSGLQEYFTKIKNLVDSLAVAEHSISHSDHVLYILGGLGPEYDPTVSVLTGDDTFPPLQ

Homology

[Close]

BLAST of Lag0000240 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 162.2 bits (409), Expect = 4.9e-36
Identity = 93/210 (44.29%), Postives = 134/210 (63.81%), Query Frame = 0


Query: 1   MSSFLSERSSSDA-ISQISKFINPRSKTSTPKLDEENFLMWKFQVSITLRGHGLQKFIDP 60
           M+S  S R+S  A I Q SK INP SK S  +L+++N L+WKFQ+   L+G+GL+ +ID 
Sbjct: 1   MASLSSIRNSDAARIIQASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDS 60

Query: 61  DSDPPSKFLNSA-DESSPARI-PNPEYDYWIQQDNLITARLLNSMNLSLLLNFLIARLPK 120
           + D P++F+ +  DESS + +  NP Y  WI+QD LI+A LL SMN  +L   L  +  +
Sbjct: 61  NEDTPAQFVQTTEDESSSSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAR 120

Query: 121 RYGLIFQITSHRKHMARVLELKTKLGTTKKGTSGLQEYFTKIKNLVDSLAVAEHSISHSD 180
               + +     + +ARV++LK KL   KKG   L++YF KIKNLVDSLA+A   +S  D
Sbjct: 121 EIWTVLECMFASRTLARVMQLKLKLENFKKGNLSLKDYFLKIKNLVDSLAIAGKKLSTED 180

Query: 181 HVLYILGGLGPEYDPTVSVLTGDDTFPPLQ 208
           H+++IL GLGPE+D  +SV+T  +    LQ
Sbjct: 181 HIMHILAGLGPEFDAIISVITARNMPQTLQ 210

[Close]

BLAST of Lag0000240 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-30
Identity = 74/160 (46.25%), Postives = 107/160 (66.88%), Query Frame = 0


Query: 41  KFQVSITLRGHGLQKFIDPDSDPPSKFLNSAD--ESSPARIPNPEYDYWIQQDNLITARL 100
           KFQV   ++GHGL+++ID D +PPS+F+ + D   SS  + PNPEY +WI+QD LI+  L
Sbjct: 19  KFQVLTAIQGHGLEQYIDSDIEPPSRFIQNGDGVTSSTTQQPNPEYFHWIKQDKLISLWL 78

Query: 101 LNSMNLSLLLNFLIARLPKRYGLIFQITSHRKHMARVLELKTKLGTTKKGTSGLQEYFTK 160
           L SM+  +L   L  R+ K    + + T   +++ARV++LK+KL   KKG+  L+ YF K
Sbjct: 79  LGSMSEEILSQMLDCRMVKEIWTLLECTFASRNLARVMQLKSKLENMKKGSMNLKNYFLK 138

Query: 161 IKNLVDSLAVAEHSISHSDHVLYILGGLGPEYDPTVSVLT 199
           IKNLVDSLA A   +   DH+++IL  LGPE+D  VSV++
Sbjct: 139 IKNLVDSLATAGKRLPTDDHIMHILARLGPEFDSIVSVIS 178

[Close]

BLAST of Lag0000240 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 1.7e-28
Identity = 74/200 (37.00%), Postives = 116/200 (58.00%), Query Frame = 0


Query: 10  SSDAISQISKFINPRSKTSTPKLDEENFLMWKFQVSITLRGHGLQKFIDPDSDPPSKFLN 69
           +++A S I++     +K S  KL+++ FL+WKFQ+   L  + L+ F++ +S+PPSK+L 
Sbjct: 12  NTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYLI 71

Query: 70  SADESSPAR--IPNPEYDYWIQQDNLITARLLNSMNLSLLLNFLIARLPKRYGLIFQITS 129
           S + SS +    PNP Y  W +QD LI++ LL SM+  +L   L  +  K      Q   
Sbjct: 72  STESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIF 131

Query: 130 HRKHMARVLELKTKLGTTKKGTSGLQEYFTKIKNLVDSLAVAEHSISHSDHVLYILGGLG 189
             +++A+ ++ K KL   KKG+  L+EYF KI   VD+LA     +S  DH+LYIL GLG
Sbjct: 132 SSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLG 191

Query: 190 PEYDPTVSVLTGDDTFPPLQ 208
            +Y   +SV++     P +Q
Sbjct: 192 SDYQSMISVISARTDSPSVQ 211

[Close]

BLAST of Lag0000240 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 1.7e-28
Identity = 74/200 (37.00%), Postives = 116/200 (58.00%), Query Frame = 0


Query: 10  SSDAISQISKFINPRSKTSTPKLDEENFLMWKFQVSITLRGHGLQKFIDPDSDPPSKFLN 69
           +++A S I++     +K S  KL+++ FL+WKFQ+   L  + L+ F++ +S+PPSK+L 
Sbjct: 12  NTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYLI 71

Query: 70  SADESSPAR--IPNPEYDYWIQQDNLITARLLNSMNLSLLLNFLIARLPKRYGLIFQITS 129
           S + SS +    PNP Y  W +QD LI++ LL SM+  +L   L  +  K      Q   
Sbjct: 72  STESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIF 131

Query: 130 HRKHMARVLELKTKLGTTKKGTSGLQEYFTKIKNLVDSLAVAEHSISHSDHVLYILGGLG 189
             +++A+ ++ K KL   KKG+  L+EYF KI   VD+LA     +S  DH+LYIL GLG
Sbjct: 132 SSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLG 191

Query: 190 PEYDPTVSVLTGDDTFPPLQ 208
            +Y   +SV++     P +Q
Sbjct: 192 SDYQSMISVISARTDSPSVQ 211

[Close]

BLAST of Lag0000240 vs. NCBI nr
Match: KAA0067213.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 8.5e-28
Identity = 73/190 (38.42%), Postives = 113/190 (59.47%), Query Frame = 0


Query: 10  SSDAISQISKFINPRSKTSTPKLDEENFLMWKFQVSITLRGHGLQKFIDPDSDPPSKFLN 69
           +++A S I++     +K S  KL ++NFL+WKFQ+   L  + L+ F++ +S+PPSK+L 
Sbjct: 12  NTEASSPINQIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESEPPSKYLI 71

Query: 70  SADESSPA--RIPNPEYDYWIQQDNLITARLLNSMNLSLLLNFLIARLPKRYGLIFQITS 129
           S   SS +  R PNP Y  W +QD LI++ LL SM+  +L   L  +  K      Q   
Sbjct: 72  STGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWGTLQGIF 131

Query: 130 HRKHMARVLELKTKLGTTKKGTSGLQEYFTKIKNLVDSLAVAEHSISHSDHVLYILGGLG 189
             +++A+ ++ K KL   KK +  L+EYF KI++ VD+LA     +S  DH+LYIL GLG
Sbjct: 132 SSRYLAQAMKFKNKLHNIKKESMPLKEYFLKIQHRVDALASINKPVSSDDHILYILAGLG 191

Query: 190 PEYDPTVSVL 198
            +Y   +SV+
Sbjct: 192 SDYQSMISVI 201

[Close]

BLAST of Lag0000240 vs. ExPASy TrEMBL
Match: A0A6J1DLT9 (uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021757 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 2.4e-36
Identity = 93/210 (44.29%), Postives = 134/210 (63.81%), Query Frame = 0


Query: 1   MSSFLSERSSSDA-ISQISKFINPRSKTSTPKLDEENFLMWKFQVSITLRGHGLQKFIDP 60
           M+S  S R+S  A I Q SK INP SK S  +L+++N L+WKFQ+   L+G+GL+ +ID 
Sbjct: 1   MASLSSIRNSDAARIIQASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDS 60

Query: 61  DSDPPSKFLNSA-DESSPARI-PNPEYDYWIQQDNLITARLLNSMNLSLLLNFLIARLPK 120
           + D P++F+ +  DESS + +  NP Y  WI+QD LI+A LL SMN  +L   L  +  +
Sbjct: 61  NEDTPAQFVQTTEDESSSSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAR 120

Query: 121 RYGLIFQITSHRKHMARVLELKTKLGTTKKGTSGLQEYFTKIKNLVDSLAVAEHSISHSD 180
               + +     + +ARV++LK KL   KKG   L++YF KIKNLVDSLA+A   +S  D
Sbjct: 121 EIWTVLECMFASRTLARVMQLKLKLENFKKGNLSLKDYFLKIKNLVDSLAIAGKKLSTED 180

Query: 181 HVLYILGGLGPEYDPTVSVLTGDDTFPPLQ 208
           H+++IL GLGPE+D  +SV+T  +    LQ
Sbjct: 181 HIMHILAGLGPEFDAIISVITARNMPQTLQ 210

[Close]

BLAST of Lag0000240 vs. ExPASy TrEMBL
Match: A0A6J1DSS1 (uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023586 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.2e-31
Identity = 74/160 (46.25%), Postives = 107/160 (66.88%), Query Frame = 0


Query: 41  KFQVSITLRGHGLQKFIDPDSDPPSKFLNSAD--ESSPARIPNPEYDYWIQQDNLITARL 100
           KFQV   ++GHGL+++ID D +PPS+F+ + D   SS  + PNPEY +WI+QD LI+  L
Sbjct: 19  KFQVLTAIQGHGLEQYIDSDIEPPSRFIQNGDGVTSSTTQQPNPEYFHWIKQDKLISLWL 78

Query: 101 LNSMNLSLLLNFLIARLPKRYGLIFQITSHRKHMARVLELKTKLGTTKKGTSGLQEYFTK 160
           L SM+  +L   L  R+ K    + + T   +++ARV++LK+KL   KKG+  L+ YF K
Sbjct: 79  LGSMSEEILSQMLDCRMVKEIWTLLECTFASRNLARVMQLKSKLENMKKGSMNLKNYFLK 138

Query: 161 IKNLVDSLAVAEHSISHSDHVLYILGGLGPEYDPTVSVLT 199
           IKNLVDSLA A   +   DH+++IL  LGPE+D  VSV++
Sbjct: 139 IKNLVDSLATAGKRLPTDDHIMHILARLGPEFDSIVSVIS 178

[Close]

BLAST of Lag0000240 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 8.2e-29
Identity = 74/200 (37.00%), Postives = 116/200 (58.00%), Query Frame = 0


Query: 10  SSDAISQISKFINPRSKTSTPKLDEENFLMWKFQVSITLRGHGLQKFIDPDSDPPSKFLN 69
           +++A S I++     +K S  KL+++ FL+WKFQ+   L  + L+ F++ +S+PPSK+L 
Sbjct: 12  NTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYLI 71

Query: 70  SADESSPAR--IPNPEYDYWIQQDNLITARLLNSMNLSLLLNFLIARLPKRYGLIFQITS 129
           S + SS +    PNP Y  W +QD LI++ LL SM+  +L   L  +  K      Q   
Sbjct: 72  STESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIF 131

Query: 130 HRKHMARVLELKTKLGTTKKGTSGLQEYFTKIKNLVDSLAVAEHSISHSDHVLYILGGLG 189
             +++A+ ++ K KL   KKG+  L+EYF KI   VD+LA     +S  DH+LYIL GLG
Sbjct: 132 SSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLG 191

Query: 190 PEYDPTVSVLTGDDTFPPLQ 208
            +Y   +SV++     P +Q
Sbjct: 192 SDYQSMISVISARTDSPSVQ 211

[Close]

BLAST of Lag0000240 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 8.2e-29
Identity = 74/200 (37.00%), Postives = 116/200 (58.00%), Query Frame = 0


Query: 10  SSDAISQISKFINPRSKTSTPKLDEENFLMWKFQVSITLRGHGLQKFIDPDSDPPSKFLN 69
           +++A S I++     +K S  KL+++ FL+WKFQ+   L  + L+ F++ +S+PPSK+L 
Sbjct: 12  NTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYLI 71

Query: 70  SADESSPAR--IPNPEYDYWIQQDNLITARLLNSMNLSLLLNFLIARLPKRYGLIFQITS 129
           S + SS +    PNP Y  W +QD LI++ LL SM+  +L   L  +  K      Q   
Sbjct: 72  STESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIF 131

Query: 130 HRKHMARVLELKTKLGTTKKGTSGLQEYFTKIKNLVDSLAVAEHSISHSDHVLYILGGLG 189
             +++A+ ++ K KL   KKG+  L+EYF KI   VD+LA     +S  DH+LYIL GLG
Sbjct: 132 SSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLG 191

Query: 190 PEYDPTVSVLTGDDTFPPLQ 208
            +Y   +SV++     P +Q
Sbjct: 192 SDYQSMISVISARTDSPSVQ 211

[Close]

BLAST of Lag0000240 vs. ExPASy TrEMBL
Match: A0A5A7VGJ8 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00160 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.1e-28
Identity = 73/190 (38.42%), Postives = 113/190 (59.47%), Query Frame = 0


Query: 10  SSDAISQISKFINPRSKTSTPKLDEENFLMWKFQVSITLRGHGLQKFIDPDSDPPSKFLN 69
           +++A S I++     +K S  KL ++NFL+WKFQ+   L  + L+ F++ +S+PPSK+L 
Sbjct: 12  NTEASSPINQIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESEPPSKYLI 71

Query: 70  SADESSPA--RIPNPEYDYWIQQDNLITARLLNSMNLSLLLNFLIARLPKRYGLIFQITS 129
           S   SS +  R PNP Y  W +QD LI++ LL SM+  +L   L  +  K      Q   
Sbjct: 72  STGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWGTLQGIF 131

Query: 130 HRKHMARVLELKTKLGTTKKGTSGLQEYFTKIKNLVDSLAVAEHSISHSDHVLYILGGLG 189
             +++A+ ++ K KL   KK +  L+EYF KI++ VD+LA     +S  DH+LYIL GLG
Sbjct: 132 SSRYLAQAMKFKNKLHNIKKESMPLKEYFLKIQHRVDALASINKPVSSDDHILYILAGLG 191

Query: 190 PEYDPTVSVL 198
            +Y   +SV+
Sbjct: 192 SDYQSMISVI 201

[Close]

BLAST of Lag0000240 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 3.3e-06
Identity = 24/72 (33.33%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 133 ARVLELKTKLGTTKKGTSGLQEYFTKIKNLVDSLAVAEHSISHSDHVLYILGGLGPEYDP 192
           AR L L ++L T   G   + +Y+ K+K L DSL   +  ++  + V+Y+L GL P++D 
Sbjct: 112 ARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDN 171

Query: 193 TVSVLTGDDTFP 205
            ++V+     FP
Sbjct: 172 IINVIKHRQPFP 183

The following BLAST results are available for this feature:

BLAST of Lag0000240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154487.1	4.9e-36	44.29	uncharacterized protein LOC111021757 [Momordica charantia]	[more]
XP_022156747.1	1.1e-30	46.25	uncharacterized protein LOC111023586 [Momordica charantia]	[more]
KAA0048297.1	1.7e-28	37.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK10642.1	1.7e-28	37.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0067213.1	8.5e-28	38.42	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]

BLAST of Lag0000240 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0000240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLT9	2.4e-36	44.29	uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1DSS1	5.2e-31	46.25	uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A5A7U233	8.2e-29	37.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CH97	8.2e-29	37.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VGJ8	4.1e-28	38.42	Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Lag0000240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34070.1	3.3e-06	33.33	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 87..199 e-value: 5.6E-8 score: 32.6
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 27..198
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 27..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000240.1	Lag0000240.1	mRNA