Lag0000167 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000167
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein FAR-RED ELONGATED HYPOCOTYL 3-like
Locationchr4: 760686 .. 761477 (-)
RNA-Seq ExpressionLag0000167
SyntenyLag0000167
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACACGTGAGGTATGCGTGACCATTGTCAATATTTATTTTCCACATTTATCCTTATTGCGTTTTCAAACACCAGAGGGGGGCCTACATGCCTACGGTGTATCCAAACTTCCTCCCAACAGATTTTCCATTCTTCTCGGTTCAAATTATTTTATTAGATTTTTCAAATCGTTTTCAAATTTAGTTTAACAAACTTTCATATATTACATTAATATTAAGATAACTAAATACCATTTTTTTTTCATAATTAATCGGGGGAGATATCAAAAATCTGGATTTTTTCTTCCATCGATGAGTTCATCGTTCATTTGACACCAAAGCATTTTCAATTTCCAGGTGTTGCATCTTCGGTTTACAGAGGCTGCACACTGTATGCTCAATATACAACAGGTATTTTCGGGGTTTCAGATGCAGATGCACTCCATGCCGCCAGTTGGTTTGCTGAATGTTGTGGTTCTATTCAGTGGGAGGTGGGATGAAAACAATCGGTACAATGGGTTTAAGTCCGACAGTGTGCCAGTACCGGAGGGATGCACAATACAAGAGTTCAATGAATGTATCCGAAGCAAGGTATTTCCATCGGACGAGCACATGATCACTCGGTTAACCATGTACAGGAATGGTATCAACAAGGCTAATATAATCTGGATCACTGACGACAGGGATGTTACTTGGGTCATGTCCAACATTGGCGATGGGATGGCTAATGACATATGCGTTGTGGCTGACCACTGTGAGATAGATTCACACTCTAGGAATGTAGTGCATTTACAAGATGGAAATCACTGA

mRNA sequence

ATGGCCACACGTGAGGTGTTGCATCTTCGGTTTACAGAGGCTGCACACTGTATGCTCAATATACAACAGGTATTTTCGGGGTTTCAGATGCAGATGCACTCCATGCCGCCAGTTGGTTTGCTGAATGTTGTGGTTCTATTCAGTGGGAGGTGGGATGAAAACAATCGGTACAATGGGTTTAAGTCCGACAGTGTGCCAGTACCGGAGGGATGCACAATACAAGAGTTCAATGAATGTATCCGAAGCAAGGTATTTCCATCGGACGAGCACATGATCACTCGGTTAACCATGTACAGGAATGGTATCAACAAGGCTAATATAATCTGGATCACTGACGACAGGGATGTTACTTGGGTCATGTCCAACATTGGCGATGGGATGGCTAATGACATATGCGTTGTGGCTGACCACTGTGAGATAGATTCACACTCTAGGAATGTAGTGCATTTACAAGATGGAAATCACTGA

Coding sequence (CDS)

ATGGCCACACGTGAGGTGTTGCATCTTCGGTTTACAGAGGCTGCACACTGTATGCTCAATATACAACAGGTATTTTCGGGGTTTCAGATGCAGATGCACTCCATGCCGCCAGTTGGTTTGCTGAATGTTGTGGTTCTATTCAGTGGGAGGTGGGATGAAAACAATCGGTACAATGGGTTTAAGTCCGACAGTGTGCCAGTACCGGAGGGATGCACAATACAAGAGTTCAATGAATGTATCCGAAGCAAGGTATTTCCATCGGACGAGCACATGATCACTCGGTTAACCATGTACAGGAATGGTATCAACAAGGCTAATATAATCTGGATCACTGACGACAGGGATGTTACTTGGGTCATGTCCAACATTGGCGATGGGATGGCTAATGACATATGCGTTGTGGCTGACCACTGTGAGATAGATTCACACTCTAGGAATGTAGTGCATTTACAAGATGGAAATCACTGA

Protein sequence

MATREVLHLRFTEAAHCMLNIQQVFSGFQMQMHSMPPVGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIWITDDRDVTWVMSNIGDGMANDICVVADHCEIDSHSRNVVHLQDGNH
Homology
BLAST of Lag0000167 vs. NCBI nr
Match: XP_038887125.1 (uncharacterized protein LOC120077310 [Benincasa hispida])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 44/114 (38.60%), Postives = 71/114 (62.28%), Query Frame = 0

Query: 40  LLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYR 99
           L  V +LF+GRWDEN++Y+ F+     +P   + Q+F E I+ K+FPS E  I+RL MY 
Sbjct: 3   LQRVKLLFNGRWDENSQYHDFRDCDAYIPSNSSFQQFVEYIQGKLFPSGELTISRLIMYW 62

Query: 100 NGINKANIIWITDDRDVTWVMSNIGDGMANDICVVADH-CEIDSHSRNVVHLQD 153
            G + +N+I I +D+ + W+M  + D    D+CVV DH   +  +S+N ++L +
Sbjct: 63  IGSSNSNLISIVEDKYILWLMLMLPDSPEIDLCVVVDHVSSVAQNSQNTLYLNN 116

BLAST of Lag0000167 vs. NCBI nr
Match: KAA0064137.1 (MuDRA-like transposase [Cucumis melo var. makuwa] >TYK28603.1 MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-12
Identity = 37/99 (37.37%), Postives = 58/99 (58.59%), Query Frame = 0

Query: 38  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTM 97
           + L  V  +F  RW E+ RY  ++   V VP   + QEF  CI+ ++FP+ E  ++RLT+
Sbjct: 1   MALQRVKTVFHDRWIESCRYIDYRLLDVYVPVSSSFQEFANCIQHRLFPNSEVSVSRLTL 60

Query: 98  YRNGINKANIIWITDDRDVTWVMSNIGDGMANDICVVAD 137
           Y    N + +IWI DD+DV+W+M  +     ND+ +V D
Sbjct: 61  YWKYCNNSKLIWIVDDKDVSWIMLVLSKFPDNDLLIVVD 99

BLAST of Lag0000167 vs. NCBI nr
Match: KAA0047392.1 (uncharacterized protein E6C27_scaffold754G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-12
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 0

Query: 38  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTM 97
           + L  V  +F GRW E+ RY  ++   V VP   + QEF  CI+ ++FP+ E  ++RLT+
Sbjct: 1   MALQRVKTVFDGRWIESCRYIDYRLLDVYVPVSSSFQEFANCIQRRLFPNSEVSVSRLTV 60

Query: 98  YRNGINKANIIWITDDRDVTWVMSNIGDGMANDICVVAD 137
           Y    N +N+I I DD+DV+W+M  I     ND+ VV +
Sbjct: 61  YWKDCNNSNLIRIVDDKDVSWIMLVISKFPDNDLLVVVE 99

BLAST of Lag0000167 vs. NCBI nr
Match: TYK14069.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-12
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 0

Query: 38  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTM 97
           + L  V  +F GRW E+ RY  ++   V VP   + QEF  CI+ ++FP+ E  ++RLT+
Sbjct: 1   MALQRVKTVFDGRWIESCRYIDYRLLDVYVPVSSSFQEFANCIQRRLFPNSEVSVSRLTV 60

Query: 98  YRNGINKANIIWITDDRDVTWVMSNIGDGMANDICVVAD 137
           Y    N +N+I I DD+DV+W+M  I     ND+ VV +
Sbjct: 61  YWKDCNNSNLIRIVDDKDVSWIMLVISKFPDNDLLVVVE 99

BLAST of Lag0000167 vs. NCBI nr
Match: KAA0066503.1 (uncharacterized protein E6C27_scaffold25G00500 [Cucumis melo var. makuwa] >TYK06137.1 uncharacterized protein E5676_scaffold572G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-11
Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = 0

Query: 38  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTM 97
           + L  V  +F GRW E+ RY  ++   V VP   + QEF  CI  ++FP+ E  ++RLT+
Sbjct: 1   MALQRVKTVFDGRWIESCRYIDYRLLDVYVPVPSSFQEFVNCIHRRLFPNSEVSVSRLTV 60

Query: 98  YRNGINKANIIWITDDRDVTWVMSNIGDGMANDICVVAD 137
           Y    N   +I I DD+DV+W+M  I     ND+ +V D
Sbjct: 61  YSKDCNNLKLIRIVDDKDVSWIMLVISKFSNNDLLIVVD 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038887125.11.2e-1538.60uncharacterized protein LOC120077310 [Benincasa hispida][more]
KAA0064137.12.2e-1237.37MuDRA-like transposase [Cucumis melo var. makuwa] >TYK28603.1 MuDRA-like transpo... [more]
KAA0047392.12.2e-1239.39uncharacterized protein E6C27_scaffold754G00490 [Cucumis melo var. makuwa][more]
TYK14069.12.2e-1239.39protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa][more]
KAA0066503.11.1e-1138.38uncharacterized protein E6C27_scaffold25G00500 [Cucumis melo var. makuwa] >TYK06... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000167.1Lag0000167.1mRNA