Lag0000160 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000160
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotransposon protein
Location	chr4: 658714 .. 659677 (-)
RNA-Seq Expression	Lag0000160
Synteny	Lag0000160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGACATCGAAATTCTATGTTGTGTTTGTTGGTCTCAACCCAGGAATTTACACCTCGTGGGTTGAATGCCACAAACAAGTTAACCAGTTTAAGGGAGCACTACACAAGTCGTATCCAACATTTCCAGAAGCAGAGTATGCATTTAGGCATTACGTTACGGGCACTCGTGACGAACCAAACCTCGTTGACCAACATGAAGCGTGTCGTAACCTTCTTGTAGGGGGATGGTCGCGTAGGAAACTGTTATACTATTAGTCGGATGTTCGTAGGGTTCCTGTTCGGAATAATTGTAACTTACGTCATCGTTCAATATCTTTAGAATGCTAGTCTATATCCATGTACGATGAGGAAGACTTTGAACTAAATAAAAGATGGTTTATATTTTGTCCAGGCTGAAGTAGTACCGTTCCTAATGGATTCCATAACCCCACATGAACTTGTGTCCATACTTTCAATAATGGCTGACTCTCAGCGTCAACTATTCAACTTGATCAACTTCTTCATGAACAACAACCGTAGGATAGAAAACCAATCTTCCTACATCAGACACCAGATAAGGCAATTAGTCTGCTTCCGGTTGATCCATGAAAGTGACCTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGTTTTGCCATACTATGTAGTTTGCTGAGAACGATGTCCGGGTTGGTAGGAACAGAAATCGTAGACGTGGAAGAGATGGTCGTGATTTTCTTGCACATCGTTGCTCACGATGTTAAGAATCAAGTCATTAGAAGAAATTTTGCACGGTCAGGCGAGACCGTTTCTCGGCACTTCAACGTGACTTTGAGTGTCGTACTACGATTGTATGACGTTCTACTTAAGAAACCGGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGGTATGGATACTATATGTTTGTACACATAGTGAAGATCTTACAACATCCTTCTGA

mRNA sequence

ATGGGGACATCGAAATTCTATGTTGTGTTTGTTGGTCTCAACCCAGGAATTTACACCTCGTGGGTTGAATGCCACAAACAAGTTAACCAGTTTAAGGGAGCACTACACAAGTCGTATCCAACATTTCCAGAAGCAGAGTATGCATTTAGGCATTACGTTACGGGCACTCGTGACGAACCAAACCTCGTTGACCAACATGAAGCGTGTCGTAACCTTCTTGCTGAAGTAGTACCGTTCCTAATGGATTCCATAACCCCACATGAACTTGTGTCCATACTTTCAATAATGGCTGACTCTCAGCGTCAACTATTCAACTTGATCAACTTCTTCATGAACAACAACCGTAGGATAGAAAACCAATCTTCCTACATCAGACACCAGATAAGGCAATTAGTCTGCTTCCGGTTGATCCATGAAAGTGACCTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGTTTTGCCATACTATGTAGTTTGCTGAGAACGATGTCCGGGTTGGTAGGAACAGAAATCGTAGACGTGGAAGAGATGGTCGTGATTTTCTTGCACATCGTTGCTCACGATGTTAAGAATCAAGTCATTAGAAGAAATTTTGCACGGTCAGGCGAGACCGTTTCTCGGCACTTCAACGTGACTTTGAGTGTCGTACTACGATTGTATGACGTTCTACTTAAGAAACCGGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGGTATGGATACTATATGTTTGTACACATAGTGAAGATCTTACAACATCCTTCTGA

Coding sequence (CDS)

ATGGGGACATCGAAATTCTATGTTGTGTTTGTTGGTCTCAACCCAGGAATTTACACCTCGTGGGTTGAATGCCACAAACAAGTTAACCAGTTTAAGGGAGCACTACACAAGTCGTATCCAACATTTCCAGAAGCAGAGTATGCATTTAGGCATTACGTTACGGGCACTCGTGACGAACCAAACCTCGTTGACCAACATGAAGCGTGTCGTAACCTTCTTGCTGAAGTAGTACCGTTCCTAATGGATTCCATAACCCCACATGAACTTGTGTCCATACTTTCAATAATGGCTGACTCTCAGCGTCAACTATTCAACTTGATCAACTTCTTCATGAACAACAACCGTAGGATAGAAAACCAATCTTCCTACATCAGACACCAGATAAGGCAATTAGTCTGCTTCCGGTTGATCCATGAAAGTGACCTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGTTTTGCCATACTATGTAGTTTGCTGAGAACGATGTCCGGGTTGGTAGGAACAGAAATCGTAGACGTGGAAGAGATGGTCGTGATTTTCTTGCACATCGTTGCTCACGATGTTAAGAATCAAGTCATTAGAAGAAATTTTGCACGGTCAGGCGAGACCGTTTCTCGGCACTTCAACGTGACTTTGAGTGTCGTACTACGATTGTATGACGTTCTACTTAAGAAACCGGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGGTATGGATACTATATGTTTGTACACATAGTGAAGATCTTACAACATCCTTCTGA

Protein sequence

MGTSKFYVVFVGLNPGIYTSWVECHKQVNQFKGALHKSYPTFPEAEYAFRHYVTGTRDEPNLVDQHEACRNLLAEVVPFLMDSITPHELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHIVAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFEVWILYVCTHSEDLTTSF

Homology

[Close]

BLAST of Lag0000160 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.8 bits (517), Expect = 1.9e-48
Identity = 98/159 (61.64%), Postives = 122/159 (76.73%), Query Frame = 0


Query: 87  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRE 146
           HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQL  FR+IH SDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63

Query: 147 STRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHIVAHDVKNQVIRRNFARSGET 206
           STRMDRRCFAILC LLRT++GL  TE+VDVEEMV +FLHI+AHDVKN+VI+R F RSGET
Sbjct: 64  STRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGET 123

Query: 207 VSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE 246
           +SRHFN+ L  V+RL+D LLKKP+P+   C D RW+WFE
Sbjct: 124 ISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

[Close]

BLAST of Lag0000160 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.8 bits (517), Expect = 1.9e-48
Identity = 98/159 (61.64%), Postives = 122/159 (76.73%), Query Frame = 0


Query: 87  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRE 146
           HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQL  FR+IH SDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63

Query: 147 STRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHIVAHDVKNQVIRRNFARSGET 206
           STRMDRRCFAILC LLRT++GL  TE+VDVEEMV +FLHI+AHDVKN+VI+R F RSGET
Sbjct: 64  STRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGET 123

Query: 207 VSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE 246
           +SRHFN+ L  V+RL+D LLKKP+P+   C D RW+WFE
Sbjct: 124 ISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

[Close]

BLAST of Lag0000160 vs. NCBI nr
Match: KAA0048361.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.4 bits (516), Expect = 2.4e-48
Identity = 98/159 (61.64%), Postives = 122/159 (76.73%), Query Frame = 0


Query: 87  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRE 146
           HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQL  FR+IH SDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63

Query: 147 STRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHIVAHDVKNQVIRRNFARSGET 206
           STRMDRRCFAILC LLRT++GL  TE+VDVEEMV +FLHI+AHDVKN+VI+R F RSGET
Sbjct: 64  STRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGET 123

Query: 207 VSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE 246
           +SRHFN+ L  V+RL++ LLKKP+P+   C D RWKWFE
Sbjct: 124 ISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFE 162

[Close]

BLAST of Lag0000160 vs. NCBI nr
Match: KAA0065736.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 202.2 bits (513), Expect = 5.5e-48
Identity = 97/159 (61.01%), Postives = 121/159 (76.10%), Query Frame = 0


Query: 87  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRE 146
           HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQL  FR+IHESDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHESDLVCRQ 63

Query: 147 STRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHIVAHDVKNQVIRRNFARSGET 206
           STRMDRRCFAILC LLRT++GL  TE+VDVEEMV +FLHI+AHDVKN+VI+R F RSGET
Sbjct: 64  STRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGET 123

Query: 207 VSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE 246
           + RHFN+    V+RL+D LLKKP+P+   C D RW+WFE
Sbjct: 124 IFRHFNMIFLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

[Close]

BLAST of Lag0000160 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 202.2 bits (513), Expect = 5.5e-48
Identity = 97/159 (61.01%), Postives = 122/159 (76.73%), Query Frame = 0


Query: 87  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRE 146
           HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQL  FR+IH SDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63

Query: 147 STRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHIVAHDVKNQVIRRNFARSGET 206
           STRMDRRCFAILC LLRT++GL  TE+VDVEEMV +FLHI+AHDVKN+VI+R F RSGET
Sbjct: 64  STRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGET 123

Query: 207 VSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE 246
           +SRHFN+ L  V+RL++ LLKKP+P+   C D RW+WFE
Sbjct: 124 ISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFE 162

[Close]

BLAST of Lag0000160 vs. ExPASy Swiss-Prot
Match: Q9KEI9 (Ribonuclease H OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=rnhA PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.0e-09
Identity = 34/76 (44.74%), Postives = 41/76 (53.95%), Query Frame = 0


Query: 1  MGTSKFYVVFVGLNPGIYTSWVECHKQVNQFKGALHKSYPTFPEAEYAFRHYVTGTRDEP 60
          M  SK+YVV+ G  PGIYTSW  C  QV  + GA  KSYP+  EAE AFR    G    P
Sbjct: 1  MAKSKYYVVWNGRKPGIYTSWSACEAQVKGYTGAKFKSYPSKEEAEAAFR----GEEATP 60

Query: 61 NLVDQHEACRNLLAEV 77
           L  +     +L  +V
Sbjct: 61 KLAKEEIIWESLSVDV 72

[Close]

BLAST of Lag0000160 vs. ExPASy Swiss-Prot
Match: Q07762 (Ribonuclease H OS=Crithidia fasciculata OX=5656 GN=RNH1 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.0e-04
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 6   FYVVFVGLNPGIYTSWVECHKQVNQFKGALHKSYPTFPEAEYAFRHYVT 55
           FYVV VG   GIY++W +C +QV  F GA++KS+ T  EA    R Y+T
Sbjct: 156 FYVVAVGRQRGIYSTWDQCSEQVKGFSGAVYKSFRTLSEA----RAYLT 200

[Close]

BLAST of Lag0000160 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 9.1e-49
Identity = 98/159 (61.64%), Postives = 122/159 (76.73%), Query Frame = 0


Query: 87  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRE 146
           HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQL  FR+IH SDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63

Query: 147 STRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHIVAHDVKNQVIRRNFARSGET 206
           STRMDRRCFAILC LLRT++GL  TE+VDVEEMV +FLHI+AHDVKN+VI+R F RSGET
Sbjct: 64  STRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGET 123

Query: 207 VSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE 246
           +SRHFN+ L  V+RL+D LLKKP+P+   C D RW+WFE
Sbjct: 124 ISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

[Close]

BLAST of Lag0000160 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 9.1e-49
Identity = 98/159 (61.64%), Postives = 122/159 (76.73%), Query Frame = 0


Query: 87  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRE 146
           HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQL  FR+IH SDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63

Query: 147 STRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHIVAHDVKNQVIRRNFARSGET 206
           STRMDRRCFAILC LLRT++GL  TE+VDVEEMV +FLHI+AHDVKN+VI+R F RSGET
Sbjct: 64  STRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGET 123

Query: 207 VSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE 246
           +SRHFN+ L  V+RL+D LLKKP+P+   C D RW+WFE
Sbjct: 124 ISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

[Close]

BLAST of Lag0000160 vs. ExPASy TrEMBL
Match: A0A5A7U476 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00800 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.2e-48
Identity = 98/159 (61.64%), Postives = 122/159 (76.73%), Query Frame = 0


Query: 87  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRE 146
           HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQL  FR+IH SDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63

Query: 147 STRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHIVAHDVKNQVIRRNFARSGET 206
           STRMDRRCFAILC LLRT++GL  TE+VDVEEMV +FLHI+AHDVKN+VI+R F RSGET
Sbjct: 64  STRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGET 123

Query: 207 VSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE 246
           +SRHFN+ L  V+RL++ LLKKP+P+   C D RWKWFE
Sbjct: 124 ISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFE 162

[Close]

BLAST of Lag0000160 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 2.6e-48
Identity = 97/159 (61.01%), Postives = 122/159 (76.73%), Query Frame = 0


Query: 87  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRE 146
           HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQL  FR+IH SDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63

Query: 147 STRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHIVAHDVKNQVIRRNFARSGET 206
           STRMDRRCFAILC LLRT++GL  TE+VDVEEMV +FLHI+AHDVKN+VI+R F RSGET
Sbjct: 64  STRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGET 123

Query: 207 VSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE 246
           +SRHFN+ L  V+RL++ LLKKP+P+   C D RW+WFE
Sbjct: 124 ISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFE 162

[Close]

BLAST of Lag0000160 vs. ExPASy TrEMBL
Match: A0A5A7VHB0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00240 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 2.6e-48
Identity = 97/159 (61.01%), Postives = 121/159 (76.10%), Query Frame = 0


Query: 87  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRE 146
           HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQL  FR+IHESDL CR+
Sbjct: 4   HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHESDLVCRQ 63

Query: 147 STRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHIVAHDVKNQVIRRNFARSGET 206
           STRMDRRCFAILC LLRT++GL  TE+VDVEEMV +FLHI+AHDVKN+VI+R F RSGET
Sbjct: 64  STRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGET 123

Query: 207 VSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE 246
           + RHFN+    V+RL+D LLKKP+P+   C D RW+WFE
Sbjct: 124 IFRHFNMIFLAVIRLHDELLKKPQPVPNECTDQRWRWFE 162

[Close]

BLAST of Lag0000160 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 3.7e-10
Identity = 31/88 (35.23%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 134 FRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHIVAHDVKN 193
           +++++  +  C E+ RMD+  F  LC LL+T   L  T  + +E  + IFL I+ H+++ 
Sbjct: 32  YQILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRT 91

Query: 194 QVIRRNFARSGETVSRHFNVTLSVVLRL 222
           + ++  F  SGET+SRHFN  L+ V+ +
Sbjct: 92  RAVQELFCYSGETISRHFNNVLNAVIAI 119

The following BLAST results are available for this feature:

BLAST of Lag0000160 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046727.1	1.9e-48	61.64	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]
KAA0034843.1	1.9e-48	61.64	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048361.1	2.4e-48	61.64	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065736.1	5.5e-48	61.01	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035620.1	5.5e-48	61.01	retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon...	[more]

BLAST of Lag0000160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9KEI9	4.0e-09	44.74	Ribonuclease H OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 73...	[more]
Q07762	1.0e-04	48.98	Ribonuclease H OS=Crithidia fasciculata OX=5656 GN=RNH1 PE=3 SV=1	[more]

BLAST of Lag0000160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXW1	9.1e-49	61.64	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SWD8	9.1e-49	61.64	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U476	1.2e-48	61.64	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BDX0	2.6e-48	61.01	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VHB0	2.6e-48	61.01	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lag0000160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	3.7e-10	35.23	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011320	Ribonuclease H1, N-terminal	PFAM	PF01693	Cauli_VI	coord: 5..46 e-value: 6.4E-16 score: 58.3
IPR037056	Ribonuclease H1, N-terminal domain superfamily	GENE3D	3.40.970.10		coord: 2..51 e-value: 9.4E-17 score: 63.0
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 126..245
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 126..245
IPR009027	Ribosomal protein L9/RNase H1, N-terminal	SUPERFAMILY	55658	L9 N-domain-like	coord: 5..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000160.1	Lag0000160.1	mRNA