Lag0000151 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000151
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	serine/arginine-rich splicing factor SR34A
Location	chr4: 549953 .. 553745 (-)
RNA-Seq Expression	Lag0000151
Synteny	Lag0000151

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGCCTTATTTTGAGAGTAAAGTTGTTGATGCAGATGGCAATTGGTCATGGTGGAAGATGGTGTTTCTTTCCTTTTGATGATTCATTGAACAGATGTATGATTTTATGACATAACACGTGCAGGCATAATATTACAAACTTGCACAGAGTAATTTGTTGCCTTGAAGATGAGTAGTCGTTTTTCTCGCACGATATATGTTGGAAACTTGCCCTCAGACATAAAAGAATATGAAATTGAAGATCTGTTCTACAAGGTATATTTATTTAGTCATAGCTATTTTTTGCATGTGGTGTCTCTATGCAAATTGTTATTTTCTCCTTTCATATTTTATAATTTGAATACTATTCCCAATTATTTTTAGTTTCTTAGAGAAGTGCATTACAATTGTGCTTTCCAGAATCATTCAAATCTATTTTAATTTTTGATTCTGAATAGAAAATTTACTACATGTATTTTGTGGCTCCTAAATGTTTAACAGTTTAAGGTTTAATTTTTGTGGACTTACGGATTCTACATGATTGATATTTCCTTTGGCAGTATGGTCGAATATTTACTACGGATTCTATTTTAATTTTTGATTCTGAATAGAAAATTTACTACATGTATTTTGTGGCTCCTAAATGTTTAACAGTTTAAGGTTTAATTTTTGTGGACTTACGGATTCTACATGATTGATATTTCCTTTGGCAGTATGGTCGAATATTGGATATTGAATTGAAGATTCCGCCTCGTCCTCCATGTTATTGTTTTGTGGAGGTATTTCTTTTGATCTTTAGTTTTTATTTACATTTTGCTGAATTTGCAAAATTGTTTTTCATGATATTATGTGCTTTTGGTTGTTAGTTTGAGAATGTTAGGGATGCAGAAGATGCAATCCGAGCTCGTGATGGATATAATTTTGATGGTTGTCGTCTAAGGGTATCAACCAAGTCCTCTTTTCCCTTCATTTCCTGATTCCTGGTATTTTTACTTTTATTGATGCTTTCAGTTTTTTTAATAGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCATCAAGTGATCGTCGCAGCAGTTATGGTGGTGGAGGTGGTGGTGGAGGAGGAGGGGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGGTATGGGAATATATATGATTCTGCTATATAAGGAAGCATGCTGCTGACAAAATTCCCACTTAAAATATTCCATTAGGTTCATATTATTTTCAAAGTTCTTATGAATGTTCAATTTTCCTCACAGTTATTGTACGTGGACTACCATCTTCTGCTTCTTGGCAGGATTTGAAGGTGTTAGAATCTTTATTGTTCAACCATAGATTAAGGGTTTCTTTTATTGGATCATGTCGATGACTTTACTGATATAATGCTTTCAGGATCATATGCGCAAAGCTGGTGATGTGTGTTTTGCCGAAGTTTCTCGTGACAGTGAAGGTTTAATTGCAGCCTTTCACACTAATAAGAATTACTATTTTTTTTTAGTTTGTGCAAAATATTTTTACTGTATGAGAATTATTTCTTAAGCCAATGTCGCACATTTGTCTTGTTTTACAAATTCAACTCTTGTGGATATTTTTTATCACGTTCCTAGAGTAATTATAATGCACATGATATGAGTAAGAATGTAAGATGTGTATCATCCATAATTCTTACTGCAAATTTTTAATTTTTATGCATTCCTCTCCTGACCTCAACATAATGTGTCGGACGGGTCTTTATTTTTGTATTTTATATCTGAAAAGTGGTTTACTTTCTATTTAAGATCTATGTATTGAGGTTATGAAATTTGGGTGCATCTCTGGTAGAGGAATACAAGTCAAACTATAAGTTAGACACCCCAGTTAATCTTGCTAATTCTATTCTTTTGGGTAACAGTACACTTGTATGGTTGAAATTTTCTCTAAAGTTATACTTGGTTAAAAACCTTGATGGATTTTGTTTTGGCTCTCATGGGAATTGGGGTTCTGATCTGGTTGTTTTTGATGCCCAATTGATATGTAGATTGTGTAAATCATGTGGTGATGTCTAGCTAGTTTTGGGGAGAAGAGGTCTTAGGATAACTTTGATGTTATTGATGTCTTGTTCCCAGCTTTGGTCCATCACGATTCTTGAATTGGCACAACACATTCTCTTGCAACTTTGAATCATTATCATTTAATTTTCATTGCATGATGGTATTTTGTTGTTAACAAAGTGTTGTGCCACTTCAATATTTGAAGAGGCAGTACTTTTCATTAATTTGTAATCTAGGGTTCTATTTTGAATAAAAAATTGTTTTTATAATGTTTAGCATGTGCCATGCCGCAGAATTGTAGATGATTTACTTTGTAATCACAAGCTGCCTTTTTCCTTTTTCTCTTTACAAGTTTCAACAAAGTTCAGAAACTGAAATTACCTCAATTTGATTTGATAATTAGATTACTATTTACTATTTTAAGTCAATATGTTCAGGGACGTTTGGGGTTGTTGATTATACTAACTATGATGACATGAAATACGCTGTAAGTTTTTCTAAGAGTACGTTTGATCAGAAATCCTGCATTATTTCAATTTGAAAACTGAAGCTTTTCTGTTAATTTAGATCCGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCAAGAGCATACATTCGGGTACCTTAACCTTTTTCCTCTTACCATGTTTATTATTTCGAATTAGCCTACTTTTATGATTTTTTCAGACAGCCTACCCTGTCTGAGTATTTTAAGAAAGTGGATTCAGTTTTTAATGTCACATGTTTGTGATTGACATTTGGTTGCAGGTGAAAAAGTATGATGGAAGTCCTGCTAGGAGTCGGAGCAGAAGTAGAAGCAGAAGCCGTAGTAGAAGCCGGAGTCGAAGTCGAAGCCGAAGCCGAAGCCGAAGTGCTAGACGAAATAGGAGGTACCAGCTTTTCTGTTTTACGGTTATCACTCTCATGGCCTCTTATTCTGTGTTGTAATGTTTCTCGTACCCTGCAGCAAATCAGCAGAACGGTCTGTTTCTAGATCAGTTTCAAGATCAAGATCAAGATCAAGATCTCCTTCTCCTGTTAAATCTTCAAGGTACTCGTGGCCTTTTAGCTCTTTTTTTCGGGTTTAATTACAAGTTTAGTCCTTGAACTTTCAGGTGGTGTCAATTTGGTTCTTGAACTTTAAAAAATGTCCAATAGGTTTTCAAACTTTCAATTTTGTGTTCGGTGGGTACCTAAACTTTATAAAGTATCCAGTAGGTCCCTCAACTTTCAATTTTGTGTCTAATAAGTCATTGACCTATTCAGCGTTTTAATAAATTCGACACAAATTGGAAGTTTAAGGTTCCCATGGACATAAAATTCAATTTTATATCTAATATATTGGCTAATTTTTAAAAATCTCGAATATGTCAGGAGCCTATTAAACATTCTTAAAGTTCAAAAATTTATTATACACAATTAAAAGTTTAGGAACCTATTAGATATTTTTTAAAGTTCTGAGACCAAATTGACACAACTTTGAAAGTTAAGGAACTAAACTTGCAATTTAACCTTTTCTTTTTGTTGGTTTTAAGTTTAGATTTGCCTCTCTTATCAAAAAGGAAAAAGTTTGGATTTGCTTCAAACATAAAGTTGACCAGCTTCTTTTTGCAAAATATGCAGACCACGTTCAAAATCAAGATCTGCATCACCACGTGAGGTATGCAACTTCCAGTTTTTGCTTAAAAAACTGTAG

mRNA sequence

ATGAGCAATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGCCTTATTTTGAGAGTAAAGTTGTTGATGCAGATGGCAATTGGTCATGGTGGAAGATGATGAGTAGTCGTTTTTCTCGCACGATATATGTTGGAAACTTGCCCTCAGACATAAAAGAATATGAAATTGAAGATCTGTTCTACAAGTATGGTCGAATATTGGATATTGAATTGAAGATTCCGCCTCGTCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCAATCCGAGCTCGTGATGGATATAATTTTGATGGTTGTCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCATCAAGTGATCGTCGCAGCAGTTATGGTGGTGGAGGTGGTGGTGGAGGAGGAGGGGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGACTACCATCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGCAAAGCTGGTGATGTGTGTTTTGCCGAAGTTTCTCGTGACAGTGAAGGGACGTTTGGGGTTGTTGATTATACTAACTATGATGACATGAAATACGCTATCCGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCAAGAGCATACATTCGGGTGAAAAAGTATGATGGAAGTCCTGCTAGGAGTCGGAGCAGAAGTAGAAGCAGAAGCCGTAGTAGAAGCCGGAGTCGAAGTCGAAGCCGAAGCCGAAGCCGAAGTGCTAGACGAAATAGGAGCAAATCAGCAGAACGGTCTGTTTCTAGATCAGTTTCAAGATCAAGATCAAGATCAAGATCTCCTTCTCCTGTTAAATCTTCAAGACCACGTTCAAAATCAAGATCTGCATCACCACGTGAGGTATGCAACTTCCAGTTTTTGCTTAAAAAACTGTAG

Coding sequence (CDS)

ATGAGCAATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGCCTTATTTTGAGAGTAAAGTTGTTGATGCAGATGGCAATTGGTCATGGTGGAAGATGATGAGTAGTCGTTTTTCTCGCACGATATATGTTGGAAACTTGCCCTCAGACATAAAAGAATATGAAATTGAAGATCTGTTCTACAAGTATGGTCGAATATTGGATATTGAATTGAAGATTCCGCCTCGTCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCAATCCGAGCTCGTGATGGATATAATTTTGATGGTTGTCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCATCAAGTGATCGTCGCAGCAGTTATGGTGGTGGAGGTGGTGGTGGAGGAGGAGGGGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGACTACCATCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGCAAAGCTGGTGATGTGTGTTTTGCCGAAGTTTCTCGTGACAGTGAAGGGACGTTTGGGGTTGTTGATTATACTAACTATGATGACATGAAATACGCTATCCGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCAAGAGCATACATTCGGGTGAAAAAGTATGATGGAAGTCCTGCTAGGAGTCGGAGCAGAAGTAGAAGCAGAAGCCGTAGTAGAAGCCGGAGTCGAAGTCGAAGCCGAAGCCGAAGCCGAAGTGCTAGACGAAATAGGAGCAAATCAGCAGAACGGTCTGTTTCTAGATCAGTTTCAAGATCAAGATCAAGATCAAGATCTCCTTCTCCTGTTAAATCTTCAAGACCACGTTCAAAATCAAGATCTGCATCACCACGTGAGGTATGCAACTTCCAGTTTTTGCTTAAAAAACTGTAG

Protein sequence

MSNGIVEHGSHRGLLSWFASLFLVLPYFESKVVDADGNWSWWKMMSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPARSRSRSRSRSRSRSRSRSRSRSRSRSARRNRSKSAERSVSRSVSRSRSRSRSPSPVKSSRPRSKSRSASPREVCNFQFLLKKL

Homology

[Close]

BLAST of Lag0000151 vs. NCBI nr
Match: XP_038907230.1 (serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907231.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907232.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907233.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida])

HSP 1 Score: 468.8 bits (1205), Expect = 3.9e-128
Identity = 259/278 (93.17%), Postives = 262/278 (94.24%), Query Frame = 0


Query: 45  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 104
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 105 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGG---GGGGGGGGGRFGVSKRSEYR 164
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGG   GGGGG GGGRFGVSKRSEYR
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGSGGGGGAGGGRFGVSKRSEYR 120

Query: 165 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDDTE 224
           VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFG+VDYTNYDDMKYA+RKLDDTE
Sbjct: 121 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTE 180

Query: 225 FRNPWARAYIRVKKYDGSPARSRSRSRSRSRSRSRSRSRSRSRSRS------ARRNRSKS 284
           FRNPWARAYIRVKKYDGSP RSRSRSRSRSRSRSRSRSRSRSRSRS      ARRNRSKS
Sbjct: 181 FRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRPARRNRSKS 240

Query: 285 AERSVSRSVSRSRSRSRSPSPVKSSRPRSKSRSASPRE 314
           AERSVSRSV    SRSRSPSPVKSSRPRSKSRS SPR+
Sbjct: 241 AERSVSRSV----SRSRSPSPVKSSRPRSKSRSGSPRQ 274

[Close]

BLAST of Lag0000151 vs. NCBI nr
Match: XP_022137780.1 (serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137781.1 serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137782.1 serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137783.1 serine/arginine-rich splicing factor SR34A [Momordica charantia])

HSP 1 Score: 459.5 bits (1181), Expect = 2.3e-125
Identity = 253/278 (91.01%), Postives = 259/278 (93.17%), Query Frame = 0


Query: 45  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 104
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 105 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY---------GGGGGGGGGGGRFGVS 164
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY         GGGGGGGGGGGRFGVS
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGRFGVS 120

Query: 165 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIR 224
           KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD+EGTFG+VDYTNYDDMKYAIR
Sbjct: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAIR 180

Query: 225 KLDDTEFRNPWARAYIRVKKYDGSPARSRSRSRSRSRSRSRSRSRSRSRSRSARRNRSKS 284
           KLDDTEF+NPWARAYIRVKKYDGSP    +RSRSRSRSRSRSRSRS+SRSRSARRNRSKS
Sbjct: 181 KLDDTEFKNPWARAYIRVKKYDGSP----TRSRSRSRSRSRSRSRSQSRSRSARRNRSKS 240

Query: 285 AERSVSRSVSRSRSRSRSPSPVKSSRPRSKSRSASPRE 314
            ERSVSRSV    SRSRSPSPVKSSRPRSKSRS SPRE
Sbjct: 241 VERSVSRSV----SRSRSPSPVKSSRPRSKSRSGSPRE 270

[Close]

BLAST of Lag0000151 vs. NCBI nr
Match: XP_011654574.2 (serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654575.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654577.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654579.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654580.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654581.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_031741184.1 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_031741186.1 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >KAE8647793.1 hypothetical protein Csa_000628 [Cucumis sativus])

HSP 1 Score: 456.4 bits (1173), Expect = 2.0e-124
Identity = 258/300 (86.00%), Postives = 262/300 (87.33%), Query Frame = 0


Query: 45  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 104
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 105 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGG---------------------- 164
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGG                      
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR 120

Query: 165 -----GGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 224
                GGGG GGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG
Sbjct: 121 RRRRRGGGGRGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 180

Query: 225 TFGVVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPARSRSRSRSRSRSRSRS 284
           TFG+VDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSP RSRSRSRSRSRSRSRS
Sbjct: 181 TFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS 240

Query: 285 RSRSRSRSRS----ARRNRSKSAERSVSRSVSRSRSRSRSPSPVKSSRPRSKSRSASPRE 314
           RSRSRSRSRS    ARRNRSKSAER   RSVSRS SRSRSPSP+KSSRPRSKSRS SPR+
Sbjct: 241 RSRSRSRSRSRSRTARRNRSKSAER---RSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQ 297

[Close]

BLAST of Lag0000151 vs. NCBI nr
Match: XP_023533518.1 (serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 446.4 bits (1147), Expect = 2.1e-121
Identity = 247/271 (91.14%), Postives = 254/271 (93.73%), Query Frame = 0


Query: 45  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 104
           MSSRFSRTIYVGNLPSDI+E EIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 105 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYG--GGGGGGGGGGRFGVSKRSEYRV 164
           AIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+YG  GGGGGGGGGGRFGVSKRSEYRV
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGGGGGGGGGGRFGVSKRSEYRV 120

Query: 165 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDDTEF 224
           IVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDDMKYAIRKLDDTEF
Sbjct: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEF 180

Query: 225 RNPWARAYIRVKKYDGSPARSRSRSRSRSRSRSRSRSRSRSRSRSARRNRSKSAERSVSR 284
           +NPWARAYIRVKKY+GSP  +R RSR+RSRSRSRSRSRSRSRSRSARRNRSKSAE+SVSR
Sbjct: 181 KNPWARAYIRVKKYEGSP--TRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSAEQSVSR 240

Query: 285 SVSRSRSRSRSPSPVKSSRPRSKSRSASPRE 314
           SVSRSRS     SPVKSSR RSKSRS SPRE
Sbjct: 241 SVSRSRSL----SPVKSSRRRSKSRSGSPRE 265

[Close]

BLAST of Lag0000151 vs. NCBI nr
Match: XP_022996414.1 (serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996415.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996416.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996417.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima])

HSP 1 Score: 445.7 bits (1145), Expect = 3.5e-121
Identity = 244/269 (90.71%), Postives = 251/269 (93.31%), Query Frame = 0


Query: 45  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 104
           MSSRFSRTIYVGNLPSDI+E EIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 105 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGRFGVSKRSEYRVIV 164
           AIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+Y   GG GGGGGRFGVSKRSEYRVIV
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY---GGSGGGGGRFGVSKRSEYRVIV 120

Query: 165 RGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDDTEFRN 224
           RGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDDMKYAIRKLDDTEF+N
Sbjct: 121 RGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKN 180

Query: 225 PWARAYIRVKKYDGSPARSRSRSRSRSRSRSRSRSRSRSRSRSARRNRSKSAERSVSRSV 284
           PWARAYIRVKKY+GSP R RSR+RSRSRSRSRSRSRSRSRSRSA+RNRSKSAE+SVSRSV
Sbjct: 181 PWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSRSAKRNRSKSAEQSVSRSV 240

Query: 285 SRSRSRSRSPSPVKSSRPRSKSRSASPRE 314
           SRSRS     SPVKSSR RSKSRS SPRE
Sbjct: 241 SRSRSL----SPVKSSRRRSKSRSGSPRE 262

[Close]

BLAST of Lag0000151 vs. ExPASy Swiss-Prot
Match: A2RVS6 (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 2.8e-105
Identity = 218/283 (77.03%), Postives = 239/283 (84.45%), Query Frame = 0


Query: 45  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 104
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 105 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGG----GGGGGGGG--RFGVSKRS 164
           AI+ RDGYN DGCRLRVELAHGGRG SSSDRR  YGGG    GGGGGGGG  RFGVS+ S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 165 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLD 224
           E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+GVVDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 225 DTEFRNPWARAYIRVKKYDGSPARSR--SRSRSRSRSRSRSRSRSRSRSRSARRNRSKSA 284
           DTEFRNPWAR +IRVKKY+ S +RSR  SRSRSRSRSRSRSR R RS SRS   +RSKS 
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 285 ERSVS----RSVSRSRSRSRSPSPVKSSRP-----RSKSRSAS 311
            + +S    RS+SRS S+SRSPSP K   P     RSKSRS S
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRS 283

[Close]

BLAST of Lag0000151 vs. ExPASy Swiss-Prot
Match: O22315 (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.7e-81
Identity = 183/280 (65.36%), Postives = 218/280 (77.86%), Query Frame = 0


Query: 45  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 104
           MSSR SRT+YVGNLP DI+E E+EDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 105 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGG----GGGGRFGVSKRSEY 164
           AI  RDGY+FDG RLRVELAHGGR  SS D R S+ GGG GG    G GG  G S+RSE+
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 165 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDDT 224
           RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT GVVDYT Y+DMKYA++KLDDT
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 225 EFRNPWARAYIRVKKYDG-----SPARSRSRSRSRSRSRSRSRSRSRSRSRSARRN-RSK 284
           EFRN ++  Y+RV++YD      SP+R RS S+SRSRSR RS SRSRSRSRS  R+ ++K
Sbjct: 181 EFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAK 240

Query: 285 SAERSVSRSVSRS---RSRSRSPSPVKSSRPRSKSRSASP 312
           S+ RS ++S SRS   RS+SRSPSP    R RS+SRS  P
Sbjct: 241 SSRRSPAKSTSRSPGPRSKSRSPSP---RRSRSRSRSPLP 276

[Close]

BLAST of Lag0000151 vs. ExPASy Swiss-Prot
Match: F4JHI7 (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 2.5e-77
Identity = 179/279 (64.16%), Postives = 207/279 (74.19%), Query Frame = 0


Query: 45  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 104
           MSSR SRTIYVGNLP DI+E E+EDLF KYG ++ I+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 105 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY-----GGGGGGGGGGGRFGVSKRSE 164
           AI  RDGY+FDG  LRVELAHGGR  SS D R SY     GG GGG GGG   G S+RSE
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGR-RSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSE 120

Query: 165 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDD 224
           YRV+V GLPSSASWQDLKDHMRK G+VCF++V RD  GT G+VDYT+Y+DMKYA   LDD
Sbjct: 121 YRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDD 180

Query: 225 TEFRNPWARAYIRVKKYDG-----SPARSRSRSRSRSRSRSRSRSRSRSRSRSARRN-RS 284
           TEFRN ++  Y+RV++YD      SP+R RS S+SRSR RS SRSRSRSRSRS  R+ ++
Sbjct: 181 TEFRNAFSHEYVRVREYDSRRDSRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKA 240

Query: 285 KSAERSVSRSVSRSRSRSRSPSPVKSSRPRSKSRSASPR 313
           KS  RS ++S SRS            SR RSKSRS SPR
Sbjct: 241 KSLRRSPAKSTSRS----------PRSRSRSKSRSLSPR 265

[Close]

BLAST of Lag0000151 vs. ExPASy Swiss-Prot
Match: Q9XFR5 (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 4.5e-71
Identity = 175/276 (63.41%), Postives = 201/276 (72.83%), Query Frame = 0


Query: 45  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 104
           MSSR++RTIYVGNLP DI++ E+EDLFYKYG I+DI+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 105 AIRARDGYNFDGCRLRVELAHGGR--GPSSSDRRSSYGGGGGGGGGGGRFGVSKRSEYRV 164
           AI  RDGY+FDGCRLRVE+AHGGR   PS     SSY               S+RS+YRV
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASR---------APSRRSDYRV 120

Query: 165 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDDTEF 224
           +V GLP SASWQDLKDHMRKAGDVCF+EV  D +G  GVVDY+NYDDMKYAIRKLD TEF
Sbjct: 121 LVTGLPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEF 180

Query: 225 RNPWARAYIRVKKYDG-----SPARSRS-RSRSRSR-------SRSRSRSRSRS---RSR 284
           RN ++ AYIRV++Y+      SP  S+S RSRSRSR       S+SRS S +RS   RSR
Sbjct: 181 RNAFSSAYIRVREYESRSVSRSPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSR 240

Query: 285 SARRNRS--KSAERSVSRSVSRSRSRSRSP-SPVKS 300
              R+RS   S  RS SRS SRSRSRS SP SPV S
Sbjct: 241 PLSRSRSLYSSVSRSQSRSKSRSRSRSNSPVSPVIS 267

[Close]

BLAST of Lag0000151 vs. ExPASy Swiss-Prot
Match: Q7SXP4 (Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV=2)

HSP 1 Score: 223.8 bits (569), Expect = 2.8e-57
Identity = 152/250 (60.80%), Postives = 177/250 (70.80%), Query Frame = 0


Query: 53  IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGY 112
           IYVGNLP DI+  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ ARDGY
Sbjct: 17  IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76

Query: 113 NFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGG-----GRFG-VSKRSEYRVIVRG 172
           ++DG RLRVE    GRG          GGGGGGGGGG     GR+G  S+RSEYRVIV G
Sbjct: 77  DYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSG 136

Query: 173 LPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDDTEFR-NP 232
           LP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   +DM YA+RKLD+T+FR + 
Sbjct: 137 LPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRSHE 196

Query: 233 WARAYIRVKKYDG--SPARSRSRSRSRSRSRSRSRSRSRSRSRSARRNRSKSAERSVSRS 292
              AYIRV K DG  SP+  RSRSRSRSRSRSRSRS +RSRS S RR+R      S   S
Sbjct: 197 GETAYIRV-KVDGPRSPSYGRSRSRSRSRSRSRSRSNNRSRSYSPRRSRG-----SPQYS 256

Query: 293 VSRSRSRSRS 294
              SRSRSRS
Sbjct: 257 PRHSRSRSRS 257

[Close]

BLAST of Lag0000151 vs. ExPASy TrEMBL
Match: A0A0A0KLR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.8e-126
Identity = 256/281 (91.10%), Postives = 262/281 (93.24%), Query Frame = 0


Query: 45  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 104
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 105 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY------------GGGGGGGGGGGRF 164
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY            GGGGGGGGGGGRF
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120

Query: 165 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKY 224
           GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFG+VDYTNYDDMKY
Sbjct: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180

Query: 225 AIRKLDDTEFRNPWARAYIRVKKYDGSPARSRSRSRSRSRSRSRSRSRSRSRSRSARRNR 284
           AIRKLDDTEFRNPWARAYIRVKKYDGSP  +RSRSRSRSRSRSRSRSRSRSRSR+ARRNR
Sbjct: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSP--TRSRSRSRSRSRSRSRSRSRSRSRTARRNR 240

Query: 285 SKSAERSVSRSVSRSRSRSRSPSPVKSSRPRSKSRSASPRE 314
           SKSAER   RSVSRS SRSRSPSP+KSSRPRSKSRS SPR+
Sbjct: 241 SKSAER---RSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQ 276

[Close]

BLAST of Lag0000151 vs. ExPASy TrEMBL
Match: A0A6J1C7M8 (serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC111009138 PE=4 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 1.1e-125
Identity = 253/278 (91.01%), Postives = 259/278 (93.17%), Query Frame = 0


Query: 45  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 104
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 105 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY---------GGGGGGGGGGGRFGVS 164
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY         GGGGGGGGGGGRFGVS
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGRFGVS 120

Query: 165 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIR 224
           KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD+EGTFG+VDYTNYDDMKYAIR
Sbjct: 121 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAIR 180

Query: 225 KLDDTEFRNPWARAYIRVKKYDGSPARSRSRSRSRSRSRSRSRSRSRSRSRSARRNRSKS 284
           KLDDTEF+NPWARAYIRVKKYDGSP    +RSRSRSRSRSRSRSRS+SRSRSARRNRSKS
Sbjct: 181 KLDDTEFKNPWARAYIRVKKYDGSP----TRSRSRSRSRSRSRSRSQSRSRSARRNRSKS 240

Query: 285 AERSVSRSVSRSRSRSRSPSPVKSSRPRSKSRSASPRE 314
            ERSVSRSV    SRSRSPSPVKSSRPRSKSRS SPRE
Sbjct: 241 VERSVSRSV----SRSRSPSPVKSSRPRSKSRSGSPRE 270

[Close]

BLAST of Lag0000151 vs. ExPASy TrEMBL
Match: A0A6J1K1U7 (serine/arginine-rich splicing factor SR34A-like OS=Cucurbita maxima OX=3661 GN=LOC111491646 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.7e-121
Identity = 244/269 (90.71%), Postives = 251/269 (93.31%), Query Frame = 0


Query: 45  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 104
           MSSRFSRTIYVGNLPSDI+E EIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 105 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGRFGVSKRSEYRVIV 164
           AIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+Y   GG GGGGGRFGVSKRSEYRVIV
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY---GGSGGGGGRFGVSKRSEYRVIV 120

Query: 165 RGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDDTEFRN 224
           RGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDDMKYAIRKLDDTEF+N
Sbjct: 121 RGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAIRKLDDTEFKN 180

Query: 225 PWARAYIRVKKYDGSPARSRSRSRSRSRSRSRSRSRSRSRSRSARRNRSKSAERSVSRSV 284
           PWARAYIRVKKY+GSP R RSR+RSRSRSRSRSRSRSRSRSRSA+RNRSKSAE+SVSRSV
Sbjct: 181 PWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSRSAKRNRSKSAEQSVSRSV 240

Query: 285 SRSRSRSRSPSPVKSSRPRSKSRSASPRE 314
           SRSRS     SPVKSSR RSKSRS SPRE
Sbjct: 241 SRSRSL----SPVKSSRRRSKSRSGSPRE 262

[Close]

BLAST of Lag0000151 vs. ExPASy TrEMBL
Match: A0A6J1IHC8 (serine/arginine-rich splicing factor SR34A-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111472973 PE=4 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 1.2e-119
Identity = 248/276 (89.86%), Postives = 253/276 (91.67%), Query Frame = 0


Query: 45  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 104
           MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 105 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY-GGGGGGGGGGGRFGVSKRSEYRVI 164
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY GGGGGGGGGGGRFGVSKRSEYRVI
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGRFGVSKRSEYRVI 120

Query: 165 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDDTEFR 224
           VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDDTEFR
Sbjct: 121 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDDTEFR 180

Query: 225 NPWARAYIRVKKYDGSPARSRSRSRSR-SRSRSRSRSRSRSRSRSARRNRSKSAERSVSR 284
           NPWAR YIRVKKYDGSP RSRSRSRSR SRSRSRSRSRSRSRSRS  R+RS+S  RS SR
Sbjct: 181 NPWARGYIRVKKYDGSPTRSRSRSRSRSSRSRSRSRSRSRSRSRSRGRDRSRSRNRSQSR 240

Query: 285 SVSRSRSRSRSPSPVKS-------SRPRSKSRSASP 312
           S SRSRSRSRS  P +S       SR  S+SRS SP
Sbjct: 241 SRSRSRSRSRSARPNRSKSAERSVSRSVSRSRSPSP 276

[Close]

BLAST of Lag0000151 vs. ExPASy TrEMBL
Match: A0A6J1IFY5 (serine/arginine-rich splicing factor SR34A-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111472973 PE=4 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 1.6e-119
Identity = 248/277 (89.53%), Postives = 253/277 (91.34%), Query Frame = 0


Query: 45  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 104
           MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 105 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY--GGGGGGGGGGGRFGVSKRSEYRV 164
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY  GGGGGGGGGGGRFGVSKRSEYRV
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGRFGVSKRSEYRV 120

Query: 165 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDDTEF 224
           IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDDTEF
Sbjct: 121 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDDTEF 180

Query: 225 RNPWARAYIRVKKYDGSPARSRSRSRSR-SRSRSRSRSRSRSRSRSARRNRSKSAERSVS 284
           RNPWAR YIRVKKYDGSP RSRSRSRSR SRSRSRSRSRSRSRSRS  R+RS+S  RS S
Sbjct: 181 RNPWARGYIRVKKYDGSPTRSRSRSRSRSSRSRSRSRSRSRSRSRSRGRDRSRSRNRSQS 240

Query: 285 RSVSRSRSRSRSPSPVKS-------SRPRSKSRSASP 312
           RS SRSRSRSRS  P +S       SR  S+SRS SP
Sbjct: 241 RSRSRSRSRSRSARPNRSKSAERSVSRSVSRSRSPSP 277

[Close]

BLAST of Lag0000151 vs. TAIR 10
Match: AT3G49430.1 (SER/ARG-rich protein 34A )

HSP 1 Score: 383.3 bits (983), Expect = 2.0e-106
Identity = 218/283 (77.03%), Postives = 239/283 (84.45%), Query Frame = 0


Query: 45  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 104
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 105 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGG----GGGGGGGG--RFGVSKRS 164
           AI+ RDGYN DGCRLRVELAHGGRG SSSDRR  YGGG    GGGGGGGG  RFGVS+ S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 165 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLD 224
           E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+GVVDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 225 DTEFRNPWARAYIRVKKYDGSPARSR--SRSRSRSRSRSRSRSRSRSRSRSARRNRSKSA 284
           DTEFRNPWAR +IRVKKY+ S +RSR  SRSRSRSRSRSRSR R RS SRS   +RSKS 
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 285 ERSVS----RSVSRSRSRSRSPSPVKSSRP-----RSKSRSAS 311
            + +S    RS+SRS S+SRSPSP K   P     RSKSRS S
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRS 283

[Close]

BLAST of Lag0000151 vs. TAIR 10
Match: AT3G49430.3 (SER/ARG-rich protein 34A )

HSP 1 Score: 383.3 bits (983), Expect = 2.0e-106
Identity = 218/283 (77.03%), Postives = 239/283 (84.45%), Query Frame = 0


Query: 45  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 104
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 105 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGG----GGGGGGGG--RFGVSKRS 164
           AI+ RDGYN DGCRLRVELAHGGRG SSSDRR  YGGG    GGGGGGGG  RFGVS+ S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 165 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLD 224
           E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+GVVDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 225 DTEFRNPWARAYIRVKKYDGSPARSR--SRSRSRSRSRSRSRSRSRSRSRSARRNRSKSA 284
           DTEFRNPWAR +IRVKKY+ S +RSR  SRSRSRSRSRSRSR R RS SRS   +RSKS 
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 285 ERSVS----RSVSRSRSRSRSPSPVKSSRP-----RSKSRSAS 311
            + +S    RS+SRS S+SRSPSP K   P     RSKSRS S
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRS 283

[Close]

BLAST of Lag0000151 vs. TAIR 10
Match: AT3G49430.2 (SER/ARG-rich protein 34A )

HSP 1 Score: 379.8 bits (974), Expect = 2.2e-105
Identity = 211/270 (78.15%), Postives = 232/270 (85.93%), Query Frame = 0


Query: 45  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 104
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 105 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGG----GGGGGGGG--RFGVSKRS 164
           AI+ RDGYN DGCRLRVELAHGGRG SSSDRR  YGGG    GGGGGGGG  RFGVS+ S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 165 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLD 224
           E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+GVVDYTNYDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 225 DTEFRNPWARAYIRVKKYDGSPARSR--SRSRSRSRSRSRSRSRSRSRSRSARRNRSKSA 284
           DTEFRNPWAR +IRVKKY+ S +RSR  SRSRSRSRSRSRSR R RS SRS   +RSKS 
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 285 ERSVS----RSVSRSRSRSRSPSPVKSSRP 303
            + +S    RS+SRS S+SRSPSP K   P
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDKKKSP 270

[Close]

BLAST of Lag0000151 vs. TAIR 10
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 304.3 bits (778), Expect = 1.2e-82
Identity = 183/280 (65.36%), Postives = 218/280 (77.86%), Query Frame = 0


Query: 45  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 104
           MSSR SRT+YVGNLP DI+E E+EDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 105 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGG----GGGGRFGVSKRSEY 164
           AI  RDGY+FDG RLRVELAHGGR  SS D R S+ GGG GG    G GG  G S+RSE+
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 165 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDDT 224
           RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT GVVDYT Y+DMKYA++KLDDT
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 225 EFRNPWARAYIRVKKYDG-----SPARSRSRSRSRSRSRSRSRSRSRSRSRSARRN-RSK 284
           EFRN ++  Y+RV++YD      SP+R RS S+SRSRSR RS SRSRSRSRS  R+ ++K
Sbjct: 181 EFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAK 240

Query: 285 SAERSVSRSVSRS---RSRSRSPSPVKSSRPRSKSRSASP 312
           S+ RS ++S SRS   RS+SRSPSP    R RS+SRS  P
Sbjct: 241 SSRRSPAKSTSRSPGPRSKSRSPSP---RRSRSRSRSPLP 276

[Close]

BLAST of Lag0000151 vs. TAIR 10
Match: AT1G02840.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 304.3 bits (778), Expect = 1.2e-82
Identity = 183/280 (65.36%), Postives = 218/280 (77.86%), Query Frame = 0


Query: 45  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 104
           MSSR SRT+YVGNLP DI+E E+EDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 105 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGG----GGGGRFGVSKRSEY 164
           AI  RDGY+FDG RLRVELAHGGR  SS D R S+ GGG GG    G GG  G S+RSE+
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 165 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDDT 224
           RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT GVVDYT Y+DMKYA++KLDDT
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 225 EFRNPWARAYIRVKKYDG-----SPARSRSRSRSRSRSRSRSRSRSRSRSRSARRN-RSK 284
           EFRN ++  Y+RV++YD      SP+R RS S+SRSRSR RS SRSRSRSRS  R+ ++K
Sbjct: 181 EFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAK 240

Query: 285 SAERSVSRSVSRS---RSRSRSPSPVKSSRPRSKSRSASP 312
           S+ RS ++S SRS   RS+SRSPSP    R RS+SRS  P
Sbjct: 241 SSRRSPAKSTSRSPGPRSKSRSPSP---RRSRSRSRSPLP 276

The following BLAST results are available for this feature:

BLAST of Lag0000151 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038907230.1	3.9e-128	93.17	serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907231.1 s...	[more]
XP_022137780.1	2.3e-125	91.01	serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137781.1...	[more]
XP_011654574.2	2.0e-124	86.00	serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654575.2 ser...	[more]
XP_023533518.1	2.1e-121	91.14	serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp...	[more]
XP_022996414.1	3.5e-121	90.71	serine/arginine-rich splicing factor SR34A-like [Cucurbita maxima] >XP_022996415...	[more]

BLAST of Lag0000151 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVS6	2.8e-105	77.03	Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
O22315	1.7e-81	65.36	Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
F4JHI7	2.5e-77	64.16	Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q9XFR5	4.5e-71	63.41	Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
Q7SXP4	2.8e-57	60.80	Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV...	[more]

BLAST of Lag0000151 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLR9	1.8e-126	91.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1	[more]
A0A6J1C7M8	1.1e-125	91.01	serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1K1U7	1.7e-121	90.71	serine/arginine-rich splicing factor SR34A-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IHC8	1.2e-119	89.86	serine/arginine-rich splicing factor SR34A-like isoform X4 OS=Cucurbita maxima O...	[more]
A0A6J1IFY5	1.6e-119	89.53	serine/arginine-rich splicing factor SR34A-like isoform X3 OS=Cucurbita maxima O...	[more]

BLAST of Lag0000151 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49430.1	2.0e-106	77.03	SER/ARG-rich protein 34A	[more]
AT3G49430.3	2.0e-106	77.03	SER/ARG-rich protein 34A	[more]
AT3G49430.2	2.2e-105	78.15	SER/ARG-rich protein 34A	[more]
AT1G02840.1	1.2e-82	65.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G02840.3	1.2e-82	65.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 52..122 e-value: 2.0E-22 score: 90.5 coord: 161..230 e-value: 3.0E-7 score: 40.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 53..120 e-value: 2.1E-18 score: 65.9 coord: 162..224 e-value: 5.8E-12 score: 45.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 51..126 score: 16.61952
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 160..238 score: 10.172579
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 43..155 e-value: 1.2E-27 score: 98.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 159..237 e-value: 5.8E-24 score: 85.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 237..311
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 285..311
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 270..284
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..269
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..152
None	No IPR available	PANTHER	PTHR23147:SF63	SERINE/ARGININE-RICH SPLICING FACTOR SR34A	coord: 46..313
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 46..313
None	No IPR available	CDD	cd12599	RRM1_SF2_plant_like	coord: 52..123 e-value: 1.04804E-43 score: 142.599
None	No IPR available	CDD	cd12602	RRM2_SF2_plant_like	coord: 160..235 e-value: 2.60676E-44 score: 144.572
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 50..230

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000151.1	Lag0000151.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding