Lag0000134 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000134
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Senescence-associated protein
Location	chr4: 264846 .. 265205 (-)
RNA-Seq Expression	Lag0000134
Synteny	Lag0000134

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCATAGTAGAGAATTGATATCGTTGGATCCCGAGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCCTACATTGTTCCATCGACCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGGGAGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCGCACCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCTGAGCCGTTTCCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAA

mRNA sequence

ATGCGTCATAGTAGAGAATTGATATCGTTGGATCCCGAGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCCTACATTGTTCCATCGACCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGGGAGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCGCACCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCTGAGCCGTTTCCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAA

Coding sequence (CDS)

ATGCGTCATAGTAGAGAATTGATATCGTTGGATCCCGAGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCCTACATTGTTCCATCGACCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGGGAGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCGCACCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCTGAGCCGTTTCCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAA

Protein sequence

MRHSRELISLDPEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSRFQGGQAVKQKR

Homology

[Close]

BLAST of Lag0000134 vs. NCBI nr
Match: KAF3437851.1 (hypothetical protein FNV43_RR20607 [Rhamnella rubrinervis])

HSP 1 Score: 151.4 bits (381), Expect = 5.0e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 49  AYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSR 108
           AYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSR
Sbjct: 237 AYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSR 296

Query: 109 FQGGQAVKQKR 120
           FQGGQAVKQKR
Sbjct: 297 FQGGQAVKQKR 307

[Close]

BLAST of Lag0000134 vs. NCBI nr
Match: KAF7807769.1 (Regulator of rDNA transcription protein 15 [Senna tora])

HSP 1 Score: 151.4 bits (381), Expect = 5.0e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 49  AYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSR 108
           AYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSR
Sbjct: 399 AYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSR 458

Query: 109 FQGGQAVKQKR 120
           FQGGQAVKQKR
Sbjct: 459 FQGGQAVKQKR 469

[Close]

BLAST of Lag0000134 vs. NCBI nr
Match: KAF3951939.1 (hypothetical protein CMV_022458 [Castanea mollissima])

HSP 1 Score: 151.4 bits (381), Expect = 5.0e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 49  AYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSR 108
           AYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSR
Sbjct: 394 AYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSR 453

Query: 109 FQGGQAVKQKR 120
           FQGGQAVKQKR
Sbjct: 454 FQGGQAVKQKR 464

[Close]

BLAST of Lag0000134 vs. NCBI nr
Match: KAF3969133.1 (hypothetical protein CMV_007045 [Castanea mollissima])

HSP 1 Score: 151.4 bits (381), Expect = 5.0e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 49  AYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSR 108
           AYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSR
Sbjct: 311 AYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSR 370

Query: 109 FQGGQAVKQKR 120
           FQGGQAVKQKR
Sbjct: 371 FQGGQAVKQKR 381

[Close]

BLAST of Lag0000134 vs. NCBI nr
Match: KAF1855332.1 (hypothetical protein Lal_00048028 [Lupinus albus])

HSP 1 Score: 151.4 bits (381), Expect = 5.0e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 49  AYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSR 108
           AYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSR
Sbjct: 251 AYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSR 310

Query: 109 FQGGQAVKQKR 120
           FQGGQAVKQKR
Sbjct: 311 FQGGQAVKQKR 321

The following BLAST results are available for this feature:

BLAST of Lag0000134 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3437851.1	5.0e-33	100.00	hypothetical protein FNV43_RR20607 [Rhamnella rubrinervis]	[more]
KAF7807769.1	5.0e-33	100.00	Regulator of rDNA transcription protein 15 [Senna tora]	[more]
KAF3951939.1	5.0e-33	100.00	hypothetical protein CMV_022458 [Castanea mollissima]	[more]
KAF3969133.1	5.0e-33	100.00	hypothetical protein CMV_007045 [Castanea mollissima]	[more]
KAF1855332.1	5.0e-33	100.00	hypothetical protein Lal_00048028 [Lupinus albus]	[more]

BLAST of Lag0000134 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33047	PROTEIN TAR1	coord: 14..81
None	No IPR available	PANTHER	PTHR33047:SF22	SENESCENCE-ASSOCIATED PROTEIN	coord: 14..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000134.1	Lag0000134.1	mRNA