Lag0000132 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000132
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Regulator of rDNA transcription protein 15
Location	chr4: 254809 .. 256124 (-)
RNA-Seq Expression	Lag0000132
Synteny	Lag0000132

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCCGCCGAGGCAGGCCTTGGGACCAAAAAGAGGGGCAGTGCCCCGCTTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCTTTCGGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTTACATGGAATCAAAAAAAAATTCATCCAATTTGGTCAACCGAGCTAAAAGTTATGGCCTTTCAAAGTTTCAACTTAAATACGACTAGTTTTTGGAGGTATTAGAGGTACAAATCCGTTAACAATTTACTCAATTTATGAGTTTGGGTGTATAGAACACGAAAAAACGTATAAAATCAAGTGGTCATTTAGCTAAAACAAGTCTGAATCGAATGAGTTATGCTGATCGAAAGATTTACCTTCTGGTGTACGAATTTCTGTTCGAATGGATCTGGGAAGAGCATGGATTTAAATTATATACTGTATCTTAACTATATATAATATCTGAAATCACTTAGGCTCATAATTCTTAAGCGGTCCGTTTGGTGTGCCGTTTCGTTTTGCATACTCAAGGACAAGGGTTCGAACCTTGCTTAACTTAATGTTCTTTTTCGTTTTTTTTTTACGCTTTTTCATTATTTGCTTTCCTTCTTTTCGGCGCGCAAAAACGCTATTTGGCCTTTTCATTTTCGAACCTCTTTCTCAAAAACGCACAAAAAAAACGCTATTTGGTTCGAACCTCTTTCATTTTCGAGTCACACAGACAAAGCTTCGTTTTTTTAACAGATTCTTCATCTTCTTTCTCAAGAAAAGAAAAAGAAGATGCAAAAGCTTTCGCACTTACTCGCCTATGGAGCTTTCGTTGCTGAGTATGTGAAGACGTGGCTCGTGTGTCAAATCCTCGGCCTCCTGAGATTTCTTTTGTAGCGGAAAAATTCACAGCATCCATGGCTGGAAACGGCTCGTTCGATTGGGCGGACAAGTGGGACTACAGCGACTCGAAGGACGTAGTCACCCACAACAATAACAAGTAG

mRNA sequence

ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCCGCCGAGGCAGGCCTTGGGACCAAAAAGAGGGGCAGTGCCCCGCTTCCGATTCACGGAATAAACGTGGCTCGTGTGTCAAATCCTCGGCCTCCTGAGATTTCTTTTGTAGCGGAAAAATTCACAGCATCCATGGCTGGAAACGGCTCGTTCGATTGGGCGGACAAGTGGGACTACAGCGACTCGAAGGACGTAGTCACCCACAACAATAACAAGTAG

Coding sequence (CDS)

ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCCGCCGAGGCAGGCCTTGGGACCAAAAAGAGGGGCAGTGCCCCGCTTCCGATTCACGGAATAAACGTGGCTCGTGTGTCAAATCCTCGGCCTCCTGAGATTTCTTTTGTAGCGGAAAAATTCACAGCATCCATGGCTGGAAACGGCTCGTTCGATTGGGCGGACAAGTGGGACTACAGCGACTCGAAGGACGTAGTCACCCACAACAATAACAAGTAG

Protein sequence

MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAEAGLGTKKRGSAPLPIHGINVARVSNPRPPEISFVAEKFTASMAGNGSFDWADKWDYSDSKDVVTHNNNK

Homology

[Close]

BLAST of Lag0000132 vs. NCBI nr
Match: XP_022973211.1 (uncharacterized protein LOC111471770, partial [Cucurbita maxima] >XP_022975378.1 uncharacterized protein LOC111474635, partial [Cucurbita maxima] >XP_022975495.1 uncharacterized protein LOC111474884, partial [Cucurbita maxima] >XP_022975523.1 uncharacterized protein LOC111474999, partial [Cucurbita maxima] >XP_022975528.1 uncharacterized protein LOC111475008, partial [Cucurbita maxima] >XP_022975557.1 uncharacterized protein LOC111475089, partial [Cucurbita maxima])

HSP 1 Score: 261.5 bits (667), Expect = 5.1e-66
Identity = 125/127 (98.43%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQ 60
           MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQ
Sbjct: 30  MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQ 89

Query: 61  TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAEAGLGTKKRGSAP 120
           TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAEAGLG+KKRGSAP
Sbjct: 90  TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAEAGLGSKKRGSAP 149

Query: 121 LPIHGIN 128
           LPIHGI+
Sbjct: 150 LPIHGIS 156

[Close]

BLAST of Lag0000132 vs. NCBI nr
Match: XP_022975571.1 (uncharacterized protein LOC111475116, partial [Cucurbita maxima])

HSP 1 Score: 261.5 bits (667), Expect = 5.1e-66
Identity = 125/127 (98.43%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQ 60
           MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQ
Sbjct: 30  MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQ 89

Query: 61  TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAEAGLGTKKRGSAP 120
           TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAEAGLG+KKRGSAP
Sbjct: 90  TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAEAGLGSKKRGSAP 149

Query: 121 LPIHGIN 128
           LPIHGI+
Sbjct: 150 LPIHGIS 156

[Close]

BLAST of Lag0000132 vs. NCBI nr
Match: TKY45733.1 (putative ART2 [Spatholobus suberectus])

HSP 1 Score: 260.4 bits (664), Expect = 1.1e-65
Identity = 125/135 (92.59%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQ 60
           MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRR+KGSIGHAFTVRIRTGNQNQ
Sbjct: 1   MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRTKGSIGHAFTVRIRTGNQNQ 60

Query: 61  TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAEAGLGTKKRGSAP 120
           TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAEAGLG+KKRGSAP
Sbjct: 61  TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAEAGLGSKKRGSAP 120

Query: 121 LPIHGINVARVSNPR 136
            PIHGI ++R+ + R
Sbjct: 121 PPIHGIILSRLFDAR 135

[Close]

BLAST of Lag0000132 vs. NCBI nr
Match: KAG4108959.1 (hypothetical protein GLYMA_U009702v4 [Glycine max])

HSP 1 Score: 260.0 bits (663), Expect = 1.5e-65
Identity = 125/134 (93.28%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQ 60
           MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRR+KGSIGHAFTVRIRTGNQNQ
Sbjct: 1   MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRTKGSIGHAFTVRIRTGNQNQ 60

Query: 61  TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAEAGLGTKKRGSAP 120
           TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAEA LG+KKRGSAP
Sbjct: 61  TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAEADLGSKKRGSAP 120

Query: 121 LPIHGINVARVSNP 135
           LPIHGI+    S+P
Sbjct: 121 LPIHGISKITSSSP 134

[Close]

BLAST of Lag0000132 vs. NCBI nr
Match: XP_024924841.1 (uncharacterized protein LOC112489922 [Ziziphus jujuba])

HSP 1 Score: 259.6 bits (662), Expect = 1.9e-65
Identity = 124/127 (97.64%), Postives = 126/127 (99.21%), Query Frame = 0


Query: 1   MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQ 60
           MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQ
Sbjct: 1   MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQ 60

Query: 61  TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRPAEAGLGTKKRGSAP 120
           TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVF PDRPAEAGLG+KKRGSAP
Sbjct: 61  TSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFHPDRPAEAGLGSKKRGSAP 120

Query: 121 LPIHGIN 128
           LPIHGI+
Sbjct: 121 LPIHGIS 127

[Close]

BLAST of Lag0000132 vs. ExPASy Swiss-Prot
Match: Q8TGM7 (Putative uncharacterized protein ART2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ART2 PE=5 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-16
Identity = 43/56 (76.79%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 51  VRIRTGNQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDRP 107
           V I T NQNQ  FYPFV  EISVL E  LGHLRY LTDVPPQPNSPPDNVF PD+P
Sbjct: 2   VCIHTENQNQGGFYPFVLLEISVLHEPPLGHLRYRLTDVPPQPNSPPDNVFNPDQP 57

[Close]

BLAST of Lag0000132 vs. ExPASy Swiss-Prot
Match: Q3E811 (Regulator of rDNA transcription protein 15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RRT15 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.3e-11
Identity = 35/46 (76.09%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 51 VRIRTGNQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSP 97
          V I T NQNQ  FYPFV  EISVL E  LGHLRY LTDVPPQPNSP
Sbjct: 2  VCIHTENQNQGDFYPFVLLEISVLHESPLGHLRYRLTDVPPQPNSP 47

The following BLAST results are available for this feature:

BLAST of Lag0000132 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022973211.1	5.1e-66	98.43	uncharacterized protein LOC111471770, partial [Cucurbita maxima] >XP_022975378.1...	[more]
XP_022975571.1	5.1e-66	98.43	uncharacterized protein LOC111475116, partial [Cucurbita maxima]	[more]
TKY45733.1	1.1e-65	92.59	putative ART2 [Spatholobus suberectus]	[more]
KAG4108959.1	1.5e-65	93.28	hypothetical protein GLYMA_U009702v4 [Glycine max]	[more]
XP_024924841.1	1.9e-65	97.64	uncharacterized protein LOC112489922 [Ziziphus jujuba]	[more]

BLAST of Lag0000132 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8TGM7	3.0e-16	76.79	Putative uncharacterized protein ART2 OS=Saccharomyces cerevisiae (strain ATCC 2...	[more]
Q3E811	8.3e-11	76.09	Regulator of rDNA transcription protein 15 OS=Saccharomyces cerevisiae (strain A...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..116
None	No IPR available	PANTHER	PTHR33047	PROTEIN TAR1	coord: 1..126
None	No IPR available	PANTHER	PTHR33047:SF22	SENESCENCE-ASSOCIATED PROTEIN	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000132.1	Lag0000132.1	mRNA