Lag0000129 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000129
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr4: 197986 .. 199422 (-)
RNA-Seq Expression	Lag0000129
Synteny	Lag0000129

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCCTAGGAAAATTCCTAGGAGGTCACTTAACATAGAACTTCTCCAAGCCACGCTTAACTTCAAAGTTCCTATGATTGAGCCATCAAAAAGAAAGGTGCACCTTGTTGGTATAGGTAGTATCTATCAATTCTTTTAAACTTATCTTGACCATACTTTCATGTCCTCAGGATCCCTCTCATTCGAATGTGATCTCGGTTCATTCATCTTCTAACCTCAGGCGTCACATGAAGGTTCAAGGGTCTTATGCAAGACCAATTTGTTTGATGCTTCCCTAGTGCTGAAGTTGAAGATCTAGAAGCAGAGTTTTTGTTGCTTGTGCAGGGGAGCATGTCTGTAGTGCAGTATGAAAGAAGATTTGTGGAGTTGTCTCGCCGTGTCCCTGAGCTAGTCGCCACCGAGCCAAGAAGGTTCAAAAGGTTCATCAATGTCCTGCATAGGGAAATAGGAGAGTTGGTCAGGCTAGGATGACCAACCACTTATGCAGCAGCTTTTGCAAGCGCAATAGTGTGGGACACTGAAGTTCCCAGGATGGAGTAGTCCCAAGAGGTGGGCACTTTATCTGGTGTCAAGCGTAAGCATGAAAAGTTGGATCTTGCATCTGGTCATCAAGATCAAAGGTTTCTGCCAGGATCAAAGCTCAGCGAGTTCGTTGTAAGGGAAGCCAAAATCTTGAAGAGTTCAAAGGTTCCCTCTAGAAGCGAACCAAAAGACGTCAAGCAAGAGGAGCTGATGTCTTGATTTCTGATGAGGAACTTAAGGTCGAGTATCTAGAGCTCTATGATGACGAATCTAAAGAAGAGGAAAGTCCCTAAAGGTGAGGAGTCGGTTTCACCTATTGTTCCCAGGTTAGTGCTCTTTCCTCGAATCTATCTATTGCTTCGGAATTTCCTTTCTTCTTGCAAAGCTTTGTCATCTGAATCTTTGTGTGATGCAAGCTCCTAGTCTTGCTTTGATATGATCTAGTTGCATTGGTTAGATCTTCATTCCCTATGAAGTTAGTGGAAGCTAGTAAGGTTGTTTCCAGGTGATGCGAATTGTAGACTGAAGGTGGATGTTGGAAAAGATGGTAAATAATGAATAAGAATGAATTCAGTCAACCAAGTGCAAGTATACACTATCACATGTAGTAATAAAAACTCTAGAAGTACTCCAAAGGTATTGTAACGTCGGGAATTTTAGGAAAAAAAAAGGAAAAGAAAGTTTAGCCTCATCCTCACATTTTTCCTCCAGCCGCATTTTTCCTTCTTCCTTGCGTCTCTCAGCCCCCACCAGCTCTCTCTCCCATTTTTCTCTCTCTCGCTCACGTCACACCAGCCGCCCCTCCGAGCAACGATCTCAGCCCCGCATCGCCGCCGTAAGTCATGCCATCGCGCCTTCTGAACTTCGTGCACCGTTGTCGTTGAGCGTCTGTTGTAGGTCGCTACCGTCGTGA

mRNA sequence

ATGCTTCCTAGGAAAATTCCTAGGAGGTCACTTAACATAGAACTTCTCCAAGCCACGCTTAACTTCAAAGTTCCTATGATTGAGCCATCAAAAAGAAAGGATCCCTCTCATTCGAATGTGATCTCGGTTCATTCATCTTCTAACCTCAGGCGTCACATGAAGGGGAGCATGTCTGTAGTGCAGTATGAAAGAAGATTTGTGGAGTTGTCTCGCCGTGTCCCTGAGCTAGTCGCCACCGAGCCAAGAAGGTTCAAAAGGTTCATCAATGTCCTGCATAGGGAAATAGGAGAGTTGTCCCAAGAGGTGGGCACTTTATCTGGTGTCAAGCGTAAGCATGAAAAGTTGGATCTTGCATCTGGTCATCAAGATCAAAGGTTTCTGCCAGGATCAAAGCTCAGCGAGTTCGTTGTAAGGGAAGCCAAAATCTTGAAGAGTTCAAAGAGCTCTATGATGACGAATCTAAAGAAGAGGAAAGTCCCTAAAGGTGAGGAGTCGGTTTCACCTATTGTTCCCAGATCTTCATTCCCTATGAAGTTAGTGGAAGCTAGTAAGGTTGTTTCCAGCCGCATTTTTCCTTCTTCCTTGCGTCTCTCAGCCCCCACCAGCTCTCTCTCCCATTTTTCTCTCTCTCGCTCACGTCACACCAGCCGCCCCTCCGAGCAACGATCTCAGCCCCGCATCGCCGCCGTAAGTCATGCCATCGCGCCTTCTGAACTTCGTGCACCGTTGTCGTTGAGCGTCTGTTGTAGGTCGCTACCGTCGTGA

Coding sequence (CDS)

ATGCTTCCTAGGAAAATTCCTAGGAGGTCACTTAACATAGAACTTCTCCAAGCCACGCTTAACTTCAAAGTTCCTATGATTGAGCCATCAAAAAGAAAGGATCCCTCTCATTCGAATGTGATCTCGGTTCATTCATCTTCTAACCTCAGGCGTCACATGAAGGGGAGCATGTCTGTAGTGCAGTATGAAAGAAGATTTGTGGAGTTGTCTCGCCGTGTCCCTGAGCTAGTCGCCACCGAGCCAAGAAGGTTCAAAAGGTTCATCAATGTCCTGCATAGGGAAATAGGAGAGTTGTCCCAAGAGGTGGGCACTTTATCTGGTGTCAAGCGTAAGCATGAAAAGTTGGATCTTGCATCTGGTCATCAAGATCAAAGGTTTCTGCCAGGATCAAAGCTCAGCGAGTTCGTTGTAAGGGAAGCCAAAATCTTGAAGAGTTCAAAGAGCTCTATGATGACGAATCTAAAGAAGAGGAAAGTCCCTAAAGGTGAGGAGTCGGTTTCACCTATTGTTCCCAGATCTTCATTCCCTATGAAGTTAGTGGAAGCTAGTAAGGTTGTTTCCAGCCGCATTTTTCCTTCTTCCTTGCGTCTCTCAGCCCCCACCAGCTCTCTCTCCCATTTTTCTCTCTCTCGCTCACGTCACACCAGCCGCCCCTCCGAGCAACGATCTCAGCCCCGCATCGCCGCCGTAAGTCATGCCATCGCGCCTTCTGAACTTCGTGCACCGTTGTCGTTGAGCGTCTGTTGTAGGTCGCTACCGTCGTGA

Protein sequence

MLPRKIPRRSLNIELLQATLNFKVPMIEPSKRKDPSHSNVISVHSSSNLRRHMKGSMSVVQYERRFVELSRRVPELVATEPRRFKRFINVLHREIGELSQEVGTLSGVKRKHEKLDLASGHQDQRFLPGSKLSEFVVREAKILKSSKSSMMTNLKKRKVPKGEESVSPIVPRSSFPMKLVEASKVVSSRIFPSSLRLSAPTSSLSHFSLSRSRHTSRPSEQRSQPRIAAVSHAIAPSELRAPLSLSVCCRSLPS

Homology

[Close]

BLAST of Lag0000129 vs. NCBI nr
Match: XP_027184054.1 (uncharacterized protein LOC113782360 [Coffea eugenioides])

HSP 1 Score: 56.6 bits (135), Expect = 3.6e-04
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 54  KGSMSVVQYERRFVELSRRVPELVATEPRRFKRFINVLHREIGE--LSQEVGTLSGVKRK 113
           +G MSV +YE +F +LS+  PEL+ATEPR+ +RFI  L+ E+ E   + ++ T + V  K
Sbjct: 119 QGMMSVTEYETQFTKLSKFAPELIATEPRKVRRFIQGLNVELQEALAAAQINTFTEVLEK 178

Query: 114 HEKLDLASGH 122
            ++++ A  H
Sbjct: 179 AQRIETARAH 188

[Close]

BLAST of Lag0000129 vs. NCBI nr
Match: XP_027151841.1 (uncharacterized protein LOC113751894 [Coffea eugenioides])

HSP 1 Score: 56.6 bits (135), Expect = 3.6e-04
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 54  KGSMSVVQYERRFVELSRRVPELVATEPRRFKRFINVLHREIGE--LSQEVGTLSGVKRK 113
           +G MSV +YE +F +LS+  PEL+ATEPR+ +RFI  L+ E+ E   + ++ T + V  K
Sbjct: 119 QGMMSVTEYETQFTKLSKFAPELIATEPRKVRRFIQGLNVELQEALAAAQINTFTEVLEK 178

Query: 114 HEKLDLASGH 122
            ++++ A  H
Sbjct: 179 AQRIETARAH 188

[Close]

BLAST of Lag0000129 vs. NCBI nr
Match: XP_027151842.1 (uncharacterized protein LOC113751895 [Coffea eugenioides] >XP_027155246.1 uncharacterized protein LOC113755441 [Coffea eugenioides] >XP_027155247.1 uncharacterized protein LOC113755442 [Coffea eugenioides] >XP_027184053.1 uncharacterized protein LOC113782359 [Coffea eugenioides])

HSP 1 Score: 56.6 bits (135), Expect = 3.6e-04
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 54  KGSMSVVQYERRFVELSRRVPELVATEPRRFKRFINVLHREIGE--LSQEVGTLSGVKRK 113
           +G MSV +YE +F +LS+  PEL+ATEPR+ +RFI  L+ E+ E   + ++ T + V  K
Sbjct: 119 QGMMSVTEYETQFTKLSKFAPELIATEPRKVRRFIQGLNVELQEALAAAQINTFTEVLEK 178

Query: 114 HEKLDLASGH 122
            ++++ A  H
Sbjct: 179 AQRIETARAH 188

[Close]

BLAST of Lag0000129 vs. NCBI nr
Match: XP_027157100.1 (uncharacterized protein LOC113758442 [Coffea eugenioides] >XP_027157101.1 uncharacterized protein LOC113758443 [Coffea eugenioides])

HSP 1 Score: 55.8 bits (133), Expect = 6.1e-04
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 54  KGSMSVVQYERRFVELSRRVPELVATEPRRFKRFINVLHREIGE--LSQEVGTLSGVKRK 113
           +G MSV +YE +F +LS+  PEL+ATEPR+ +RFI  L+ E+ E   + ++ T + V  K
Sbjct: 138 QGMMSVTEYETQFTKLSKFAPELIATEPRKVRRFIQGLNVELQEALAAAQINTFTEVLEK 197

Query: 114 HEKLDLASGH 122
            ++++ A  H
Sbjct: 198 AQRIETARTH 207

The following BLAST results are available for this feature:

BLAST of Lag0000129 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_027184054.1	3.6e-04	40.00	uncharacterized protein LOC113782360 [Coffea eugenioides]	[more]
XP_027151841.1	3.6e-04	40.00	uncharacterized protein LOC113751894 [Coffea eugenioides]	[more]
XP_027151842.1	3.6e-04	40.00	uncharacterized protein LOC113751895 [Coffea eugenioides] >XP_027155246.1 unchar...	[more]
XP_027157100.1	6.1e-04	40.00	uncharacterized protein LOC113758442 [Coffea eugenioides] >XP_027157101.1 unchar...	[more]

BLAST of Lag0000129 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0000129 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0000129 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..226

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000129.1	Lag0000129.1	mRNA