IVF0027049 (gene) Melon (IVF77) v1

Overview


Name	IVF0027049
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	60S ribosomal protein L44
Location	chr04: 22593839 .. 22596288 (-)
RNA-Seq Expression	IVF0027049
Synteny	IVF0027049

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTAAATTAGGGTTTCTGGAGCAGGCCTCGTCGACGTCCAGCCGTCATGGTACTTCTTCTCTTTCTCTGTTTTTCTGAAATTTCAATCTCTCTTACTTCTTGTCGTGATTCCCTATGTGTTCCACTTGCCTGATTTATTTCACTATTCGTTCTATTTGGTTGCGTCAATTAGTTCTGTGATGGAGAGGCTAATAGCTGTAGTTACGTGCCTTTTGTTTTTTCGTAGTATCACTTGATCTAGGACTGTGTTAGAATTAAACTGGTTTATCTGTTGTACTCGAGCTTAGCTTGGATTAGTTAGCGAGGTGAGAACGTGAGTTCTGTGGGGCGTTGTAGAATAAGCCATCTAAATCATATGGCAGTTTGTGCGCGATCACGTCGATTTGGAAGTATTTTTGTTGCAGACTGTAAGAGAATGAATTGAAGGATTACTGATATTTGTAACTTATGGAAACTGGGTCCTGGATTTAGGATATGCACGATTGCTGCATGCGAGTGAAATATGTAGTGTCACTGAACTCGTAATGTTTTTTCGGATAAGGAACAGTTTCGTTGATGTTTGAAATTATAAGAGGGGAACTCCGATACGAGTAATTACAGAAGGCTTCTCCAATAAGAGGAAGGAGGAATAATTATAGTGATGGCACTGAACTTTTGAACGCTTTAATATTGAGTGGGATTGGGATGTTTCATCAAAAAATTGCTTAAAAGAAGACTTTTCACGAGGTAAACATTGCTCGTGGAGTGTGATTTTAAATTCTGGAGCTTTGGTTATAGTCTAAGAAGCACAGACACTTCAGTTTGGATAGTGTGTCCATGTTCGACAGGACACTCGTTAAGTAGACTAAAAAGACACGTACATGATAATAATAATAACTTTTGAGCATGGAATACATCAAGCTAAGTCTTTTAAGCATATAAATGCATCGACTCATTTACTAAGAATTTTCTTTTACTATAAAATGATATATATATATTTTAAAAATGAATGTTTTAATAATAGTGTTATTGTTGTGTCTTGTCCTAGATTTTTAAAATATGGTGTGTCGCTGTGTCTCGTATCTGTGTCATATTCGTGTCTCGTATCTGTGTCATGTCGTATTCGTGTCTCGTATCCATGTTCGTGCTTCTTAGGTTATAGTAAGTTTGTGGTTGTGCCCTGCTAAAGAAAATTTTAAACCATGGATTCAAGAGGCAGTACTGGGATTGTAGTATCTGTGTGTCTTTTGTCATTACAGCTTGTAGCGTTGTGGCTTAAGACTTGATTTGTTGATATGGTTATGGCAAACAGGTGAACGTTCCCAAGACCAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGGAAGCATACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTAGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGTTAGTTAATTTTCTCACGTCCAGTCAAATTCTTACTTTCTCTATTTTCGAGGTTCTATTTAGATTAGAACTTTATTGAAACTCCTGAATCTCACAGGCAAAAACGACCAAGAAGATTGTGTTGAGGCTTCAGTGCCAAGGTTGCAAACACGTATCCCAGCACCCTATCAAGGTCAGAATGCAAAGTATTTTGTTCTTTTTTTTTTTTTTTTTTTCCGTTTAAGACCTCTCTCAATTAAGTATCTTGATCATTTTGCAAAAAATCTTTCAAACATATAGAACCGTTCTCATACTATCTAAGGCTGTTGGTTCAAACAATGTTAATACGTCTTCTTTCCCGCAAAGAAAATACCCATTGCTACACTAGTGAAGGAAGTTCATACTTGATACCTGGTTTTAAATGCCTTTACCTTTGGGATAGTATTGTTTTCTCCATTCCGGTACTTGGGTATAGTTTTGTAATGAGCATTGAATTGGTACATGGTGAGAAAATTGCGATATTTTGAAGTAATTGCTTACTATTTAAGACAAGATGCAAGTCCAAATGGGAAACCTAACTGTTAGATATTATGTGGTGTGGATATTGTGCGCTTTCCTTATCGTTATATGTCTTAATTGTCGAATGCAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACTTCTCTTTTCTAGACCCTTTGATCAGTTTTTTATCTTTTGTCACAAGATTATTTGTTATTGGAGTTGTTGGAGAATTGCTTTGTTTTGGTTCAGCAATTAGATCTACATGTCGCAACGATACTTTTTAGCTGAAACTTTCTTATCTTAATTATTGAATTCCCAAAATTTTGATGCTCTTTGATTGATTTATCTGAGTCTTCTCTTATAAATTTGTTTGGCCGCTGAATCTGATTGGTCGGTGCCTCTCAAGTTAATTTGATATATTGTTGTTAGATTTGTGACAAACTTTGTATCTTCTAAAT

mRNA sequence

CACTAAATTAGGGTTTCTGGAGCAGGCCTCGTCGACGTCCAGCCGTCATGGTGAACGTTCCCAAGACCAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGGAAGCATACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTAGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGCAAAAACGACCAAGAAGATTGTGTTGAGGCTTCAGTGCCAAGGTTGCAAACACGTATCCCAGCACCCTATCAAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACTTCTCTTTTCTAGACCCTTTGATCAGTTTTTTATCTTTTGTCACAAGATTATTTGTTATTGGAGTTGTTGGAGAATTGCTTTGTTTTGGTTCAGCAATTAGATCTACATGTCGCAACGATACTTTTTAGCTGAAACTTTCTTATCTTAATTATTGAATTCCCAAAATTTTGATGCTCTTTGATTGATTTATCTGAGTCTTCTCTTATAAATTTGTTTGGCCGCTGAATCTGATTGGTCGGTGCCTCTCAAGTTAATTTGATATATTGTTGTTAGATTTGTGACAAACTTTGTATCTTCTAAAT

Coding sequence (CDS)

ATGGTGAACGTTCCCAAGACCAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGGAAGCATACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTAGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGCAAAAACGACCAAGAAGATTGTGTTGAGGCTTCAGTGCCAAGGTTGCAAACACGTATCCCAGCACCCTATCAAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACTTCTCTTTTCTAG

Protein sequence

MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF

Homology

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BLAST of IVF0027049 vs. ExPASy Swiss-Prot
Match: Q96499 (60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 218.4 bits (555), Expect = 3.9e-56
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

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BLAST of IVF0027049 vs. ExPASy Swiss-Prot
Match: O23290 (60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3)

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-52
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

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BLAST of IVF0027049 vs. ExPASy Swiss-Prot
Match: O59870 (60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 174.1 bits (440), Expect = 8.4e-43
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 105
           KAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG ++
Sbjct: 61  KAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104

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BLAST of IVF0027049 vs. ExPASy Swiss-Prot
Match: P0CQ51 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.4e-42
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 105
           KAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G ++
Sbjct: 61  KAKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

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BLAST of IVF0027049 vs. ExPASy Swiss-Prot
Match: P0CQ50 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.4e-42
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 105
           KAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G ++
Sbjct: 61  KAKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

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BLAST of IVF0027049 vs. ExPASy TrEMBL
Match: A0A059AD57 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02575 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.4e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of IVF0027049 vs. ExPASy TrEMBL
Match: A0A1U8KM57 (60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=LOC107918511 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.4e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of IVF0027049 vs. ExPASy TrEMBL
Match: A0A5D2E9A1 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A03G203000v1 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.4e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of IVF0027049 vs. ExPASy TrEMBL
Match: A0A0B0MJ69 (60S ribosomal L44 OS=Gossypium arboreum OX=29729 GN=LOC108459374 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.4e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of IVF0027049 vs. ExPASy TrEMBL
Match: A0A5J5SG84 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A04G130000v1 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.4e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of IVF0027049 vs. NCBI nr
Match: XP_002278981.1 (PREDICTED: 60S ribosomal protein L44 [Vitis vinifera] >XP_002512948.1 60S ribosomal protein L44 [Ricinus communis] >XP_002515644.2 60S ribosomal protein L44 [Ricinus communis] >XP_004135958.1 60S ribosomal protein L44 [Cucumis sativus] >XP_004148568.1 60S ribosomal protein L44 [Cucumis sativus] >XP_006442884.1 60S ribosomal protein L44 [Citrus clementina] >XP_006478803.1 60S ribosomal protein L44 [Citrus sinensis] >XP_008461363.1 PREDICTED: 60S ribosomal protein L44 [Cucumis melo] >XP_008461845.1 PREDICTED: 60S ribosomal protein L44 [Cucumis melo] >XP_010031923.1 60S ribosomal protein L44 [Eucalyptus grandis] >XP_010066999.1 60S ribosomal protein L44 [Eucalyptus grandis] >XP_010648481.1 PREDICTED: 60S ribosomal protein L44 isoform X2 [Vitis vinifera] >XP_010648486.1 PREDICTED: 60S ribosomal protein L44 [Vitis vinifera] >XP_012072570.1 60S ribosomal protein L44 [Jatropha curcas] >XP_012438096.1 PREDICTED: 60S ribosomal protein L44 [Gossypium raimondii] >XP_012462607.1 PREDICTED: 60S ribosomal protein L44 [Gossypium raimondii] >XP_015868533.1 60S ribosomal protein L44 [Ziziphus jujuba] >XP_015902130.1 60S ribosomal protein L44 [Ziziphus jujuba] >XP_016666391.1 60S ribosomal protein L44 [Gossypium hirsutum] >XP_016674731.1 60S ribosomal protein L44 [Gossypium hirsutum] >XP_016679916.1 60S ribosomal protein L44 [Gossypium hirsutum] >XP_016703571.1 60S ribosomal protein L44 [Gossypium hirsutum] >XP_016735798.1 60S ribosomal protein L44 [Gossypium hirsutum] >XP_017220899.1 PREDICTED: 60S ribosomal protein L44 [Daucus carota subsp. sativus] >XP_017614223.1 PREDICTED: 60S ribosomal protein L44 [Gossypium arboreum] >XP_017617200.1 PREDICTED: 60S ribosomal protein L44 [Gossypium arboreum] >XP_017632331.1 PREDICTED: 60S ribosomal protein L44 [Gossypium arboreum] >XP_021615025.1 60S ribosomal protein L44 [Manihot esculenta] >XP_021634251.1 60S ribosomal protein L44 [Manihot esculenta] >XP_021655321.1 60S ribosomal protein L44 [Hevea brasiliensis] >XP_021689805.1 60S ribosomal protein L44 [Hevea brasiliensis] >XP_022145128.1 60S ribosomal protein L44 [Momordica charantia] >XP_022153188.1 60S ribosomal protein L44 [Momordica charantia] >XP_022725683.1 60S ribosomal protein L44 [Durio zibethinus] >XP_022743263.1 60S ribosomal protein L44 [Durio zibethinus] >XP_022762471.1 60S ribosomal protein L44 [Durio zibethinus] >XP_022850521.1 60S ribosomal protein L44 [Olea europaea var. sylvestris] >XP_022850524.1 60S ribosomal protein L44 [Olea europaea var. sylvestris] >XP_022863268.1 60S ribosomal protein L44 [Olea europaea var. sylvestris] >XP_022886056.1 60S ribosomal protein L44 [Olea europaea var. sylvestris] >XP_027079523.1 60S ribosomal protein L44 [Coffea arabica] >XP_028058574.1 60S ribosomal protein L44 [Camellia sinensis] >XP_028091556.1 60S ribosomal protein L44 [Camellia sinensis] >XP_028113737.1 60S ribosomal protein L44 [Camellia sinensis] >XP_030448100.1 60S ribosomal protein L44 [Syzygium oleosum] >XP_030456938.1 60S ribosomal protein L44 [Syzygium oleosum] >XP_030526793.1 60S ribosomal protein L44 [Rhodamnia argentea] >XP_030547538.1 60S ribosomal protein L44 [Rhodamnia argentea] >XP_031377256.1 60S ribosomal protein L44 [Punica granatum] >XP_034674208.1 60S ribosomal protein L44 [Vitis riparia] >XP_034703044.1 60S ribosomal protein L44 [Vitis riparia] >XP_038697425.1 60S ribosomal protein L44 [Tripterygium wilfordii] >XP_038701677.1 60S ribosomal protein L44 [Tripterygium wilfordii] >XP_038706111.1 60S ribosomal protein L44 [Tripterygium wilfordii] >XP_038721345.1 60S ribosomal protein L44 [Tripterygium wilfordii] >XP_038898844.1 60S ribosomal protein L44 [Benincasa hispida] >XP_038903595.1 60S ribosomal protein L44 [Benincasa hispida] >XP_038992457.1 60S ribosomal protein L44 [Hibiscus syriacus] >XP_038992458.1 60S ribosomal protein L44 [Hibiscus syriacus] >XP_038995556.1 60S ribosomal protein L44 [Hibiscus syriacus] >XP_038998558.1 60S ribosomal protein L44 [Hibiscus syriacus] >XP_039001768.1 60S ribosomal protein L44 [Hibiscus syriacus] >XP_039004580.1 60S ribosomal protein L44 [Hibiscus syriacus] >XP_039018319.1 60S ribosomal protein L44 [Hibiscus syriacus] >XP_039019477.1 60S ribosomal protein L44 [Hibiscus syriacus] >XP_039040184.1 60S ribosomal protein L44 isoform X2 [Hibiscus syriacus] >XP_039046447.1 60S ribosomal protein L44 [Hibiscus syriacus] >XP_040962785.1 60S ribosomal protein L44 [Gossypium hirsutum] >XP_040967481.1 60S ribosomal protein L44 [Gossypium hirsutum] >XP_042506994.1 60S ribosomal protein L44 [Macadamia integrifolia] >Q96499.3 RecName: Full=60S ribosomal protein L44 [Gossypium hirsutum] >KAA0058576.1 60S ribosomal protein L44-like [Cucumis melo var. makuwa] >KAA3482652.1 60S ribosomal protein L44-like [Gossypium australe] >KAB1993992.1 hypothetical protein ES319_D13G069300v1 [Gossypium barbadense] >KAF7842640.1 60S ribosomal protein L44 [Senna tora] >KAF8033219.1 hypothetical protein BT93_D1968 [Corymbia citriodora subsp. variegata] >KAG5564396.1 hypothetical protein RHGRI_000555 [Rhododendron griersonianum] >KAG8475355.1 hypothetical protein CXB51_032162 [Gossypium anomalum] >MBA0726789.1 hypothetical protein [Gossypium laxum] >OMO60124.1 Ribosomal protein L44e [Corchorus capsularis] >OMO89748.1 Ribosomal protein L44e [Corchorus olitorius] >PIN12620.1 60S ribosomal protein L44 [Handroanthus impetiginosus] >TXG56925.1 hypothetical protein EZV62_018238 [Acer yangbiense] >TYG36541.1 hypothetical protein ES288_D13G073000v1 [Gossypium darwinii] >TYH33632.1 hypothetical protein ES332_D13G072100v1 [Gossypium tomentosum] >TYI45922.1 hypothetical protein E1A91_D13G071400v1 [Gossypium mustelinum] >CAA2977522.1 60S ribosomal L44 [Olea europaea subsp. europaea] >GAY32130.1 hypothetical protein CUMW_273290 [Citrus unshiu])

HSP 1 Score: 217 bits (553), Expect = 2.82e-71
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of IVF0027049 vs. NCBI nr
Match: XP_007148440.1 (hypothetical protein PHAVU_006G208900g [Phaseolus vulgaris] >XP_007159073.1 hypothetical protein PHAVU_002G206100g [Phaseolus vulgaris] >XP_014492317.1 60S ribosomal protein L44 [Vigna radiata var. radiata] >XP_014517837.1 60S ribosomal protein L44 [Vigna radiata var. radiata] >XP_015943530.1 60S ribosomal protein L44 [Arachis duranensis] >XP_015957532.1 60S ribosomal protein L44 [Arachis duranensis] >XP_016182138.1 60S ribosomal protein L44 [Arachis ipaensis] >XP_016190584.1 60S ribosomal protein L44 [Arachis ipaensis] >XP_017425406.1 PREDICTED: 60S ribosomal protein L44 [Vigna angularis] >XP_017435381.1 PREDICTED: 60S ribosomal protein L44 [Vigna angularis] >XP_020222889.1 60S ribosomal protein L44 [Cajanus cajan] >XP_025622382.1 60S ribosomal protein L44 [Arachis hypogaea] >XP_025639594.1 60S ribosomal protein L44 [Arachis hypogaea] >XP_025686071.1 60S ribosomal protein L44 [Arachis hypogaea] >XP_025691242.1 60S ribosomal protein L44 [Arachis hypogaea] >XP_027338998.1 60S ribosomal protein L44 [Abrus precatorius] >XP_027346687.1 60S ribosomal protein L44 [Abrus precatorius] >XP_027917477.1 60S ribosomal protein L44 [Vigna unguiculata] >XP_027930583.1 60S ribosomal protein L44 [Vigna unguiculata] >TKY59532.1 60S ribosomal protein L44 [Spatholobus suberectus] >ESW20434.1 hypothetical protein PHAVU_006G208900g [Phaseolus vulgaris] >ESW31067.1 hypothetical protein PHAVU_002G206100g [Phaseolus vulgaris] >KOM31304.1 hypothetical protein LR48_Vigan01g085900 [Vigna angularis] >QCD84065.1 large subunit ribosomal protein L44e [Vigna unguiculata])

HSP 1 Score: 216 bits (551), Expect = 5.70e-71
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of IVF0027049 vs. NCBI nr
Match: PPD69100.1 (hypothetical protein GOBAR_DD34021 [Gossypium barbadense])

HSP 1 Score: 217 bits (553), Expect = 6.58e-71
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 27  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 86

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 87  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 131

[Close]

BLAST of IVF0027049 vs. NCBI nr
Match: KJB79863.1 (hypothetical protein B456_013G070100 [Gossypium raimondii])

HSP 1 Score: 217 bits (553), Expect = 7.02e-71
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 29  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 88

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 89  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 133

[Close]

BLAST of IVF0027049 vs. NCBI nr
Match: XP_012479828.1 (PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii])

HSP 1 Score: 217 bits (553), Expect = 8.01e-71
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 33  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 92

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 93  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 137

[Close]

BLAST of IVF0027049 vs. TAIR 10
Match: AT3G23390.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 206.5 bits (524), Expect = 1.1e-53
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of IVF0027049 vs. TAIR 10
Match: AT4G14320.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 206.5 bits (524), Expect = 1.1e-53
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of IVF0027049 vs. TAIR 10
Match: AT4G14320.2 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 181.8 bits (460), Expect = 2.8e-46
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
          MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1  MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61 KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI 94
          KAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEI
Sbjct: 61 KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEI 93

The following BLAST results are available for this feature:

BLAST of IVF0027049 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96499	3.9e-56	100.00	60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3	[more]
O23290	1.5e-52	93.33	60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3	[more]
O59870	8.4e-43	77.88	60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3	[more]
P0CQ51	1.4e-42	77.88	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]
P0CQ50	1.4e-42	77.88	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]

BLAST of IVF0027049 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A059AD57	1.4e-53	100.00	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02575 PE=3 SV...	[more]
A0A1U8KM57	1.4e-53	100.00	60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=LOC107918511 PE=3 SV=...	[more]
A0A5D2E9A1	1.4e-53	100.00	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A03G203000v1 PE=...	[more]
A0A0B0MJ69	1.4e-53	100.00	60S ribosomal L44 OS=Gossypium arboreum OX=29729 GN=LOC108459374 PE=3 SV=1	[more]
A0A5J5SG84	1.4e-53	100.00	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A04G130000v1 PE...	[more]

BLAST of IVF0027049 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_002278981.1	2.82e-71	100.00	PREDICTED: 60S ribosomal protein L44 [Vitis vinifera] >XP_002512948.1 60S riboso...	[more]
XP_007148440.1	5.70e-71	99.05	hypothetical protein PHAVU_006G208900g [Phaseolus vulgaris] >XP_007159073.1 hypo...	[more]
PPD69100.1	6.58e-71	100.00	hypothetical protein GOBAR_DD34021 [Gossypium barbadense]	[more]
KJB79863.1	7.02e-71	100.00	hypothetical protein B456_013G070100 [Gossypium raimondii]	[more]
XP_012479828.1	8.01e-71	100.00	PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii]	[more]

BLAST of IVF0027049 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23390.1	1.1e-53	93.33	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.1	1.1e-53	93.33	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.2	2.8e-46	92.47	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.80		coord: 1..105 e-value: 1.0E-51 score: 175.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..57
None	No IPR available	PANTHER	PTHR10369:SF38	60S RIBOSOMAL PROTEIN L44-LIKE	coord: 2..105
IPR000552	Ribosomal protein L44e	PFAM	PF00935	Ribosomal_L44	coord: 19..93 e-value: 7.4E-35 score: 119.3
IPR000552	Ribosomal protein L44e	PANTHER	PTHR10369	60S RIBOSOMAL PROTEIN L36A/L44	coord: 2..105
IPR000552	Ribosomal protein L44e	PROSITE	PS01172	RIBOSOMAL_L44E	coord: 63..74
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 2..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0027049.2	IVF0027049.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome