IVF0027037 (gene) Melon (IVF77) v1

Overview


Name	IVF0027037
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr08: 28264206 .. 28273498 (+)
RNA-Seq Expression	IVF0027037
Synteny	IVF0027037

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAATGTTATTCCAACGAGTGGTGAACGCTCGTCCCATGTCAGAAATCACTGAAAATGTACTTCTAGAAAAGGAAATGGGGTAAGCTTAAGAACTTCTGGTGTTCATCACAAGAAAATACGAAGAAGAATGCCCCGAACTCAGTTTATCTATCTCGAGGTAAAAAGTAATCCTTCGTCGGTTTCTTTATTTTGTATTGGTCATAAGTGTTTGAGCTTCGAAACTCATAGTTCGAGGACTTCAATCAACATTCCTGGCATCGTCGCTCACACATTTTCTCAAAGTATAGGTCAAAAAGCGAGCTCGTTGGAGGGAGAACTAAGGTGCAATACGAAACAATGGAAAAAATGGTCAATGATCTTCCAACTAGTCGTGAATGCTTGTCTGGTGTAAGAAACCACTGGAAATAAATTTTAGCGAAGGAAACGAGCTAAGCTCAAGAACTTCTGGTGTTCGTCCCAAGAAAATGTGAACGAGAATGCCTCTAACTCAGTTTTTCTATCTCGGGGTAAAAAGCGGTGCTTCATTGGTTTATTTGTTTTGTATTAGTCATAAGTAATCAAGCTTCGGGACTAATACTCTGAAGACTTAAGTTTATAATCTTGAAATTTTCCCTTACACATTTTTCCTATGTATACATCGGGAAGCAAGCTCATTGGAGGGAGAACAAAGGTGCAACCCAAAATGATCAAAAAGATGACTTATGCTCTTCCAACGAGTGGCGAACGCTCGTTCGATGTCAGAAACCATTGAAAATGCATTTTAACGAAGGAAAAGGGCTACGCTTGGGAACGTCTGGTATTCGTCCCAAGAAAATGCGAACAAGACATCCCAAGTCTCATTTTTTTATCTCGTGGTAAAAAGAAGTCCTTCAATGGTTTTTTTGTTTTGTATTGGTCATAAGTTTTCCAAGCTTCAGGACTCATACTTCCAGAACTTCAGTCTATACTCCTTCCATCGTCCCTCACACATTTTCTCAAAGTATAGGTCGAGAAGCGAGCTCGTTGGAGAGAGTACTAAGTCGCAACCCAAAACGATCGAAAAGATGGCTAACGCTCTTCTCGATAGAAAAACACATTTTCACGAGGTAAAAAGCGGGCCTTCAACGGTTTCTTTGTTTTGTATTGGTCATAAGTGTTTCGGGCTTTCGGACTCATACTCCGAGGACTTCAATTTACATTCACGGCATCATCCTACACACATTTTTCCAAAGTATAGGCCATTAAGTGAGCTCGTTAGATGGAGAACTAAGGTGCAACCTAGAACGATCGAAAAATGACAAAAGCTCTTCCAACGAATGGTGAACGCTCGTCTGATGTCATAAACCATGAAAAATAAATTTTAGCATAGGAAATGGGCTAAACTCAAGAACTTCTGGTGTGCGTCCCAAGAAAATGCGAACGAGAATGCCTCAGACTCAGTTTTTCTATCTCGGGGTAAAAAGCGGTCCTTCAACGGTTTCTTTGTTTTGTATTTTTCATAAGTGTTTCGAGCTTTAGGACTCATACTGTGATGACTTTAGTCTACATTCTTGACATCGTCCGTCACACATTTTCCCAAAGTATAGGTTTGGAAGCGAGCTCGTTGGAGGGAGAAGTAAGGTGCAACCTGAAACGATCAGAAAGATGACGAATGCTCTTCCAACGAGTGGCAAACGCTTGTCTGTTGTTAGAAACCACTACAAATGCACTTCTAGTAAAGGAAACGGGCTAAGCTAAAGAACGTGATGGAATATTAAATTTGTTTTCTCTGAAATTTTTCTCTTCTTCCCAATGTGGTGAAGATGTTTATTCATACTATAATTTTACAACCGTGTAACTGTTTTAGTTGTAACAACTCTAACAGTTTTTTGTTAGTATCAAGGTGGCCTATTTAGTTACATCAAACCCACCCCACCCAAAATCAACTCGTCTCGGAGTTGAACTAGTCAGCAAGCTGGAACTCATCTGAGGCATGGTAGGTCTTCAAGTCTGCTACGTTAAAAACAGGGCTGATATGTAGGTCGTCGGGCAGTTTAATTCTATAGGCATTATCACCTTATTTTGCTAATATTTTACAAGGCCCAAGCTGTCTGTGTTTTAGTTTATTATACGTCCCTGTTGGAAATTTGTTCTTCTTTAGATGAATCATCACTAGATCTCCCTCATTGAACTTTACTTCCCTTATTTTATTATCTTTATCTTGTTTATAAGATAAAGTAGTATTCTGTAGGTGTTCATGAACTTCTTTGTGCAGACTTTGTATTCTTTCAATCATATTTTCTGCTTCTATGTTGATATTTGAATCAGACGGCAGATTGGCAAGGTCAAAAGTAAGTCAAGGACTTTTAGTGTAAACAATTTCAAAGGGGCATCTGCCGGTTGATCTGTTTTTCATGTTATCGAACGCGAATTCAGCTTGAGCTAGTGCTAGATCCCACTATTTCGGTTTAGAACCACTTAGGCAACAAATTAAATTTCCCAAGGTTCTGTTAGTGACTTCAATTTGGTCGTCTGTTTGTGGGTGTGCTGTAGTACTGAATTTAAGTGTGGTGTCTAGTTTCTTCCACAAGATTCGCCAAAAGTGGCTTAAGAAGTTCACATCCTTGTCTGACACAATAGAGTTAGGTATGCCATGTAGTCATATTATCTCTCGAAAAAAGAGATTAACAATGTAGACAACATCATTAGTCTTCTTGCAGGGTAAAAAATGGGTCATTTTGCTGAATCTGCCAACTACTACCATTACAGCATCATTCTGTTTTTGTGTCTTAGGTAGCCCCAATAAAAAATCTATTGATATGTCCTCCCATATAGACAGAAATTGGCAAAGGGTTGTATAGACCAGCATTGGTAGTGTCCCTTTAGCTGTTTGGCATATGACGCATCATTTCACAAAATTATTTGTCTTTTTGCAATTGTGGCCATAATATCTCGAAGAGAGTATTTCAAGTGTCTTGTCTTGCCCGAAGTGACCAACCAGTCCTCCTGAGGGTGCTGATAATAAATCCCAAGAATGCTATTTCTTCAACACGAAAGATGGATTTCTTGAGGTTGATGTATAGTTCATTTTTTGCCAGCATTTCGAACACTTGATATAGATGTGTATTATGCTCTTCTAGGCATCTGCTAAAAACCAAGATATCATTAAAATAAACAATGACAAATTGATTAAGGAAATGATGAAGTACTTGGTTCATGAGTCTCATGAAGGTGCTAGGAGAGTTGGAGAGTCCAAATGGCATCACAAGCCATTCAAAGAGGCCTTCATTTGTTTTGAATGTTGTCTTCCATTAATCTTCGAGCCTAGTTTTGATCTGGTGATAGCCACTCTTTAGGTCAATTTTAGAAAAAATCCCTGCTCCTCCAAGTTGGTCAAGTAATTCATTTATTCTTGGAATAGGGAACCTGTATTTTACTGTGATTCTGTTGATTGCCTTGTTGTCAATGCACATCCTCCAACTTCCATCTTTCTTTGGTGTTAGTAAGGCAGGGACTGCACATGGGCTTAAGCTTGGTTGGATATGTCCTTTCTTCAGCAATTCTTCTATTGTCTACTATAAAACAACGTATTCTTTTGGGCTCATTCTAAAATGTGACAAATTAGGCAGTGTAGCCGATATTAGTTGGATATTATGCTGAATGTCTCTCAAGGGAGGCAATTCTAATGGTTCTTCAATGATATTCTAAAATTCATCAAATAGCTCCTTCACTTTTTTAGGGATTTCAACAATATGTTCTTCCCCGATTTGATTAGTTAATACTAGCCCCAGAATATCTCCTTCTCGATCTTTAATTAACTTCTTTCCGCTGGTTGTTATGAAGAGGCTGGAGCTTTTCTTATTCATTCCTTCTTCGTTTTTTTTTCAAGGGTTGAAGGATTACCTTTTTATTCATCTAATGGAATTCATGTGCATTTTCCCTCCCCTTATGCAAGGCTCGAGTATCATACTGTCATGGTGTTCCTAAGAGTATATGGCATACATCCATTTTGAGGACGTCACAAACAACTTGGTCTTTATAACTATTGCCAATGGATAATGGAACATAACATATTTCAGATATTTAAGCTTCTCCTCCGTTCTTAAACCAACAAATTTTATAGGGGTTGGGGTGAGCTTCACTTTTAGGATTCAAGGCTGTCACTAATTTTCTTGAAACAAAATTTTCCCTGCTGCCACTGTCTATTATAACATTACAAATTTTCCTTTGAATCGTGCATCTTGTCTTAAATAGACTACGCCTGTGTGGTTGCTGCTATTCTTTTAGGGTGATCAGTATTTTTTGAAGAACACATGACAGGCTGTCTCCTTCATCAGCCTTAATTAATTGTGCTTCTTCCTCTTCTTCATGACTTCCTTGATTTATATCTTCGTTAGCTTCTATTACCACCATTGTTTTACGCTGAGGATAGGAATTTGAGGGATGACCGGCTTGTCCACACCTATAGTAGGTTCCTGAGAAAGGTCTGTTATAGGGATTTCTAGATCTTTTATTAGGTTAAGCTGTCTCTTTTTTGTTGTTCTATTCTTCCTTCTTTTCTGGATATTTATCATTTTCTGCCATTATTTCCTTATTAGTTCCTTGAGGTGCTGAAGTGTTTTTGGATGTGGAATTTTTCCACAATCCTTTTCTTATAAACTTCGATCGGCTTTCTATCATTTCTTTTATTGTTTCTGCATAAGCAATGGCTTCTGATAGCCATTGAAAACGTTGGAGTTTCACTTTCTCCCTTAAGTTCGTTTGTAATCCTCCTGTAAATCTAGCAATCAAATGCTACTCACTTTCCATCAAATTCGTCCGAGCTCCTAATCGGTAGAACTCCTTAATGAATTTTGCTGTTTTTCGGGATCATTGACGGAAACTTTGGTATTATGTAGTTGGGAGGTAAGAACCTTTGCTTCATTAATTTTTCATTTTTTTCCATGACTGAATTGGCTGCCTCCCTTGTTTTTGCTGATTGATTGCTACTTGATCCCACCAGGCTGATGCTCCGCCTTTTAGTTTCAAAGCCACTAAATAAACCTTCTTCTGCTCGGTTGTGCCTATATAATTGAAAAAAATTTAAGTATTCTTTATCCAGTCAAGAAAGGTTTGAATATTTCATTTACTGTCGTATATAGGGAGGTCGATCTTCATTTTATATTCATATGCTTCTACCCTTCGTTCTCTGTAAGGTGCAAATCGATGTCCTCTGTTGTTCATGGTAGCATAACTCTCTACGTCTTCACTCGAGGAACTCCAATCTTGATTATGATTTTGATTTTCTAGCCACTGTTCCTCGCGTCTGTTTCCTCTTCGAAACTGATTTATTCTTTTTTCTTGATGATTTTCTTGATTTGTGTGGCCACCTGGATGTTCTTCACCTCTTCTTCTTTGAGCATCCCATTATTGTAAGTTTGGTCGTCCCTCAACCGGTTGAATTGGAGCTATTACATCTAGCCTTCTGACCACTGCCTCCAAAGTCTCATGAATTCCCTTTAAGGTGTTCTCAACTGACAGCAAGTGTCCAGTTGTCGTTCTTGGAGAGAGGACGGGCGTTTCTCCCGCCTCTTTTTATTTCTTCGCCACTAGAGCTCGGCCGCGTCGATTGGCCATCGGGTCCCAAGTCCGATGATACTCTGATACCTATTTGTAACATTCAAACAGATGGCTAAAGCTCTTCCAACAAGTAGTGAAAGCTCGTCGAGTGTCAGAAACCACTGAGGATGCACTTTCAACGAAGGAAACAGGCTAAGCTCAAGAACTTCTGGTGTTGATTCCAATAAACTGCGAACGAGAATGCTCCGGACTCAGTTTTTCTAACTCGAGGTAAAAAGCAGTCTTTCAACGATTTCTTTGATTTGTATTGGTCATAAGTGTTTGGGGACTCATACTCTATGGACTTTAGCCTTCTTCCAAGGCATCGTCTCTTACATATTTTCCAAAAGTTCGATTGGAGAAAGGACGGGCATTTCTCCCACCTTTTGTTGTTCCTCCGTCGCACCGATTGGCCATTGGGTCACAAGTCTGATGATACTCTGATACCTATTTGTAACAATCGAACAGATGGCCAAAGCTCTTCCAGCGAGTAGTAAAAGCTCGTCGGGTGTTAGAAACCACTGAGAATGCACTTCCAATGAAGGAAACAGGCTAAGCTCAAGAACTTCTATTCTTGATTCCAATAAAATGCGAACGAGAATGCTCCAAACTCAATTTTTCTATCTCGAGGTAAAAAGCGGTCTTTCAACGATTTCTTTGGTTTGTATTGGTCACAAGTGTTTCGGAACTCATACACTATGAACTTCAGCCTTCTTCCAAGGCATCGTCTCTTGCATATTTTCCCAAAGTAAAGGTCAGGAAGCAAGTTCGTTGGAGGGAGAACTAATATGCAACCCGAAACAATCAAAGAGATGGCCAATGCTCTTCCAACTAGTGGTGAATGCTCATTCGATGTCAGAAAACACTGAAGATGCACTTGCACCAAAGAAAATGGGCTAAGCTCAAGAACTTATGCTATTCGTTTCAAGAAAATGTGAACAAGAATACCTCAAACTCAGTTTTTCTATCTCGGGGTAAAAAACGGTCCTTCAACAGTTTCTTTGTTTTTTGTTGGCCATAAGTTGTTTCGGTTTCGGGACTCATACTCTGAAGACATCAGTCTACATTGATGGCATCGTCCCTTACACATTTTCCTAAAGTAAAGGTCAGGAACCGAGCTTGTTAGAGAAATAACTAATTTGCAACCCGAAACGATCGAAAAGATGGCCAATGATCTTCCAATGAGTGGCGAATGCACATCTGGTGTCAAAAACCACTTAAATTCTCTTCCAGTGAAGGAAACAACCTAAGCAAAGAACTTCTGGTCTTCGTCCCAAGAAAATGCGATCGAGAATGCCGCAGACTCTGTTTTTCTAACTAAGTGTAAAAAGCGGTCCTTCAACGGTTCCTTTTTTTTGTATTGGTCATAAGTGTTTTGACCTCGTGACTTCTATTCCAAAGACTTCAGTTCACATTCCTGGCATCGTCCCTCAAACATTTTCTCAAAGTATAGGTCAGGTAGTGGGTTCATTGGAGGGGGAACTATGGTGCAATCCGAAACGAAAGAAAAGATGGCCAATACTCTACCAACGAGTGTTGAATGCTCGTTCCGTGTTAGAAACCACTGGAAATGCAGTTAAGCAAAGGAAACGAACTAAGCTCAAGAACTTCTGGTTTTCTTCCAAGGAAAATGCGAACAAGAATGCCCCGAACTCAGTTTTTCTTTCTTGGGGTAAAAAGTTGTTCTTGAACGGTTTTTATTTGTTTTGTATTGGTCATAAGTGTTTCAAGCTTCGAGACACATACTCCGATGAATTCAGTCTACATTTCTGGCAACATCCCTCACATATTTTCCTAAAATATAGGTCAAGAAGCGAGCTCATTGGACGAAGAACTAAGGTATAACCCGGAATGATGGAAAAGATGGCCAATGCTCTTCCAATGAGTGGCGAATGCTCGTCCGAGAAATAGGAATGAGAATGCCCCAGCTAATGCTCTTCCAACAGAATGATTGAAACTGCACTTCCAATATAATGATTGAAAATGCACTTCCAACAAAGGAAACACTCTAAGGTCAATAACTAATGTTGTTTGTCCCAGGAAATGGGAACGAGAATGCCTCGGACTTAGGTTTTCAATCTCGTGGTATAAAACGTTCCTTCAACAATTTCTTTATTTTGTATTGCTCATAAGTGTTTCGAGCTTCATGGCTCTTACTCTGAGGACATCAGTCTACATTCCTGGCATCGTCCCTCACAAATTTTCCAAAGTATAGGTCGAGAAGCAAGCTCGATAGAGTGAGAACTAAGGTGCAACCTGAAAAGAACGAAAAGATGGCCACTACTCTTCTAATGAGTGGCGAACGATCGTCCGATGTCAAAAATCATTGAAAATGCATTTTAGCGAATGAAATAGGTTAAGCTCAAGAACTTCTGGTGTTCGTCCCAAGAAATTGCAAAGGAGAATGCCCCGGACTAAGTTTTTCTATCTTCGGGTAAAAAGCGATCTTTCAATGGTTTCTTTGTTTTATACTGGTCATATGTGTTTCAAGCTTCGGGACTCATACTGTGATGATGTTAGACTACATTCCTTGCATCGTACCTCACACATTTTCTCAATGTATAGGTCAGGAAGCCAGCTCGTTAGATGGAGGACTAAGGTGCAACCCAAAACGATAAAAAGATGGCAATACTTTTCCAACGAGTGGCGAACGCTCGTCTGGTGTCAGAAACCACTAAAAATGCATTTCAGTGATGGAAATAGACTAAGCTTAAGAACTTTATGGCGTTCCTATGATGAAAATTCAAACGAAAATGCCTCAGACTCAGTTTTCTATTTCGTGGTAAAAAGCTGACCTTCAATGGTGTCATTGTTTTGTATTGTTATTAAGTGTTTCGAGCTTCTAGACTCATACTTGGAGGATGTCACTCTACATTCCTTGCATCGCCCCTCACATATTCTCCCAAATAATAGGTCAAGAAGCAAGATCGTTGGAGGGGAGAGTTAAGGTGCAACATGAAGCGACCAAACATATGGCCAATGCTCTTCCAACCGAACGGCGAATGCTCGTTCGATGTCAGAAACTACTGAAAATGCATTTCAACAAAGGAAACGGGCTAGACTCAAGAACTTCTAGTGTTCATCCAGGAAAATGTGAACAAGAATGTCCTAGACTCAGTTTTCTATTCAGGATAAAAAGCGGTCCTTCAAAAATTTCTTTATTTTGTATTGGTCATAAGTGTTTCGATCCTTCAGACTCTGACTCTGAGGACGTTAGTGTACATTCCTGGCATCGTCCCTCACACATTTTCCCAAAGTATAGGTCCAAAAGCGAGCTTGTTAGAGGAAGAACAAAGGTGCAACCCGAAACAATCTAAGAGATGGCCAATACTCTTAGTATGATGTCGAACGCTCGTCCGGTGTCAAAAACCATTTAAAATGCACTTCCAGCTAAGGAAACGGGGTAAGCTCAAGAACTTCTGGTGTTCGTCCCAAGAAAATGTGAAGGAGAACGCCCCAAACTCAGTTTAACTATCTCGAGGTAAAAAGCGATCCTTCGTCGGTTTCTTTATTTGAATTGGTTATAAGTGTTTTGAGCTTTCCGACTCGTAGTTCGAGGACTTCAGTTAACATTCTTGGCATCATTGCTCACACATTTCTCCAAGTATAGGTCAAGAAGTGAGCTCGTTGAAGGGAGAACTAAGCTGTAACCCGAAACGATGGAAAAGATGGCCAATGCTCTTCCAACGAGTGGTAAATGCTCGTCCGATGTTAGAAACCATTGAAAATTAA

mRNA sequence

ATGGCCAATGTTATTCCAACGAGTGGTGAACGCTCGTCCCATAAAATGCGAACGAGAATGCCTCAGACTCAGTTTTTCTATCTCGGGGTAAAAAGCGGTCCTTCAACGGTTTCTTTGTTTTGTATTTTTCATAACTTCGGGACTCATACTGTGATGATGTTAGACTACATTCCTTGCATCGTACCTCACACATTTTCTCAATGTATAGGTCAGGAAGCCAGCTCCTCGTTGAAGGGAGAACTAAGCTGTAACCCGAAACGATGGAAAAGATGGCCAATGCTCTTCCAACGAGTGGTAAATGCTCGTCCGATGTTAGAAACCATTGAAAATTAA

Coding sequence (CDS)

ATGGCCAATGTTATTCCAACGAGTGGTGAACGCTCGTCCCATAAAATGCGAACGAGAATGCCTCAGACTCAGTTTTTCTATCTCGGGGTAAAAAGCGGTCCTTCAACGGTTTCTTTGTTTTGTATTTTTCATAACTTCGGGACTCATACTGTGATGATGTTAGACTACATTCCTTGCATCGTACCTCACACATTTTCTCAATGTATAGGTCAGGAAGCCAGCTCCTCGTTGAAGGGAGAACTAAGCTGTAACCCGAAACGATGGAAAAGATGGCCAATGCTCTTCCAACGAGTGGTAAATGCTCGTCCGATGTTAGAAACCATTGAAAATTAA

Protein sequence

MANVIPTSGERSSHKMRTRMPQTQFFYLGVKSGPSTVSLFCIFHNFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQRVVNARPMLETIEN

Homology

[Close]

BLAST of IVF0027037 vs. ExPASy TrEMBL
Match: A0A5A7VEB1 (Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00210 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 8.0e-23
Identity = 61/101 (60.40%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 15   KMRTRMPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCI 74
            K+RTRMP TQFFYLGVK+GP+ VS FC+       +F THT+    YIP IV H+FSQ I
Sbjct: 1140 KVRTRMPWTQFFYLGVKNGPTMVSWFCVVLVISASSFRTHTLRTSVYIPGIVRHSFSQSI 1199

Query: 75   GQEASSSLKGELSCNPKRWKRWPMLFQRVVNARPMLETIEN 111
            G+EA SS KGE  CNPKR K WP+LFQRV NARP+   I++
Sbjct: 1200 GREA-SSFKGEQRCNPKRSKIWPILFQRVANARPVSGMIKH 1239

[Close]

BLAST of IVF0027037 vs. ExPASy TrEMBL
Match: A0A5D3CUK8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00690 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.8e-22
Identity = 61/100 (61.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 15  KMRTRMPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCI 74
           KMR RMP TQFF+ GVK+ P+TVSLFC+       NFGTHT     YI  IVPH F Q I
Sbjct: 238 KMRARMPWTQFFHRGVKNSPTTVSLFCVVLVIGASNFGTHTPRTSVYILGIVPHLFFQSI 297

Query: 75  GQEASSSLKGELSCNPKRWKRWPMLFQRVVNARPMLETIE 110
            ++A SSL+GEL C+PKR KRWPMLFQRV NA  + ET E
Sbjct: 298 CRDA-SSLEGELRCHPKRSKRWPMLFQRVTNAHLVSETTE 336

[Close]

BLAST of IVF0027037 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 50/84 (59.52%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 20 MPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCIGQEAS 79
          MPQTQFF+ G+KSG +TVSLFC+       +F TH +    YIP IVPH FSQ I QE  
Sbjct: 1  MPQTQFFHRGLKSGLATVSLFCVMLVISASSFETHALRSSFYIPRIVPHLFSQSIVQEV- 60

Query: 80 SSLKGELSCNPKRWKRWPMLFQRV 99
          S L GEL CN +R KRW MLFQRV
Sbjct: 61 SLLGGELRCNLERPKRWLMLFQRV 83

[Close]

BLAST of IVF0027037 vs. ExPASy TrEMBL
Match: A0A5A7U7P6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004060 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-13
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 45  NFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQRVVNARPM 104
           +FGTHT     YIP IVP TFSQ IG +A SSL+ EL CNPKR KRWP+ FQRV NAR +
Sbjct: 371 SFGTHTPRTSVYIPGIVPRTFSQSIGWQA-SSLEEELKCNPKRSKRWPLRFQRVGNARIV 430

Query: 105 LETIEN 111
           LET EN
Sbjct: 431 LETTEN 435

[Close]

BLAST of IVF0027037 vs. ExPASy TrEMBL
Match: A0A5D3CV18 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00790 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-08
Identity = 47/96 (48.96%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 7   TSGERSSHKMRTRMPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIV 66
           TSG R   K+R RM +TQFF  GVK  P+  SLFC+       +F THT   L YIP IV
Sbjct: 238 TSGVR-PRKVRARMLRTQFFNHGVKDHPTPDSLFCVLLVKSTSSFRTHTSRTLVYIPGIV 297

Query: 67  PHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQR 98
           PH FSQ  G EA S L+GEL  N +    W  +F R
Sbjct: 298 PHPFSQSKGWEA-SLLEGELR-NVRARMPWTQIFHR 330

[Close]

BLAST of IVF0027037 vs. NCBI nr
Match: KAA0065520.1 (retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (288), Expect = 3.61e-27
Identity = 61/101 (60.40%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 15   KMRTRMPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCI 74
            K+RTRMP TQFFYLGVK+GP+ VS FC+       +F THT+    YIP IV H+FSQ I
Sbjct: 1140 KVRTRMPWTQFFYLGVKNGPTMVSWFCVVLVISASSFRTHTLRTSVYIPGIVRHSFSQSI 1199

Query: 75   GQEASSSLKGELSCNPKRWKRWPMLFQRVVNARPMLETIEN 110
            G+EASS  KGE  CNPKR K WP+LFQRV NARP+   I++
Sbjct: 1200 GREASS-FKGEQRCNPKRSKIWPILFQRVANARPVSGMIKH 1239

[Close]

BLAST of IVF0027037 vs. NCBI nr
Match: KAA0047411.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14086.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (280), Expect = 3.78e-26
Identity = 61/100 (61.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 15  KMRTRMPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCI 74
           KMR RMP TQFF+ GVK+ P+TVSLFC+       NFGTHT     YI  IVPH F Q I
Sbjct: 238 KMRARMPWTQFFHRGVKNSPTTVSLFCVVLVIGASNFGTHTPRTSVYILGIVPHLFFQSI 297

Query: 75  GQEASSSLKGELSCNPKRWKRWPMLFQRVVNARPMLETIE 109
            ++ASS L+GEL C+PKR KRWPMLFQRV NA  + ET E
Sbjct: 298 CRDASS-LEGELRCHPKRSKRWPMLFQRVTNAHLVSETTE 336

[Close]

BLAST of IVF0027037 vs. NCBI nr
Match: KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 9.96e-18
Identity = 50/84 (59.52%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 20 MPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCIGQEAS 79
          MPQTQFF+ G+KSG +TVSLFC+       +F TH +    YIP IVPH FSQ I QE S
Sbjct: 1  MPQTQFFHRGLKSGLATVSLFCVMLVISASSFETHALRSSFYIPRIVPHLFSQSIVQEVS 60

Query: 80 SSLKGELSCNPKRWKRWPMLFQRV 98
            L GEL CN +R KRW MLFQRV
Sbjct: 61 L-LGGELRCNLERPKRWLMLFQRV 83

[Close]

BLAST of IVF0027037 vs. NCBI nr
Match: KAA0051943.1 (hypothetical protein E6C27_scaffold60G004060 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 2.44e-16
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 45  NFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQRVVNARPM 104
           +FGTHT     YIP IVP TFSQ IG +ASS L+ EL CNPKR KRWP+ FQRV NAR +
Sbjct: 371 SFGTHTPRTSVYIPGIVPRTFSQSIGWQASS-LEEELKCNPKRSKRWPLRFQRVGNARIV 430

Query: 105 LETIEN 110
           LET EN
Sbjct: 431 LETTEN 435

[Close]

BLAST of IVF0027037 vs. NCBI nr
Match: KAA0047414.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14089.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 7.37e-11
Identity = 47/96 (48.96%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 7   TSGERSSHKMRTRMPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIV 66
           TSG R   K+R RM +TQFF  GVK  P+  SLFC+       +F THT   L YIP IV
Sbjct: 238 TSGVRP-RKVRARMLRTQFFNHGVKDHPTPDSLFCVLLVKSTSSFRTHTSRTLVYIPGIV 297

Query: 67  PHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQR 97
           PH FSQ  G EAS  L+GEL  N +    W  +F R
Sbjct: 298 PHPFSQSKGWEASL-LEGELR-NVRARMPWTQIFHR 330

The following BLAST results are available for this feature:

BLAST of IVF0027037 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0027037 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VEB1	8.0e-23	60.40	Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo...	[more]
A0A5D3CUK8	6.8e-22	61.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G0069...	[more]
A0A5A7VGQ5	1.4e-14	59.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U7P6	2.0e-13	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CV18	1.1e-08	48.96	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G0079...	[more]

BLAST of IVF0027037 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065520.1	3.61e-27	60.40	retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo v...	[more]
KAA0047411.1	3.78e-26	61.00	gag/pol protein [Cucumis melo var. makuwa] >TYK14086.1 gag/pol protein [Cucumis ...	[more]
KAA0065516.1	9.96e-18	59.52	uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]	[more]
KAA0051943.1	2.44e-16	66.67	hypothetical protein E6C27_scaffold60G004060 [Cucumis melo var. makuwa]	[more]
KAA0047414.1	7.37e-11	48.96	gag/pol protein [Cucumis melo var. makuwa] >TYK14089.1 gag/pol protein [Cucumis ...	[more]

BLAST of IVF0027037 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0027037.1	IVF0027037.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0005488	binding
molecular_function	GO:0003824	catalytic activity