IVF0026984 (gene) Melon (IVF77) v1

Overview


Name	IVF0026984
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Non-LTR retroelement reverse transcriptase-like protein
Location	chr06: 8129312 .. 8129587 (+)
RNA-Seq Expression	IVF0026984
Synteny	IVF0026984

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAATGCTTTCAACGAGTGGCGAACGCTCGTTCGGTGTCAGAAATCACTGGAAATGCATTTGCAGCGAAGGAAACGGGCTGAGCTCAAGGATTTTCGATGCTCCTCCCAAGAAAACGCAAGCGAGAATGCCCCAGACTCAGTTTTCTCGACCTGGGGCAAAAAGCGGTCTCCCAATAGTTTCTTCCCTTTGCTCCGTATTGGTCATAAGCCTTTCGATCTTCGGCGCTCGTACTCCGAGGAATTCAACCCACACTCCTGGCATGCTCCCTGA

mRNA sequence

ATGGCCAATGCTTTCAACGAGTGGCGAACGCTCGTTCGGTGTCAGAAATCACTGGAAATGCATTTGCAGCGAAGGAAACGGGCTGAGCTCAAGGATTTTCGATGCTCCTCCCAAGAAAACGCAAGCGAGAATGCCCCAGACTCAGTTTTCTCGACCTGGGGCAAAAAGCGGTCTCCCAATAGTTTCTTCCCTTTGCTCCGTATTGGTCATAAGCCTTTCGATCTTCGGCGCTCGTACTCCGAGGAATTCAACCCACACTCCTGGCATGCTCCCTGA

Coding sequence (CDS)

ATGGCCAATGCTTTCAACGAGTGGCGAACGCTCGTTCGGTGTCAGAAATCACTGGAAATGCATTTGCAGCGAAGGAAACGGGCTGAGCTCAAGGATTTTCGATGCTCCTCCCAAGAAAACGCAAGCGAGAATGCCCCAGACTCAGTTTTCTCGACCTGGGGCAAAAAGCGGTCTCCCAATAGTTTCTTCCCTTTGCTCCGTATTGGTCATAAGCCTTTCGATCTTCGGCGCTCGTACTCCGAGGAATTCAACCCACACTCCTGGCATGCTCCCTGA

Protein sequence

MANAFNEWRTLVRCQKSLEMHLQRRKRAELKDFRCSSQENASENAPDSVFSTWGKKRSPNSFFPLLRIGHKPFDLRRSYSEEFNPHSWHAP

Homology

[Close]

BLAST of IVF0026984 vs. ExPASy TrEMBL
Match: A0A5A7UVV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00020 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.6e-32
Identity = 70/90 (77.78%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 1  MANAFNEWRTLVRCQKSLEMHLQRRKRAELKDFRCSSQENASENAPDSVFSTWGKKRSPN 60
          MANA NEW+TLVRCQK LEM+LQRRK+ ELKDF CSSQENAS+NAPDS FS+WGKKRSP 
Sbjct: 1  MANASNEWQTLVRCQKPLEMYLQRRKQTELKDFWCSSQENASDNAPDSAFSSWGKKRSPY 60

Query: 61 SFFPLLRIGHKPFDLRRSYSEEFNPHSWHA 91
           FF LLRIGHK FDL+ SY E+FN HSWH+
Sbjct: 61 GFFHLLRIGHKSFDLQGSYYEDFNRHSWHS 90

[Close]

BLAST of IVF0026984 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.6e-27
Identity = 61/71 (85.92%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   MANAFNEWRTLVRCQKSLEMHLQRRKRAELKDFRCSSQENASENAPDSVFSTWGKKRSPN 60
           MANA NEWR LVRCQK LEMHLQRRKR EL+DFRCSSQEN SENAPDS FS+WGKKRSP+
Sbjct: 165 MANASNEWRMLVRCQKPLEMHLQRRKRVELEDFRCSSQENVSENAPDSAFSSWGKKRSPD 224

Query: 61  SFFPLLRIGHK 72
            FFPLLRIGHK
Sbjct: 225 GFFPLLRIGHK 235

[Close]

BLAST of IVF0026984 vs. ExPASy TrEMBL
Match: A0A5D3CGX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00560 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.0e-24
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 1   MANAFNEWRTLVRCQKSLEMHLQRRKRAELKD---------------FRCSSQENASENA 60
           + NA  EWRTLVRCQK L+MHLQ+RK AEL+D               FRCSS ENASENA
Sbjct: 284 LGNASKEWRTLVRCQKPLKMHLQQRKWAELEDFWCSSQQRKRVELDVFRCSSLENASENA 343

Query: 61  PDSVFSTWGKKRSPNSFFPLLRIGHKPFDLRRSYSEEFNPHS 88
            DSVFS+ G+K+  + FFPLLRIGH+ FDLR SYSE+FNPHS
Sbjct: 344 LDSVFSSCGEKQFFDDFFPLLRIGHQSFDLRGSYSEDFNPHS 385

[Close]

BLAST of IVF0026984 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.0e-23
Identity = 55/70 (78.57%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 22   LQRRKRAELKDFRCSSQENASENAPDSVFSTWGKKRSPNSFFPLLRIGHKPFDLRRSYSE 81
            ++RR RA+LKDFRCSSQENASEN  DSVFS+W KK +P+ FFPLLRIGHK FDLR SYSE
Sbjct: 1017 VERRNRADLKDFRCSSQENASENDSDSVFSSWCKKWTPDGFFPLLRIGHKSFDLRGSYSE 1076

Query: 82   EFNPHSWHAP 92
            +FNPHSWHAP
Sbjct: 1077 DFNPHSWHAP 1086

[Close]

BLAST of IVF0026984 vs. ExPASy TrEMBL
Match: A0A5D3E5W4 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002550 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.1e-23
Identity = 57/75 (76.00%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 1  MANAFNEWRTLVRCQKSLEMHLQRRKRAELKDFRCSSQENASENAPDSVFSTWGKKRSPN 60
          M +A NEWRTLVRCQK LEMHLQ+RKRAEL+DF   SQEN SENA + VFS+WGKK SPN
Sbjct: 1  MVDASNEWRTLVRCQKPLEMHLQKRKRAELEDFWSLSQENTSENALNPVFSSWGKKGSPN 60

Query: 61 SFFPLLRIGHKPFDL 76
           FFPL RIGHK FDL
Sbjct: 61 GFFPLFRIGHKSFDL 75

[Close]

BLAST of IVF0026984 vs. NCBI nr
Match: KAA0057641.1 (hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 148 bits (373), Expect = 4.30e-39
Identity = 70/90 (77.78%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 1  MANAFNEWRTLVRCQKSLEMHLQRRKRAELKDFRCSSQENASENAPDSVFSTWGKKRSPN 60
          MANA NEW+TLVRCQK LEM+LQRRK+ ELKDF CSSQENAS+NAPDS FS+WGKKRSP 
Sbjct: 1  MANASNEWQTLVRCQKPLEMYLQRRKQTELKDFWCSSQENASDNAPDSAFSSWGKKRSPY 60

Query: 61 SFFPLLRIGHKPFDLRRSYSEEFNPHSWHA 90
           FF LLRIGHK FDL+ SY E+FN HSWH+
Sbjct: 61 GFFHLLRIGHKSFDLQGSYYEDFNRHSWHS 90

[Close]

BLAST of IVF0026984 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (324), Expect = 1.66e-32
Identity = 61/71 (85.92%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   MANAFNEWRTLVRCQKSLEMHLQRRKRAELKDFRCSSQENASENAPDSVFSTWGKKRSPN 60
           MANA NEWR LVRCQK LEMHLQRRKR EL+DFRCSSQEN SENAPDS FS+WGKKRSP+
Sbjct: 165 MANASNEWRMLVRCQKPLEMHLQRRKRVELEDFRCSSQENVSENAPDSAFSSWGKKRSPD 224

Query: 61  SFFPLLRIGHK 71
            FFPLLRIGHK
Sbjct: 225 GFFPLLRIGHK 235

[Close]

BLAST of IVF0026984 vs. NCBI nr
Match: KAA0040927.1 (hypothetical protein E6C27_scaffold125G00720 [Cucumis melo var. makuwa] >TYK10610.1 hypothetical protein E5676_scaffold315G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 6.09e-30
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 1   MANAFNEWRTLVRCQKSLEMHLQRRKRAELKDF---------------RCSSQENASENA 60
           + NA  EWRTLVRCQK L+MHLQ+RK AEL+DF               RCSS ENASENA
Sbjct: 284 LGNASKEWRTLVRCQKPLKMHLQQRKWAELEDFWCSSQQRKRVELDVFRCSSLENASENA 343

Query: 61  PDSVFSTWGKKRSPNSFFPLLRIGHKPFDLRRSYSEEFNPHS 87
            DSVFS+ G+K+  + FFPLLRIGH+ FDLR SYSE+FNPHS
Sbjct: 344 LDSVFSSCGEKQFFDDFFPLLRIGHQSFDLRGSYSEDFNPHS 385

[Close]

BLAST of IVF0026984 vs. NCBI nr
Match: KAA0035524.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (292), Expect = 4.28e-29
Identity = 57/75 (76.00%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 1  MANAFNEWRTLVRCQKSLEMHLQRRKRAELKDFRCSSQENASENAPDSVFSTWGKKRSPN 60
          M +A NEWRTLVRCQK LEMHLQ+RKRAEL+DF   SQEN SENA + VFS+WGKK SPN
Sbjct: 1  MVDASNEWRTLVRCQKPLEMHLQKRKRAELEDFWSLSQENTSENALNPVFSSWGKKGSPN 60

Query: 61 SFFPLLRIGHKPFDL 75
           FFPL RIGHK FDL
Sbjct: 61 GFFPLFRIGHKSFDL 75

[Close]

BLAST of IVF0026984 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 5.50e-29
Identity = 55/70 (78.57%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 22   LQRRKRAELKDFRCSSQENASENAPDSVFSTWGKKRSPNSFFPLLRIGHKPFDLRRSYSE 81
            ++RR RA+LKDFRCSSQENASEN  DSVFS+W KK +P+ FFPLLRIGHK FDLR SYSE
Sbjct: 1017 VERRNRADLKDFRCSSQENASENDSDSVFSSWCKKWTPDGFFPLLRIGHKSFDLRGSYSE 1076

Query: 82   EFNPHSWHAP 91
            +FNPHSWHAP
Sbjct: 1077 DFNPHSWHAP 1086

The following BLAST results are available for this feature:

BLAST of IVF0026984 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026984 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UVV0	1.6e-32	77.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DFP2	7.6e-27	85.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CGX3	6.0e-24	62.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V5J2	1.0e-23	78.57	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5D3E5W4	5.1e-23	76.00	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of IVF0026984 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057641.1	4.30e-39	77.78	hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa]	[more]
TYK22521.1	1.66e-32	85.92	uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]	[more]
KAA0040927.1	6.09e-30	62.75	hypothetical protein E6C27_scaffold125G00720 [Cucumis melo var. makuwa] >TYK1061...	[more]
KAA0035524.1	4.28e-29	76.00	NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR t...	[more]
KAA0062888.1	5.50e-29	78.57	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]

BLAST of IVF0026984 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026984.1	IVF0026984.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003964	RNA-directed DNA polymerase activity