Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGTAAGTGTTGGAAGGTTGTACTCATTGGATGGGAACTGTCATCTGCCAAGGATACAACTAGTAAGGATGTTTTGAAACCTAAAATCACTTGGACTAAGGAAGAGGATGAAACATCTCTTGGGAACTCATGTGCATTAAATGCTTTGTTTAATAGGGTAAGCCAAAATGTTTTTAAAATAAACAATACCTATACTTCTGCTAAAGAAGCATGGAACATCTTGGAGGTTGCCTACGAAGGGACCTCAAAAATCAAAGTATCTAAGCTTCAGATTCTGACCTTAAGGTTTGAAGCTCTCAAGATGGCTGAAGAAGAAACTATTGAAGAATTTAATGTTCGTGTACTGGATTTGGCAAATGAGCCATTTACTCTTAGAGAAAAAATTTCTGACTCAAAGATGGTTTAG
mRNA sequence
ATGGGAAGTAAGTGTTGGAAGGTTGTACTCATTGGATGGGAACTGTCATCTGCCAAGGATACAACTAGTAAGGATGTTTTGAAACCTAAAATCACTTGGACTAAGGAAGAGGATGAAACATCTCTTGGGAACTCATGTGCATTAAATGCTTTGTTTAATAGGGTAAGCCAAAATGTTTTTAAAATAAACAATACCTATACTTCTGCTAAAGAAGCATGGAACATCTTGGAGGTTGCCTACGAAGGGACCTCAAAAATCAAAGTATCTAAGCTTCAGATTCTGACCTTAAGGTTTGAAGCTCTCAAGATGGCTGAAGAAGAAACTATTGAAGAATTTAATGTTCGTGTACTGGATTTGGCAAATGAGCCATTTACTCTTAGAGAAAAAATTTCTGACTCAAAGATGGTTTAG
Coding sequence (CDS)
ATGGGAAGTAAGTGTTGGAAGGTTGTACTCATTGGATGGGAACTGTCATCTGCCAAGGATACAACTAGTAAGGATGTTTTGAAACCTAAAATCACTTGGACTAAGGAAGAGGATGAAACATCTCTTGGGAACTCATGTGCATTAAATGCTTTGTTTAATAGGGTAAGCCAAAATGTTTTTAAAATAAACAATACCTATACTTCTGCTAAAGAAGCATGGAACATCTTGGAGGTTGCCTACGAAGGGACCTCAAAAATCAAAGTATCTAAGCTTCAGATTCTGACCTTAAGGTTTGAAGCTCTCAAGATGGCTGAAGAAGAAACTATTGAAGAATTTAATGTTCGTGTACTGGATTTGGCAAATGAGCCATTTACTCTTAGAGAAAAAATTTCTGACTCAAAGATGGTTTAG
Protein sequence
MGSKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALKMAEEETIEEFNVRVLDLANEPFTLREKISDSKMV
Homology
BLAST of IVF0026962 vs. ExPASy TrEMBL
Match:
A0A5D3E2Q7 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001350 PE=4 SV=1)
HSP 1 Score: 265.4 bits (677), Expect = 1.3e-67
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0
Query: 1 MGSKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVF 60
MGSKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVF
Sbjct: 1 MGSKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVF 60
Query: 61 KINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALKMAEEETIEEFNVRVLDLA 120
KINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALKMA+EETIEEFNVRVLDLA
Sbjct: 61 KINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALKMAKEETIEEFNVRVLDLA 120
Query: 121 NEPFTLREKISDSKMV 137
NEPFTLREKISDSKMV
Sbjct: 121 NEPFTLREKISDSKMV 136
BLAST of IVF0026962 vs. ExPASy TrEMBL
Match:
A0A5D3CDY8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold404G00030 PE=4 SV=1)
HSP 1 Score: 176.0 bits (445), Expect = 1.1e-40
Identity = 92/135 (68.15%), Postives = 105/135 (77.78%), Query Frame = 0
Query: 1 MGSKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVF 60
M SKCWK VL G EL S KD K LKP+ITWTKE DE SLGN ALNALFN ++ NVF
Sbjct: 8 MDSKCWKSVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVF 67
Query: 61 KINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALKMAEEETIEEFNVRVLDLA 120
K+ NT TSAKEAWNILEV YEGTSK+KV +LQILT RFEALK+ ++ETI +FNV +LDL
Sbjct: 68 KLINTCTSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLV 127
Query: 121 NEPFTLREKISDSKM 136
NE F + EKI+ SKM
Sbjct: 128 NESFAICEKIAKSKM 142
BLAST of IVF0026962 vs. ExPASy TrEMBL
Match:
A0A5A7SVY3 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00220 PE=4 SV=1)
HSP 1 Score: 170.2 bits (430), Expect = 5.8e-39
Identity = 84/134 (62.69%), Postives = 105/134 (78.36%), Query Frame = 0
Query: 3 SKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKI 62
SKCWK ++ G E S KD K+ LK +ITW+K++DE + GNS ALNA+FN V QN+FK
Sbjct: 44 SKCWKAMIAGLEHPSPKDVAGKETLKQEITWSKDKDEAAFGNSRALNAIFNGVDQNIFKW 103
Query: 63 NNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALKMAEEETIEEFNVRVLDLANE 122
NT AKEAWNILE AYEGTSK+K+SKLQIL+ +FEA+K+ E+ETI EFNVRVLDLANE
Sbjct: 104 INTCLFAKEAWNILETAYEGTSKVKISKLQILSSKFEAVKLTEDETIVEFNVRVLDLANE 163
Query: 123 PFTLREKISDSKMV 137
F L EK++++K V
Sbjct: 164 SFALSEKLTNTKQV 177
BLAST of IVF0026962 vs. ExPASy TrEMBL
Match:
A0A1S3CKP5 (uncharacterized protein LOC103502061 OS=Cucumis melo OX=3656 GN=LOC103502061 PE=4 SV=1)
HSP 1 Score: 170.2 bits (430), Expect = 5.8e-39
Identity = 84/134 (62.69%), Postives = 105/134 (78.36%), Query Frame = 0
Query: 3 SKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKI 62
SKCWK ++ G E S KD K+ LK +ITW+K++DE + GNS ALNA+FN V QN+FK
Sbjct: 44 SKCWKAMIAGLEHPSPKDVAGKETLKQEITWSKDKDEAAFGNSRALNAIFNGVDQNIFKW 103
Query: 63 NNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALKMAEEETIEEFNVRVLDLANE 122
NT AKEAWNILE AYEGTSK+K+SKLQIL+ +FEA+K+ E+ETI EFNVRVLDLANE
Sbjct: 104 INTCLFAKEAWNILETAYEGTSKVKISKLQILSSKFEAVKLTEDETIVEFNVRVLDLANE 163
Query: 123 PFTLREKISDSKMV 137
F L EK++++K V
Sbjct: 164 SFALSEKLTNTKQV 177
BLAST of IVF0026962 vs. ExPASy TrEMBL
Match:
A0A5A7UZ81 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G001460 PE=4 SV=1)
HSP 1 Score: 166.0 bits (419), Expect = 1.1e-37
Identity = 88/123 (71.54%), Postives = 97/123 (78.86%), Query Frame = 0
Query: 14 ELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAW 73
E S KD T K + KP+ITW KEEDE SLGNS ALNALFN V Q+VFK+ NT TS K+ W
Sbjct: 2 EPPSIKDETGKTIFKPEITWIKEEDEASLGNSRALNALFNGVDQSVFKLINTCTSTKKTW 61
Query: 74 NILEVAYEGTSKIKVSKLQILTLRFEALKMAEEETIEEFNVRVLDLANEPFTLREKISDS 133
N+LEVAYEGTS +KVS+LQILT RFEALKM EEETI EFNVRVLD ANE F L E I +S
Sbjct: 62 NMLEVAYEGTSIVKVSRLQILTSRFEALKMVEEETIVEFNVRVLDFANESFALGENIPES 121
Query: 134 KMV 137
KMV
Sbjct: 122 KMV 124
BLAST of IVF0026962 vs. NCBI nr
Match:
TYK29881.1 (gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 266 bits (680), Expect = 1.19e-89
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0
Query: 1 MGSKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVF 60
MGSKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVF
Sbjct: 1 MGSKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVF 60
Query: 61 KINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALKMAEEETIEEFNVRVLDLA 120
KINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALKMA+EETIEEFNVRVLDLA
Sbjct: 61 KINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALKMAKEETIEEFNVRVLDLA 120
Query: 121 NEPFTLREKISDSKMV 136
NEPFTLREKISDSKMV
Sbjct: 121 NEPFTLREKISDSKMV 136
BLAST of IVF0026962 vs. NCBI nr
Match:
KAA0038855.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK09428.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 177 bits (448), Expect = 3.46e-53
Identity = 92/135 (68.15%), Postives = 105/135 (77.78%), Query Frame = 0
Query: 1 MGSKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVF 60
M SKCWK VL G EL S KD K LKP+ITWTKE DE SLGN ALNALFN ++ NVF
Sbjct: 8 MDSKCWKSVLTGRELPSIKDAAGKTTLKPEITWTKEVDEESLGNLRALNALFNGINHNVF 67
Query: 61 KINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALKMAEEETIEEFNVRVLDLA 120
K+ NT TSAKEAWNILEV YEGTSK+KV +LQILT RFEALK+ ++ETI +FNV +LDL
Sbjct: 68 KLINTCTSAKEAWNILEVTYEGTSKVKVLRLQILTSRFEALKINDDETIAKFNVWMLDLV 127
Query: 121 NEPFTLREKISDSKM 135
NE F + EKI+ SKM
Sbjct: 128 NESFAICEKIAKSKM 142
BLAST of IVF0026962 vs. NCBI nr
Match:
KAA0035422.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK25729.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 171 bits (433), Expect = 1.57e-50
Identity = 84/134 (62.69%), Postives = 105/134 (78.36%), Query Frame = 0
Query: 3 SKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKI 62
SKCWK ++ G E S KD K+ LK +ITW+K++DE + GNS ALNA+FN V QN+FK
Sbjct: 44 SKCWKAMIAGLEHPSPKDVAGKETLKQEITWSKDKDEAAFGNSRALNAIFNGVDQNIFKW 103
Query: 63 NNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALKMAEEETIEEFNVRVLDLANE 122
NT AKEAWNILE AYEGTSK+K+SKLQIL+ +FEA+K+ E+ETI EFNVRVLDLANE
Sbjct: 104 INTCLFAKEAWNILETAYEGTSKVKISKLQILSSKFEAVKLTEDETIVEFNVRVLDLANE 163
Query: 123 PFTLREKISDSKMV 136
F L EK++++K V
Sbjct: 164 SFALSEKLTNTKQV 177
BLAST of IVF0026962 vs. NCBI nr
Match:
KAA0060354.1 (gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 167 bits (422), Expect = 5.10e-50
Identity = 88/123 (71.54%), Postives = 97/123 (78.86%), Query Frame = 0
Query: 14 ELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAW 73
E S KD T K + KP+ITW KEEDE SLGNS ALNALFN V Q+VFK+ NT TS K+ W
Sbjct: 2 EPPSIKDETGKTIFKPEITWIKEEDEASLGNSRALNALFNGVDQSVFKLINTCTSTKKTW 61
Query: 74 NILEVAYEGTSKIKVSKLQILTLRFEALKMAEEETIEEFNVRVLDLANEPFTLREKISDS 133
N+LEVAYEGTS +KVS+LQILT RFEALKM EEETI EFNVRVLD ANE F L E I +S
Sbjct: 62 NMLEVAYEGTSIVKVSRLQILTSRFEALKMVEEETIVEFNVRVLDFANESFALGENIPES 121
Query: 134 KMV 136
KMV
Sbjct: 122 KMV 124
BLAST of IVF0026962 vs. NCBI nr
Match:
XP_008464095.1 (PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo])
HSP 1 Score: 171 bits (433), Expect = 1.65e-48
Identity = 84/134 (62.69%), Postives = 105/134 (78.36%), Query Frame = 0
Query: 3 SKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKI 62
SKCWK ++ G E S KD K+ LK +ITW+K++DE + GNS ALNA+FN V QN+FK
Sbjct: 44 SKCWKAMIAGLEHPSPKDVAGKETLKQEITWSKDKDEAAFGNSRALNAIFNGVDQNIFKW 103
Query: 63 NNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALKMAEEETIEEFNVRVLDLANE 122
NT AKEAWNILE AYEGTSK+K+SKLQIL+ +FEA+K+ E+ETI EFNVRVLDLANE
Sbjct: 104 INTCLFAKEAWNILETAYEGTSKVKISKLQILSSKFEAVKLTEDETIVEFNVRVLDLANE 163
Query: 123 PFTLREKISDSKMV 136
F L EK++++K V
Sbjct: 164 SFALSEKLTNTKQV 177
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3E2Q7 | 1.3e-67 | 99.26 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G... | [more] |
| A0A5D3CDY8 | 1.1e-40 | 68.15 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold404G... | [more] |
| A0A5A7SVY3 | 5.8e-39 | 62.69 | Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... | [more] |
| A0A1S3CKP5 | 5.8e-39 | 62.69 | uncharacterized protein LOC103502061 OS=Cucumis melo OX=3656 GN=LOC103502061 PE=... | [more] |
| A0A5A7UZ81 | 1.1e-37 | 71.54 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G0... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK29881.1 | 1.19e-89 | 99.26 | gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
| KAA0038855.1 | 3.46e-53 | 68.15 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYK09428.1 gag-pol polyprotein [... | [more] |
| KAA0035422.1 | 1.57e-50 | 62.69 | gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK25729.1 gag-proteinase... | [more] |
| KAA0060354.1 | 5.10e-50 | 71.54 | gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
| XP_008464095.1 | 1.65e-48 | 62.69 | PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
