IVF0026957 (gene) Melon (IVF77) v1

Overview
NameIVF0026957
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr07: 3823005 .. 3823172 (+)
RNA-Seq ExpressionIVF0026957
SyntenyIVF0026957
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGAGGACGTTGATGACGTGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGAACTAGTCGAATCGATGTTCACCGATTGGCAGTTGCATAATGCTTAG

mRNA sequence

ATGACATATTGCGAGGACGTTGATGACGTGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGAACTAGTCGAATCGATGTTCACCGATTGGCAGTTGCATAATGCTTAG

Coding sequence (CDS)

ATGACATATTGCGAGGACGTTGATGACGTGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGAACTAGTCGAATCGATGTTCACCGATTGGCAGTTGCATAATGCTTAG

Protein sequence

MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA
Homology
BLAST of IVF0026957 vs. ExPASy TrEMBL
Match: A0A5A7VK86 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001570 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.1e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 56
           MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA
Sbjct: 246 MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 300

BLAST of IVF0026957 vs. ExPASy TrEMBL
Match: A0A5D3BDZ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00280 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-21
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1  MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 56
          MTYC+D+DDVDEGDS YATTTASEDIHYIETTNEWSQWRDEL ESMFTDWQL NA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

BLAST of IVF0026957 vs. ExPASy TrEMBL
Match: A0A5A7VDR4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00940 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-21
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 56
           MTYCEDV+DVDEGDSTYATTTASEDIHYIETTNEWSQW DELV+SMFTDWQL NA
Sbjct: 311 MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELVKSMFTDWQLRNA 365

BLAST of IVF0026957 vs. ExPASy TrEMBL
Match: A0A5D3CUG9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00180 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-21
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 56
           MTYC+DVDDVDEGDSTYATT ASEDIHYIETTNEWSQWRDEL ESMFTDWQL NA
Sbjct: 261 MTYCKDVDDVDEGDSTYATTIASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 315

BLAST of IVF0026957 vs. ExPASy TrEMBL
Match: A0A5D3BAK8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19391G00020 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-21
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 56
           MTYCEDV+DVDEGDSTYATTTASEDIHYIETTNEWSQW DELV+SMFTDWQL NA
Sbjct: 219 MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELVKSMFTDWQLRNA 273

BLAST of IVF0026957 vs. NCBI nr
Match: KAA0066806.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK27953.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (294), Expect = 1.67e-30
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 55
           MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA
Sbjct: 246 MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 300

BLAST of IVF0026957 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 4.37e-30
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1  MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 55
          MTYC+D+DDVDEGDS YATTTASEDIHYIETTNEWSQWRDEL ESMFTDWQL NA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

BLAST of IVF0026957 vs. NCBI nr
Match: TYK07212.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (271), Expect = 7.14e-28
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 55
           MTYC++VDD+DEGDSTY TTTASEDIHYIETTNEWSQWRDELVESMFTDWQL NA
Sbjct: 162 MTYCDNVDDMDEGDSTYTTTTASEDIHYIETTNEWSQWRDELVESMFTDWQLRNA 216

BLAST of IVF0026957 vs. NCBI nr
Match: TYK05336.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (262), Expect = 8.81e-28
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 55
           MTYCEDVDD DEGDSTYATTTASEDI YIETTNEWSQWRD+L ESMFTDWQL N+
Sbjct: 53  MTYCEDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNS 107

BLAST of IVF0026957 vs. NCBI nr
Match: TYJ95515.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 1.80e-27
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 55
           MTYCEDV+DVDEGDSTYATTTASEDIHYIETTNEWSQW DELV+SMFTDWQL NA
Sbjct: 219 MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELVKSMFTDWQLRNA 273

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VK868.1e-24100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BDZ02.2e-2190.91Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VDR42.9e-2192.73Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CUG92.9e-2192.73Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BAK82.9e-2192.73Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0066806.11.67e-30100.00retrotransposon protein [Cucumis melo var. makuwa] >TYK27953.1 retrotransposon p... [more]
KAA0054051.14.37e-3090.91retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p... [more]
TYK07212.17.14e-2890.91retrotransposon protein [Cucumis melo var. makuwa][more]
TYK05336.18.81e-2889.09retrotransposon protein [Cucumis melo var. makuwa][more]
TYJ95515.11.80e-2792.73retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0026957.1IVF0026957.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
molecular_function GO:0046872 metal ion binding