IVF0026957 (gene) Melon (IVF77) v1

Overview


Name	IVF0026957
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr07: 3823005 .. 3823172 (+)
RNA-Seq Expression	IVF0026957
Synteny	IVF0026957

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATATTGCGAGGACGTTGATGACGTGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGAACTAGTCGAATCGATGTTCACCGATTGGCAGTTGCATAATGCTTAG

mRNA sequence

ATGACATATTGCGAGGACGTTGATGACGTGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGAACTAGTCGAATCGATGTTCACCGATTGGCAGTTGCATAATGCTTAG

Coding sequence (CDS)

ATGACATATTGCGAGGACGTTGATGACGTGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGAACTAGTCGAATCGATGTTCACCGATTGGCAGTTGCATAATGCTTAG

Protein sequence

MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA

Homology

[Close]

BLAST of IVF0026957 vs. ExPASy TrEMBL
Match: A0A5A7VK86 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001570 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.1e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 56
           MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA
Sbjct: 246 MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 300

[Close]

BLAST of IVF0026957 vs. ExPASy TrEMBL
Match: A0A5D3BDZ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00280 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-21
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 56
          MTYC+D+DDVDEGDS YATTTASEDIHYIETTNEWSQWRDEL ESMFTDWQL NA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

[Close]

BLAST of IVF0026957 vs. ExPASy TrEMBL
Match: A0A5A7VDR4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00940 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-21
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 56
           MTYCEDV+DVDEGDSTYATTTASEDIHYIETTNEWSQW DELV+SMFTDWQL NA
Sbjct: 311 MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELVKSMFTDWQLRNA 365

[Close]

BLAST of IVF0026957 vs. ExPASy TrEMBL
Match: A0A5D3CUG9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00180 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-21
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 56
           MTYC+DVDDVDEGDSTYATT ASEDIHYIETTNEWSQWRDEL ESMFTDWQL NA
Sbjct: 261 MTYCKDVDDVDEGDSTYATTIASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 315

[Close]

BLAST of IVF0026957 vs. ExPASy TrEMBL
Match: A0A5D3BAK8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19391G00020 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-21
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 56
           MTYCEDV+DVDEGDSTYATTTASEDIHYIETTNEWSQW DELV+SMFTDWQL NA
Sbjct: 219 MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELVKSMFTDWQLRNA 273

[Close]

BLAST of IVF0026957 vs. NCBI nr
Match: KAA0066806.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK27953.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (294), Expect = 1.67e-30
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 55
           MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA
Sbjct: 246 MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 300

[Close]

BLAST of IVF0026957 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 4.37e-30
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 55
          MTYC+D+DDVDEGDS YATTTASEDIHYIETTNEWSQWRDEL ESMFTDWQL NA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

[Close]

BLAST of IVF0026957 vs. NCBI nr
Match: TYK07212.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (271), Expect = 7.14e-28
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 55
           MTYC++VDD+DEGDSTY TTTASEDIHYIETTNEWSQWRDELVESMFTDWQL NA
Sbjct: 162 MTYCDNVDDMDEGDSTYTTTTASEDIHYIETTNEWSQWRDELVESMFTDWQLRNA 216

[Close]

BLAST of IVF0026957 vs. NCBI nr
Match: TYK05336.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (262), Expect = 8.81e-28
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 55
           MTYCEDVDD DEGDSTYATTTASEDI YIETTNEWSQWRD+L ESMFTDWQL N+
Sbjct: 53  MTYCEDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNS 107

[Close]

BLAST of IVF0026957 vs. NCBI nr
Match: TYJ95515.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 1.80e-27
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 55
           MTYCEDV+DVDEGDSTYATTTASEDIHYIETTNEWSQW DELV+SMFTDWQL NA
Sbjct: 219 MTYCEDVNDVDEGDSTYATTTASEDIHYIETTNEWSQWHDELVKSMFTDWQLRNA 273

The following BLAST results are available for this feature:

BLAST of IVF0026957 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026957 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VK86	8.1e-24	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDZ0	2.2e-21	90.91	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VDR4	2.9e-21	92.73	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CUG9	2.9e-21	92.73	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BAK8	2.9e-21	92.73	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0026957 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066806.1	1.67e-30	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK27953.1 retrotransposon p...	[more]
KAA0054051.1	4.37e-30	90.91	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p...	[more]
TYK07212.1	7.14e-28	90.91	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK05336.1	8.81e-28	89.09	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ95515.1	1.80e-27	92.73	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0026957 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026957.1	IVF0026957.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016788	hydrolase activity, acting on ester bonds
molecular_function	GO:0046872	metal ion binding