IVF0026891 (gene) Melon (IVF77) v1

Overview


Name	IVF0026891
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	CACTA en-spm transposon protein
Location	chr10: 22761770 .. 22764115 (+)
RNA-Seq Expression	IVF0026891
Synteny	IVF0026891

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCATTTACTGTCCATTTGCTGTGGAAAGCAAGAATTGTTGGACCTGAATATAGTTGTATGTATCCAATTGAAAGGTATGTGAAATTTTTGTTTCTATTACTTTTATGATATAGGGTTTCAACACATTTAATTTGGTTCATGTTGTCTAAGGAGTTTGCGGTATTTAAAGCAATATGTTAAAAACAAAACATATGTCATAAATGAATTCTTGAACTTTTGTTTTATATATTTATGTGGCATTGAACAAGGTTTAATAGAGGGGATCAAAATAACGATAAAATTGATGATGAGGAGATCAATATTGCGGTCTATCAATTTTTCTCTCAACACATAAGGTGGTTAGGTGGTGTCGTATTTCGACAACTAGACCCTGATTAGTTAGAGAAATCACATTGGTATATTCTAAACAACTATGATGAAATGGAACCTTATCTGCAGTATGTATCGCTTTGCTTATATTCATTTTTAATATTAAATATGACTAAAACATTACACGAACTTGCAAAACATAGGAAGCATATGAGAATCCTTGAGTTGAGTAATGGTCATGGTGATTTCAATAAGAGACAACAATAGAATTCCCTACTTGGTTCAAAGCAAAGATATGCCTTTCTTTATGATTGTACCTTGCGTTATACAAATTTTTATTACATTTAAGCATGCCTTTGTGATTAGGCCCAAAAGTTGCATTGTGATAGATCCATATTCAATGATTTGTATGCCATTGCCTATGGTACGAATGACTATGCTCGCTCTTATAGTGGGTGTATAGCAAATGGAGTTTGATTTCATACTAAAAATCGTGATAGTCATCAGACCACTCAAAATAAGTGGAGTAATGGTGTCAGGTGATGATGAAACATGACAAATCTTTTTCTATGGCAAACTACATGTAATTATAAGGCTACAATACATTTGCATGAAGGTAGTTGCGCTTTTTAGGTGTGAATGGTATGATACTAGTTCGAGGAAAAATAGAATTAACATAGTTGATGATTTTATATCAATAAACACTCGTAAGTGATGATACAAAGATGAGCCTTTCATCCTTGTAAGTCAAGCAACATAAAGCTTTTACTTAGATGATTACAAACTTGGTCAAGATTGGAAAATAGTTCAATAAACTCAACTGAGACATGTGTGGGATATTCCATTAATAGAAAGTAATGAAATAGAAGTAGCATCAGATGAAACCATATTCACATGTTATCCTAGAGTTGAACATAACCTAGATTCACAAACTTTTAATAGAGAAGATGTTGAACCTTCGATAATTAGAGACCAAGGAGACTTTACTATACAAAGTAATGAAGAAGCATCATCTGTTGAAGCATTGATTGATGAAGAAGATTTTGATTCACATAATTCTAGCGATGAGTCAACGAGTGATGAAGATTGTGATAGCTAATGACTTTTAATCATACTACCAAGGTTATACATAACTAACTATGATTTTATTTATGCATATATTTGAATTCTACATAATTTGTTCATTTACTTTTATGTTTATAGTTATATTTATGCATAAAAACATTTTGTAGTATGTCGTCAAAATTGTAATAGGTCATCTTTAAATGTGAACCAAGCAAACAATTCTAATCAAAATAGTATTAGTGAGCAAGAAGTGGTGTCCATAGATTAAGACATTCAAAGTATGTATTTATCTTTATGTTAAATCTTCTAGTTCTCATGCAACATTAGATGAATTAATATTAACATTTCTTATGTAGGTTCTAGTACAAAGAAAAAAAAAAAAGGTTGAAGAGCGACTAGAAGGGTTGGACTTGAGAAATATGTCCAAGCAAATGGTCCCATTCTAATTAGAATTGACTTTGAAGATGGAAAACTGATTTGTAAGGACTCCTCCAAGTTAAACTCTCAAATTGAAAAAGAGGTATGAGCGATAGTATCACATGAATGTGAACATTTGTCAGATGTATTCAAAGAGGTGAAAAGGGAGATAGTAGATTGACTTTGGTAAGTTATTTAAGTTTAGTATTAACTAACTTGTTTTATTTCTTAATGCTAGAATTACTTCATTCTAGACATAAATGAACCTTTGGTACAAGATTATCTTGATCATGAGATGAGTATATTGTATAGAGATTTTTGTTGTTCACTACACAAAATCTACAAAAAATATGACTCTCCAGTTGAAGCACGAAAAAACCTTGACAAACGAGTGGCACGGGATCTAGATTGAGCTAGTTTATGTGATCGATTAGAATGAGAAGACTTTAAGAGTAGATCTGAAGCAAATATTAAAGCACGATCTAAACTTCCATTCATTCATCTAGGTGGAACTGCAACATTTTTACGCCATAAGCAGAAAATGGTATGA

mRNA sequence

ATGGTCCATTTACTGTCCATTTGCTGTGGAAAGCAAGAATTGTTGGACCTGAATATAGTTGTATGTATCCAATTGAAAGCGACTAGAAGGGTTGGACTTGAGAAATATGTCCAAGCAAATGGTCCCATTCTAATTAGAATTGACTTTGAAGATGGAAAACTGATTTGTAAGGACTCCTCCAAGTTAAACTCTCAAATTGAAAAAGAGAATTACTTCATTCTAGACATAAATGAACCTTTGGTACAAGATTATCTTGATCATGAGATGAGTATATTGTATAGAGATTTTTGTTGTTCACTACACAAAATCTACAAAAAATATGACTCTCCAGTTGAAGCACGAAAAAACCTTGACAAACGAAGTAGATCTGAAGCAAATATTAAAGCACGATCTAAACTTCCATTCATTCATCTAGGTGGAACTGCAACATTTTTACGCCATAAGCAGAAAATGGTATGA

Coding sequence (CDS)

ATGGTCCATTTACTGTCCATTTGCTGTGGAAAGCAAGAATTGTTGGACCTGAATATAGTTGTATGTATCCAATTGAAAGCGACTAGAAGGGTTGGACTTGAGAAATATGTCCAAGCAAATGGTCCCATTCTAATTAGAATTGACTTTGAAGATGGAAAACTGATTTGTAAGGACTCCTCCAAGTTAAACTCTCAAATTGAAAAAGAGAATTACTTCATTCTAGACATAAATGAACCTTTGGTACAAGATTATCTTGATCATGAGATGAGTATATTGTATAGAGATTTTTGTTGTTCACTACACAAAATCTACAAAAAATATGACTCTCCAGTTGAAGCACGAAAAAACCTTGACAAACGAAGTAGATCTGAAGCAAATATTAAAGCACGATCTAAACTTCCATTCATTCATCTAGGTGGAACTGCAACATTTTTACGCCATAAGCAGAAAATGGTATGA

Protein sequence

MVHLLSICCGKQELLDLNIVVCIQLKATRRVGLEKYVQANGPILIRIDFEDGKLICKDSSKLNSQIEKENYFILDINEPLVQDYLDHEMSILYRDFCCSLHKIYKKYDSPVEARKNLDKRSRSEANIKARSKLPFIHLGGTATFLRHKQKMV

Homology

[Close]

BLAST of IVF0026891 vs. ExPASy TrEMBL
Match: A0A0A0LM17 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G294860 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.6e-42
Identity = 101/163 (61.96%), Postives = 116/163 (71.17%), Query Frame = 0


Query: 10  GKQELLDLNIVVCIQLKATRRVGLEKYVQANGPILIRIDFEDGKLICKDSSKLNSQIEKE 69
           G+QE++ ++  +   L+A     LEKYVQANG I I+I+ +D K ICKDSSK NSQI KE
Sbjct: 13  GEQEVVFVDSDIQKGLRA-----LEKYVQANGLIPIKIELKDRKPICKDSSKSNSQIGKE 72

Query: 70  NYFILDINEPLVQDYLDHEMSILYRDFCCSLHKIYKKYDSPVEARKNLDKR--------- 129
           NYFILD+++PLVQDYLDHEMS+LYRDF CSLHK YKK DSP EARK+ DKR         
Sbjct: 73  NYFILDLDDPLVQDYLDHEMSVLYRDFHCSLHKSYKKCDSPTEARKHCDKRVAQDSDWAR 132

Query: 130 -----------SRSEANIKARSKLPFIHLGGTATFLRHKQKMV 153
                      SRSEAN KARSKLPF H GGT TFLRHKQKMV
Sbjct: 133 LCDRWEREGFKSRSEANTKARSKLPFTHRGGTVTFLRHKQKMV 170

[Close]

BLAST of IVF0026891 vs. ExPASy TrEMBL
Match: A0A5D3BIG6 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00880 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.7e-26
Identity = 65/95 (68.42%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 27  ATRRVGLEKYVQANGPILIRIDFEDGKLICKDSSKLNSQIE-KENYFILDINEPLVQDYL 86
           ATRRVGLEKYVQ NGP  IRIDFED K I          ++   NYFILD+NEPLVQDYL
Sbjct: 267 ATRRVGLEKYVQENGPSRIRIDFEDRKPIYVSKEVKREIVDGLSNYFILDVNEPLVQDYL 326

Query: 87  DHEMSILYRDFCCSLHKIYKKYDSPVEARKNLDKR 121
           +HEMS+LYRDF CSLHK YKKYDSP +ARK+  KR
Sbjct: 327 EHEMSVLYRDFRCSLHKSYKKYDSPAKARKHRHKR 361

[Close]

BLAST of IVF0026891 vs. ExPASy TrEMBL
Match: A0A5A7SQC8 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold853G00910 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.7e-26
Identity = 65/95 (68.42%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 27  ATRRVGLEKYVQANGPILIRIDFEDGKLICKDSSKLNSQIE-KENYFILDINEPLVQDYL 86
           ATRRVGLEKYVQ NGP  IRIDFED K I          ++   NYFILD+NEPLVQDYL
Sbjct: 267 ATRRVGLEKYVQENGPSRIRIDFEDRKPIYVSKEVKREIVDGLSNYFILDVNEPLVQDYL 326

Query: 87  DHEMSILYRDFCCSLHKIYKKYDSPVEARKNLDKR 121
           +HEMS+LYRDF CSLHK YKKYDSP +ARK+  KR
Sbjct: 327 EHEMSVLYRDFRCSLHKSYKKYDSPAKARKHRHKR 361

[Close]

BLAST of IVF0026891 vs. ExPASy TrEMBL
Match: A0A5A7TVR8 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G001640 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.2e-10
Identity = 38/43 (88.37%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 27 ATRRVGLEKYVQANGPILIRIDFEDGKLICKDSSKLNSQIEKE 70
          ATR VGLEKYVQANGPI IRIDFED K ICKDSSKLNSQI KE
Sbjct: 36 ATRGVGLEKYVQANGPIRIRIDFEDRKPICKDSSKLNSQIGKE 78

[Close]

BLAST of IVF0026891 vs. ExPASy TrEMBL
Match: A0A5D3C2Z5 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001300 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.2e-10
Identity = 38/43 (88.37%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 27 ATRRVGLEKYVQANGPILIRIDFEDGKLICKDSSKLNSQIEKE 70
          ATR VGLEKYVQANGPI IRIDFED K ICKDSSKLNSQI KE
Sbjct: 53 ATRGVGLEKYVQANGPIRIRIDFEDRKPICKDSSKLNSQIGKE 95

[Close]

BLAST of IVF0026891 vs. NCBI nr
Match: TYJ98779.1 (hypothetical protein E5676_scaffold156G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (320), Expect = 2.53e-31
Identity = 66/100 (66.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 27  ATRRVGLEKYVQANGPILIRIDFEDGKLICKDSSKLNSQIEKE------NYFILDINEPL 86
           ATRRVGLEKYVQ NGP  IRIDFED K I      ++ ++++E      NYFILD+NEPL
Sbjct: 267 ATRRVGLEKYVQENGPSRIRIDFEDRKPIY-----VSKEVKREIVDGLSNYFILDVNEPL 326

Query: 87  VQDYLDHEMSILYRDFCCSLHKIYKKYDSPVEARKNLDKR 120
           VQDYL+HEMS+LYRDF CSLHK YKKYDSP +ARK+  KR
Sbjct: 327 VQDYLEHEMSVLYRDFRCSLHKSYKKYDSPAKARKHRHKR 361

[Close]

BLAST of IVF0026891 vs. NCBI nr
Match: KAA0032748.1 (hypothetical protein E6C27_scaffold853G00910 [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (320), Expect = 2.53e-31
Identity = 66/100 (66.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 27  ATRRVGLEKYVQANGPILIRIDFEDGKLICKDSSKLNSQIEKE------NYFILDINEPL 86
           ATRRVGLEKYVQ NGP  IRIDFED K I      ++ ++++E      NYFILD+NEPL
Sbjct: 267 ATRRVGLEKYVQENGPSRIRIDFEDRKPIY-----VSKEVKREIVDGLSNYFILDVNEPL 326

Query: 87  VQDYLDHEMSILYRDFCCSLHKIYKKYDSPVEARKNLDKR 120
           VQDYL+HEMS+LYRDF CSLHK YKKYDSP +ARK+  KR
Sbjct: 327 VQDYLEHEMSVLYRDFRCSLHKSYKKYDSPAKARKHRHKR 361

[Close]

BLAST of IVF0026891 vs. NCBI nr
Match: KAE8651942.1 (hypothetical protein Csa_006405 [Cucumis sativus])

HSP 1 Score: 120 bits (300), Expect = 1.68e-30
Identity = 69/118 (58.47%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 58  DSSKLNSQIEKENYF----ILDINEPLVQDYLDHEMSILYRDFCCSLHKIYKKYDSPVEA 117
           ++S  NS  E+E  F    I ++++PLVQDYLDHEMS+LYRDF CSLHK YKK DSP EA
Sbjct: 5   NNSNQNSIGEQEVVFVDSDIQNLDDPLVQDYLDHEMSVLYRDFHCSLHKSYKKCDSPTEA 64

Query: 118 RKNLDKR--------------------SRSEANIKARSKLPFIHLGGTATFLRHKQKM 151
           RK+ DKR                    SRSEAN KARSKLPF H GGT TFLRHKQKM
Sbjct: 65  RKHCDKRVAQDSDWARLCDRWEREGFKSRSEANTKARSKLPFTHRGGTVTFLRHKQKM 122

[Close]

BLAST of IVF0026891 vs. NCBI nr
Match: KAA0046978.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 8.84e-13
Identity = 38/43 (88.37%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 27 ATRRVGLEKYVQANGPILIRIDFEDGKLICKDSSKLNSQIEKE 69
          ATR VGLEKYVQANGPI IRIDFED K ICKDSSKLNSQI KE
Sbjct: 36 ATRGVGLEKYVQANGPIRIRIDFEDRKPICKDSSKLNSQIGKE 78

[Close]

BLAST of IVF0026891 vs. NCBI nr
Match: TYK04806.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 1.03e-12
Identity = 38/43 (88.37%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 27 ATRRVGLEKYVQANGPILIRIDFEDGKLICKDSSKLNSQIEKE 69
          ATR VGLEKYVQANGPI IRIDFED K ICKDSSKLNSQI KE
Sbjct: 53 ATRGVGLEKYVQANGPIRIRIDFEDRKPICKDSSKLNSQIGKE 95

The following BLAST results are available for this feature:

BLAST of IVF0026891 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026891 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM17	1.6e-42	61.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G294860 PE=4 SV=1	[more]
A0A5D3BIG6	3.7e-26	68.42	DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SQC8	3.7e-26	68.42	DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TVR8	2.2e-10	88.37	Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3C2Z5	2.2e-10	88.37	Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of IVF0026891 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98779.1	2.53e-31	66.00	hypothetical protein E5676_scaffold156G00880 [Cucumis melo var. makuwa]	[more]
KAA0032748.1	2.53e-31	66.00	hypothetical protein E6C27_scaffold853G00910 [Cucumis melo var. makuwa]	[more]
KAE8651942.1	1.68e-30	58.47	hypothetical protein Csa_006405 [Cucumis sativus]	[more]
KAA0046978.1	8.84e-13	88.37	formin-like protein 4 isoform X2 [Cucumis melo var. makuwa]	[more]
TYK04806.1	1.03e-12	88.37	formin-like protein 4 isoform X2 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0026891 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026891.1	IVF0026891.1	mRNA