IVF0026883 (gene) Melon (IVF77) v1

Overview
NameIVF0026883
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSKI/DACH domain-containing protein 1
Locationchr04: 2017791 .. 2018438 (+)
RNA-Seq ExpressionIVF0026883
SyntenyIVF0026883
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCAATATGGCCAACTTTCACACCTCTAAATCCGATTACGACCACCACCACCACCACCACCGCCGTCACCGCAACCACCACCACTGCAAACACCACCCAAACCACCACCAATCTCCCGGTGTTTGTTCTCTATGTTTAACCGAAAAGCTCTCGCGGATTCTCTCCACCGCCGGTTCATCGCGTAATAAAATCTCTAGTTCTCTTTCTTCTTCTTGTTCCTCTTCTTATTACTCCTCTTGTTCCTCTTCTTCTTCTTCTTGTTCTTCTTCGCCGAAGCCTTACAATTATTACAATTCGGATAATCATCGTCGTCGTAAGAAGGCTTTTGTGTTGTTTTCTGCGTCTTCGATCTTTAAGAAGAGTAAATCGATGGCGAGATTGAAACGAGGAACGACAACGGAGAGTGATTGTGGAAAGAAGAGTAATAATAATGACTTAGGGTTTTGGTCGAGGTTTCTGAATCGACCGAGACCGAAGAGGATGGAATTTCAGGATGTTTTGATGCGTTCGAGAACTGTTGTACACAGGAACGTGCATGGATGAACGTAATCGTCTTTTGAAGATTCGCTAAGATTTTATGATTATTTCTTCATTTTTTTGTTTCCACTTAAACAGATGCAATTAGATCGTTAGCGTTTGAGAAGAAG

mRNA sequence

CCCCAATATGGCCAACTTTCACACCTCTAAATCCGATTACGACCACCACCACCACCACCACCGCCGTCACCGCAACCACCACCACTGCAAACACCACCCAAACCACCACCAATCTCCCGGTGTTTGTTCTCTATGTTTAACCGAAAAGCTCTCGCGGATTCTCTCCACCGCCGGTTCATCGCGTAATAAAATCTCTAGTTCTCTTTCTTCTTCTTGTTCCTCTTCTTATTACTCCTCTTGTTCCTCTTCTTCTTCTTCTTGTTCTTCTTCGCCGAAGCCTTACAATTATTACAATTCGGATAATCATCGTCGTCGTAAGAAGGCTTTTGTGTTGTTTTCTGCGTCTTCGATCTTTAAGAAGAGTAAATCGATGGCGAGATTGAAACGAGGAACGACAACGGAGAGTGATTGTGGAAAGAAGAGTAATAATAATGACTTAGGGTTTTGGTCGAGGTTTCTGAATCGACCGAGACCGAAGAGGATGGAATTTCAGGATGTTTTGATGCGTTCGAGAACTGTTGTACACAGGAACGTGCATGGATGAACGTAATCGTCTTTTGAAGATTCGCTAAGATTTTATGATTATTTCTTCATTTTTTTGTTTCCACTTAAACAGATGCAATTAGATCGTTAGCGTTTGAGAAGAAG

Coding sequence (CDS)

ATGGCCAACTTTCACACCTCTAAATCCGATTACGACCACCACCACCACCACCACCGCCGTCACCGCAACCACCACCACTGCAAACACCACCCAAACCACCACCAATCTCCCGGTGTTTGTTCTCTATGTTTAACCGAAAAGCTCTCGCGGATTCTCTCCACCGCCGGTTCATCGCGTAATAAAATCTCTAGTTCTCTTTCTTCTTCTTGTTCCTCTTCTTATTACTCCTCTTGTTCCTCTTCTTCTTCTTCTTGTTCTTCTTCGCCGAAGCCTTACAATTATTACAATTCGGATAATCATCGTCGTCGTAAGAAGGCTTTTGTGTTGTTTTCTGCGTCTTCGATCTTTAAGAAGAGTAAATCGATGGCGAGATTGAAACGAGGAACGACAACGGAGAGTGATTGTGGAAAGAAGAGTAATAATAATGACTTAGGGTTTTGGTCGAGGTTTCTGAATCGACCGAGACCGAAGAGGATGGAATTTCAGGATGTTTTGATGCGTTCGAGAACTGTTGTACACAGGAACGTGCATGGATGA

Protein sequence

MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRNKISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSKSMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG
Homology
BLAST of IVF0026883 vs. ExPASy TrEMBL
Match: A0A1S3CQP1 (SKI/DACH domain-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC103503688 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.4e-88
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0

Query: 1   MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60
           MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN
Sbjct: 1   MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60

Query: 61  KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120
           KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK
Sbjct: 61  KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120

Query: 121 SMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG 179
           SMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG
Sbjct: 121 SMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG 178

BLAST of IVF0026883 vs. ExPASy TrEMBL
Match: A0A0A0LJL6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889870 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 5.9e-60
Identity = 142/180 (78.89%), Postives = 153/180 (85.00%), Query Frame = 0

Query: 1   MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60
           MANFH+SKSD D   H   R+  HHHC+ HPNHHQSPGVCSLCLTEKLSRI++ A SSRN
Sbjct: 1   MANFHSSKSDVD---HRRTRNHRHHHCQRHPNHHQSPGVCSLCLTEKLSRIIAPAASSRN 60

Query: 61  KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120
           KIS+SLSSS SSSYYSSCSS+SSS SSSPK Y YYNSDNH  R+K   +FSASSIFKKSK
Sbjct: 61  KISNSLSSSSSSSYYSSCSSASSSSSSSPKLYGYYNSDNHHPRRKTAFVFSASSIFKKSK 120

Query: 121 SMARLKRG-TTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHR-NVHG 179
           +MARLKRG TTTESDCGKKSNN DLGFWSRFLNR R KRMEFQ+VLMRSRTVV R NVHG
Sbjct: 121 TMARLKRGITTTESDCGKKSNNTDLGFWSRFLNRHRLKRMEFQEVLMRSRTVVQRNNVHG 177

BLAST of IVF0026883 vs. ExPASy TrEMBL
Match: A0A6J1IHL9 (uncharacterized protein LOC111476165 OS=Cucurbita maxima OX=3661 GN=LOC111476165 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 3.2e-37
Identity = 118/181 (65.19%), Postives = 130/181 (71.82%), Query Frame = 0

Query: 1   MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60
           MANFH SKSDYD          +   CK HP HHQSPGVCSLCL EKLS+I+S   +S  
Sbjct: 1   MANFHKSKSDYD----------DRRRCKRHPKHHQSPGVCSLCLAEKLSQIVS--ATSSR 60

Query: 61  KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120
           K+S SLSSSCSSSYYSS +SS SSCSS   PY  YN+D    R+KAFV FSASSIFKKS+
Sbjct: 61  KVSDSLSSSCSSSYYSS-ASSCSSCSSPNPPYG-YNTD----RRKAFV-FSASSIFKKSR 120

Query: 121 SMA---RLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVH 179
           SMA   RLKR   TESD GK SN   LGFWSRFL RPR K MEF++VLM SRTVV R+VH
Sbjct: 121 SMAFAPRLKR--ETESDSGKNSN---LGFWSRFLRRPRRKIMEFEEVLMHSRTVVQRDVH 157

BLAST of IVF0026883 vs. ExPASy TrEMBL
Match: A0A6J1FD38 (uncharacterized protein LOC111443018 OS=Cucurbita moschata OX=3662 GN=LOC111443018 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 4.1e-37
Identity = 116/181 (64.09%), Postives = 131/181 (72.38%), Query Frame = 0

Query: 1   MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60
           MANFH SKSDYD          +   CK HP HHQSPGVCSLCL EKLS+I+ST   S  
Sbjct: 1   MANFHRSKSDYD----------DRRRCKRHPKHHQSPGVCSLCLAEKLSQIVST--KSSR 60

Query: 61  KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120
           K+S SLSSSCS+SYYSS +SS SSCSS   PY  YN+D    R+KAFV FSASSIFKKS+
Sbjct: 61  KVSDSLSSSCSTSYYSS-ASSCSSCSSPNPPYG-YNTD----RRKAFV-FSASSIFKKSR 120

Query: 121 SMA---RLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVH 179
           SMA   RL+RG  TESD GK   NN+LGFWS+ L RPR K MEF++VLM SRTVV R+VH
Sbjct: 121 SMAFAPRLRRG--TESDSGK---NNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVH 157

BLAST of IVF0026883 vs. ExPASy TrEMBL
Match: A0A6J1FKF2 (uncharacterized protein LOC111446076 OS=Cucurbita moschata OX=3662 GN=LOC111446076 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 4.6e-28
Identity = 110/184 (59.78%), Postives = 122/184 (66.30%), Query Frame = 0

Query: 1   MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60
           MAN H SKSDYD      RRHR    CK HP H QSPGVCSLCLTEKLS+ILS   SSR 
Sbjct: 1   MANLHKSKSDYD----DLRRHRRCCCCKRHPKHRQSPGVCSLCLTEKLSQILSATTSSR- 60

Query: 61  KISSSLSSSCSSSY-YSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKS 120
           KIS SLSSS S SY Y S  SS SSCSS  +PY+           KA    +ASSI+KKS
Sbjct: 61  KISDSLSSSSSDSYSYYSSVSSCSSCSSPNRPYD-----------KA----TASSIYKKS 120

Query: 121 KSMA---RLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRT--VVHR 179
           +SMA   R +RG  T+SD GKKS+   LGFWSRFLNRPR KRME ++ LM SR+  VV  
Sbjct: 121 RSMAFASRFRRG--TDSDSGKKSH---LGFWSRFLNRPRRKRMELEEALMHSRSSAVVQG 159

BLAST of IVF0026883 vs. NCBI nr
Match: XP_008466205.1 (PREDICTED: SKI/DACH domain-containing protein 1 [Cucumis melo])

HSP 1 Score: 331 bits (849), Expect = 4.76e-114
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0

Query: 1   MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60
           MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN
Sbjct: 1   MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60

Query: 61  KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120
           KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK
Sbjct: 61  KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120

Query: 121 SMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG 178
           SMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG
Sbjct: 121 SMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG 178

BLAST of IVF0026883 vs. NCBI nr
Match: XP_011652564.1 (uncharacterized protein LOC105435032 [Cucumis sativus])

HSP 1 Score: 238 bits (608), Expect = 2.40e-77
Identity = 145/182 (79.67%), Postives = 155/182 (85.16%), Query Frame = 0

Query: 1   MANFHTSKSDYDHHHHHHRRHRNH--HHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSS 60
           MANFH+SKSD DH     RR RNH  HHC+ HPNHHQSPGVCSLCLTEKLSRI++ A SS
Sbjct: 1   MANFHSSKSDVDH-----RRTRNHRHHHCQRHPNHHQSPGVCSLCLTEKLSRIIAPAASS 60

Query: 61  RNKISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKK 120
           RNKIS+SLSSS SSSYYSSCSS+SSS SSSPK Y YYNSDNH  R+K   +FSASSIFKK
Sbjct: 61  RNKISNSLSSSSSSSYYSSCSSASSSSSSSPKLYGYYNSDNHHPRRKTAFVFSASSIFKK 120

Query: 121 SKSMARLKRG-TTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRN-V 178
           SK+MARLKRG TTTESDCGKKSNN DLGFWSRFLNR R KRMEFQ+VLMRSRTVV RN V
Sbjct: 121 SKTMARLKRGITTTESDCGKKSNNTDLGFWSRFLNRHRLKRMEFQEVLMRSRTVVQRNNV 177

BLAST of IVF0026883 vs. NCBI nr
Match: KAE8651391.1 (hypothetical protein Csa_002099 [Cucumis sativus])

HSP 1 Score: 238 bits (608), Expect = 1.33e-75
Identity = 145/182 (79.67%), Postives = 155/182 (85.16%), Query Frame = 0

Query: 1   MANFHTSKSDYDHHHHHHRRHRNH--HHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSS 60
           MANFH+SKSD DH     RR RNH  HHC+ HPNHHQSPGVCSLCLTEKLSRI++ A SS
Sbjct: 125 MANFHSSKSDVDH-----RRTRNHRHHHCQRHPNHHQSPGVCSLCLTEKLSRIIAPAASS 184

Query: 61  RNKISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKK 120
           RNKIS+SLSSS SSSYYSSCSS+SSS SSSPK Y YYNSDNH  R+K   +FSASSIFKK
Sbjct: 185 RNKISNSLSSSSSSSYYSSCSSASSSSSSSPKLYGYYNSDNHHPRRKTAFVFSASSIFKK 244

Query: 121 SKSMARLKRG-TTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRN-V 178
           SK+MARLKRG TTTESDCGKKSNN DLGFWSRFLNR R KRMEFQ+VLMRSRTVV RN V
Sbjct: 245 SKTMARLKRGITTTESDCGKKSNNTDLGFWSRFLNRHRLKRMEFQEVLMRSRTVVQRNNV 301

BLAST of IVF0026883 vs. NCBI nr
Match: XP_038899400.1 (uncharacterized protein LOC120086706 [Benincasa hispida])

HSP 1 Score: 174 bits (442), Expect = 2.86e-52
Identity = 132/183 (72.13%), Postives = 137/183 (74.86%), Query Frame = 0

Query: 1   MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILS--TAGSS 60
           MANFH SKSDYDHH     R RNH  CK HP HHQSPGVCSLCLTEKLSRILS  T  SS
Sbjct: 1   MANFHKSKSDYDHH-----RRRNHC-CKRHPKHHQSPGVCSLCLTEKLSRILSAATTTSS 60

Query: 61  RNKISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKK 120
             K S SLSSS SSSYYSS SSSSS CS SP  Y +YN+D   RRK AFV FSASSIFKK
Sbjct: 61  SRKTSDSLSSSYSSSYYSSASSSSS-CS-SPNLY-HYNTD---RRKTAFV-FSASSIFKK 120

Query: 121 SKSMARLK---RGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRN 178
           SKSMA +    RG T ES+  KKSN   LGFWSRFLNRPR KRMEFQDVLM SRT+V RN
Sbjct: 121 SKSMAAIVPRLRGRT-ESESEKKSN---LGFWSRFLNRPRRKRMEFQDVLMHSRTIVERN 166

BLAST of IVF0026883 vs. NCBI nr
Match: KAG7024556.1 (hypothetical protein SDJN02_13373, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162 bits (409), Expect = 2.19e-47
Identity = 119/181 (65.75%), Postives = 131/181 (72.38%), Query Frame = 0

Query: 1   MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60
           MANFH SKSDYD       R R    CK HP HHQSPGVCSLCL EKLS+I+ST  S   
Sbjct: 1   MANFHRSKSDYD------DRRR----CKRHPKHHQSPGVCSLCLAEKLSQIVSTKSS--R 60

Query: 61  KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120
           K+S SLSSSCSSSYYSS SS SS CSS   PY  YN+D    R+KAFV FSASSIFKKS+
Sbjct: 61  KVSDSLSSSCSSSYYSSASSCSS-CSSPNPPYG-YNTD----RRKAFV-FSASSIFKKSR 120

Query: 121 SMA---RLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVH 178
           SMA   RL+RGT  ESD GK   NN+LGFWS+ L RPR K MEF++VLM SRTVV R+VH
Sbjct: 121 SMAFAPRLRRGT--ESDSGK---NNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVH 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3CQP11.4e-88100.00SKI/DACH domain-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC103503688 PE=... [more]
A0A0A0LJL65.9e-6078.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889870 PE=4 SV=1[more]
A0A6J1IHL93.2e-3765.19uncharacterized protein LOC111476165 OS=Cucurbita maxima OX=3661 GN=LOC111476165... [more]
A0A6J1FD384.1e-3764.09uncharacterized protein LOC111443018 OS=Cucurbita moschata OX=3662 GN=LOC1114430... [more]
A0A6J1FKF24.6e-2859.78uncharacterized protein LOC111446076 OS=Cucurbita moschata OX=3662 GN=LOC1114460... [more]
Match NameE-valueIdentityDescription
XP_008466205.14.76e-114100.00PREDICTED: SKI/DACH domain-containing protein 1 [Cucumis melo][more]
XP_011652564.12.40e-7779.67uncharacterized protein LOC105435032 [Cucumis sativus][more]
KAE8651391.11.33e-7579.67hypothetical protein Csa_002099 [Cucumis sativus][more]
XP_038899400.12.86e-5272.13uncharacterized protein LOC120086706 [Benincasa hispida][more]
KAG7024556.12.19e-4765.75hypothetical protein SDJN02_13373, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..32
NoneNo IPR availablePANTHERPTHR34046:SF7OS06G0218800 PROTEINcoord: 2..174
NoneNo IPR availablePANTHERPTHR34046OS06G0218800 PROTEINcoord: 2..174

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0026883.2IVF0026883.2mRNA