IVF0026838 (gene) Melon (IVF77) v1

Overview
NameIVF0026838
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr12: 13145977 .. 13146628 (-)
RNA-Seq ExpressionIVF0026838
SyntenyIVF0026838
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACCTCATCGCGTGCCCCGTGGCATGTATGGACTAAGAAGGAGGAGGACACTCTTGTAGAGTGTTTAGTGGATTTGGTTGTCATGGAGGATGGAAATCCGACAATGGTACGTTCCGACAAGATTACCTGGCACAACTGGTATGCATGATGGCTGAGAAATTACCAAGATGTCAGGTCCGTGCAACCACTGTAATCGACTGCAGAATAAAGATACTGAAGTGAACATTCCAGGCCATGCAGAAATGCAGGGGCTAACGTGCAGTGAATTTAGTTGGAACGACGACGCAAAATGCATAATTGCGGAGAAGGAACTCTTCGATAACTAGGTTAGGGTAAGGAAAATAATATACACGTCACACTACTTGCGCAATGTATATTTACTTCACAAAATTTCAATCCCTACTTAATAGGGGTTCTCTTTAAATTTTTTGAAGTCGCATCCAGCAATGAAAAGGCTCTTTAACAAACTGTTTCCCTATTACAACAAACTTAAATATGTGTTCGGTCGCGATAGGGCGACGAGTCACTTCGCTGAGACATTCGTCAACGTGGGGTCTAACAAGTCTGGTGGGTATGAGGGTTTTGACATGTCGGATGGGAACGAGGAGTTCCCATCCATGTACAGCCAGGATATTGACATGTCTTAG

mRNA sequence

ATGGCAACCTCATCGCGTGCCCCGTGGCATGTATGGACTAAGAAGGAGGAGGACACTCTTGTAGAGTGTTTAGTGGATTTGGTTGTCATGGAGGATGGAAATCCGACAATGTCGCATCCAGCAATGAAAAGGCTCTTTAACAAACTGTTTCCCTATTACAACAAACTTAAATATGTGTTCGGTCGCGATAGGGCGACGAGTCACTTCGCTGAGACATTCGTCAACGTGGGGTCTAACAAGTCTGGTGGGTATGAGGGTTTTGACATGTCGGATGGGAACGAGGAGTTCCCATCCATGTACAGCCAGGATATTGACATGTCTTAG

Coding sequence (CDS)

ATGGCAACCTCATCGCGTGCCCCGTGGCATGTATGGACTAAGAAGGAGGAGGACACTCTTGTAGAGTGTTTAGTGGATTTGGTTGTCATGGAGGATGGAAATCCGACAATGTCGCATCCAGCAATGAAAAGGCTCTTTAACAAACTGTTTCCCTATTACAACAAACTTAAATATGTGTTCGGTCGCGATAGGGCGACGAGTCACTTCGCTGAGACATTCGTCAACGTGGGGTCTAACAAGTCTGGTGGGTATGAGGGTTTTGACATGTCGGATGGGAACGAGGAGTTCCCATCCATGTACAGCCAGGATATTGACATGTCTTAG

Protein sequence

MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMYSQDIDMS
Homology
BLAST of IVF0026838 vs. ExPASy TrEMBL
Match: A0A5D3E4X9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001200 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-34
Identity = 81/107 (75.70%), Postives = 85/107 (79.44%), Query Frame = 0

Query: 1   MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMSHPAMKRLFNKLFPYYNKLKYVF 60
           MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTM                +K+ +  
Sbjct: 1   MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMVRS-------------DKITW-- 60

Query: 61  GRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMYSQDIDMS 108
             + ATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMYSQDIDMS
Sbjct: 61  -HNWATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMYSQDIDMS 91

BLAST of IVF0026838 vs. ExPASy TrEMBL
Match: A0A5A7TB06 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00390 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-31
Identity = 74/118 (62.71%), Postives = 90/118 (76.27%), Query Frame = 0

Query: 1   MATSSRAPWHVWTKKEEDTLVECLVDLVVM---EDGNPT--------MSHPAMKRLFNKL 60
           M+TS+RAP HVWTK+EEDTLVECL++LV+M   +  N T        +SHPA K L NKL
Sbjct: 89  MSTSNRAPRHVWTKEEEDTLVECLMELVLMGGWKSDNGTFRPGYLAQLSHPAAKGLLNKL 148

Query: 61  FPYYNKLKYVFGRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMYSQDIDMS 108
           FPYY++  YVFGRDRAT   A+TFV+VGSN+ GGY+ FDM DGNEEFP +YSQ ID+S
Sbjct: 149 FPYYDECTYVFGRDRATGRLAKTFVDVGSNEPGGYDIFDMGDGNEEFPIVYSQRIDLS 206

BLAST of IVF0026838 vs. ExPASy TrEMBL
Match: A0A5D3D4Q6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00280 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.6e-30
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 0

Query: 1   MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMSHPAMKRLFNKLFPYYNKLKYVF 60
           M+TS+RAP HVWT KEE T+VECL++LV M D NP MSHPA K L NK FPYY++L YVF
Sbjct: 219 MSTSTRAPRHVWT-KEEGTIVECLMELVSMGDENPIMSHPAAKGLLNKPFPYYDELIYVF 278

Query: 61  GRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMYSQDIDMS 108
             DRAT  F E F +VGSN+  GY+ FD++DGNEEFP +YSQ ID+S
Sbjct: 279 DCDRATGRFTEIFADVGSNEPDGYDEFDITDGNEEFPLVYSQGIDLS 324

BLAST of IVF0026838 vs. ExPASy TrEMBL
Match: A0A5A7UWT1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002690 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.6e-30
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 0

Query: 1   MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMSHPAMKRLFNKLFPYYNKLKYVF 60
           M+TS+RAP HVWT KEE T+VECL++LV M D NP MSHPA K L NK FPYY++L YVF
Sbjct: 1   MSTSTRAPRHVWT-KEEGTIVECLMELVSMGDENPIMSHPAAKGLLNKPFPYYDELIYVF 60

Query: 61  GRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMYSQDIDMS 108
             DRAT  F E F +VGSN+  GY+ FD++DGNEEFP +YSQ ID+S
Sbjct: 61  DCDRATGRFTEIFADVGSNEPDGYDEFDITDGNEEFPLVYSQGIDLS 106

BLAST of IVF0026838 vs. ExPASy TrEMBL
Match: A0A5D3DLD9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00010 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 8.6e-30
Identity = 73/119 (61.34%), Postives = 88/119 (73.95%), Query Frame = 0

Query: 1   MATSSRAPWHVWTKKEEDTLVECLVDLVVM-----EDGN------PTMSHPAMKRLFNKL 60
           M TS+RAP HVWTK++E TLVEC ++LV M     ++G         +SHPA KRL NK 
Sbjct: 1   MLTSNRAPRHVWTKEKEGTLVECFMELVSMGGWKSDNGMFRPGYLAQLSHPAAKRLLNKP 60

Query: 61  FPYYNKLKYVFGRDRATSHFAETFVNVGSNK-SGGYEGFDMSDGNEEFPSMYSQDIDMS 108
           FPYY++L YVFGR+RAT  FAETFVNVGSN+  GGY+ FDM DGNEEFP +YSQ ID+S
Sbjct: 61  FPYYDELTYVFGRNRATDRFAETFVNVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLS 119

BLAST of IVF0026838 vs. NCBI nr
Match: KAA0035633.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK30909.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (388), Expect = 2.92e-46
Identity = 81/107 (75.70%), Postives = 85/107 (79.44%), Query Frame = 0

Query: 1   MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMSHPAMKRLFNKLFPYYNKLKYVF 60
           MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTM                +K+ +  
Sbjct: 1   MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMVRS-------------DKITW-- 60

Query: 61  GRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMYSQDIDMS 107
             + ATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMYSQDIDMS
Sbjct: 61  -HNWATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMYSQDIDMS 91

BLAST of IVF0026838 vs. NCBI nr
Match: KAA0060443.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (347), Expect = 1.91e-39
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = 0

Query: 1   MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMSHPAMKRLFNKLFPYYNKLKYVF 60
           M+TS+RAP HVWTK EE T+VECL++LV M D NP MSHPA K L NK FPYY++L YVF
Sbjct: 1   MSTSTRAPRHVWTK-EEGTIVECLMELVSMGDENPIMSHPAAKGLLNKPFPYYDELIYVF 60

Query: 61  GRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMYSQDIDMS 107
             DRAT  F E F +VGSN+  GY+ FD++DGNEEFP +YSQ ID+S
Sbjct: 61  DCDRATGRFTEIFADVGSNEPDGYDEFDITDGNEEFPLVYSQGIDLS 106

BLAST of IVF0026838 vs. NCBI nr
Match: KAA0040490.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK23472.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (361), Expect = 2.74e-39
Identity = 74/118 (62.71%), Postives = 90/118 (76.27%), Query Frame = 0

Query: 1   MATSSRAPWHVWTKKEEDTLVECLVDLVVM---EDGNPT--------MSHPAMKRLFNKL 60
           M+TS+RAP HVWTK+EEDTLVECL++LV+M   +  N T        +SHPA K L NKL
Sbjct: 89  MSTSNRAPRHVWTKEEEDTLVECLMELVLMGGWKSDNGTFRPGYLAQLSHPAAKGLLNKL 148

Query: 61  FPYYNKLKYVFGRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMYSQDIDMS 107
           FPYY++  YVFGRDRAT   A+TFV+VGSN+ GGY+ FDM DGNEEFP +YSQ ID+S
Sbjct: 149 FPYYDECTYVFGRDRATGRLAKTFVDVGSNEPGGYDIFDMGDGNEEFPIVYSQRIDLS 206

BLAST of IVF0026838 vs. NCBI nr
Match: KAA0055621.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24447.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (345), Expect = 5.88e-39
Identity = 73/119 (61.34%), Postives = 88/119 (73.95%), Query Frame = 0

Query: 1   MATSSRAPWHVWTKKEEDTLVECLVDLVVM-----EDGN------PTMSHPAMKRLFNKL 60
           M TS+RAP HVWTK++E TLVEC ++LV M     ++G         +SHPA KRL NK 
Sbjct: 1   MLTSNRAPRHVWTKEKEGTLVECFMELVSMGGWKSDNGMFRPGYLAQLSHPAAKRLLNKP 60

Query: 61  FPYYNKLKYVFGRDRATSHFAETFVNVGSNK-SGGYEGFDMSDGNEEFPSMYSQDIDMS 107
           FPYY++L YVFGR+RAT  FAETFVNVGSN+  GGY+ FDM DGNEEFP +YSQ ID+S
Sbjct: 61  FPYYDELTYVFGRNRATDRFAETFVNVGSNEPGGGYDRFDMGDGNEEFPPVYSQGIDLS 119

BLAST of IVF0026838 vs. NCBI nr
Match: KAA0044982.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 132 bits (333), Expect = 9.24e-38
Identity = 68/101 (67.33%), Postives = 80/101 (79.21%), Query Frame = 0

Query: 1   MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMSHPAMKRLFNKLFPYYNKLKYVF 60
           MAT SRA  HVWTK+EEDTL+ECLV+LV + DGN  MSHPA   L NK F YY+KL Y+F
Sbjct: 1   MATLSRALNHVWTKEEEDTLIECLVELVSIGDGNLIMSHPAANGLLNKPFFYYDKLVYMF 60

Query: 61  GRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMYS 101
           GRDRAT  F +TF++VGSN+   +EGFDMSDGNE FPS+YS
Sbjct: 61  GRDRATDRFTKTFIDVGSNELTEHEGFDMSDGNE-FPSVYS 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E4X91.2e-3475.70Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TB061.2e-3162.71Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D4Q66.6e-3064.49Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UWT16.6e-3064.49Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DLD98.6e-3061.34Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0035633.12.92e-4675.70retrotransposon protein [Cucumis melo var. makuwa] >TYK30909.1 retrotransposon p... [more]
KAA0060443.11.91e-3964.49retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0040490.12.74e-3962.71retrotransposon protein [Cucumis melo var. makuwa] >TYK23472.1 retrotransposon p... [more]
KAA0055621.15.88e-3961.34retrotransposon protein [Cucumis melo var. makuwa] >TYK24447.1 retrotransposon p... [more]
KAA0044982.19.24e-3867.33transposase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0026838.1IVF0026838.1mRNA