IVF0026806 (gene) Melon (IVF77) v1

Overview


Name	IVF0026806
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr12: 5568202 .. 5568642 (+)
RNA-Seq Expression	IVF0026806
Synteny	IVF0026806

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGCTGTTGATAAACTTAATGGCAATAATTATGCATCTTGGAAAAATACTATCAACACTGTGCTAATCATCGATGACCTTATATTTGTCCTAGTTGAGGAGTGTCCTCAAGTCCCAGCTGCTAATGCAACTCGAACTGTTCGAGAAGCATATGAGCGCTGGGCCAAGGCAAATGAAAAAGCCCGAGCATACATCTTGGCAAGCTTATCTAAAGTATTGGCCAAGAAACATGAATCAATGCTCACTACTCGTGAGATCATGGACTCCTTGCAGGAGATGTTTGGTCAAGCCTCTTATCAGATCAAGCATGATGCTCTGAAATACATTTATAATGCCCGTATGAATGAGGGAGCCTCAGTACGAGAACATGTTCTCAATATGATGGTTCATTTCAACGTGGCAGAAATGAATGGGGCCGTCATCGATGAAGCCAGTTAG

mRNA sequence

ATGCTGGCTGTTGATAAACTTAATGGCAATAATTATGCATCTTGGAAAAATACTATCAACACTGTGCTAATCATCGATGACCTTATATTTGTCCTAGTTGAGGAGTGTCCTCAAGTCCCAGCTGCTAATGCAACTCGAACTGTTCGAGAAGCATATGAGCGCTGGGCCAAGGCAAATGAAAAAGCCCGAGCATACATCTTGGCAAGCTTATCTAAAGTATTGGCCAAGAAACATGAATCAATGCTCACTACTCGTGAGATCATGGACTCCTTGCAGGAGATGTTTGGTCAAGCCTCTTATCAGATCAAGCATGATGCTCTGAAATACATTTATAATGCCCGTATGAATGAGGGAGCCTCAGTACGAGAACATGTTCTCAATATGATGGTTCATTTCAACGTGGCAGAAATGAATGGGGCCGTCATCGATGAAGCCAGTTAG

Coding sequence (CDS)

ATGCTGGCTGTTGATAAACTTAATGGCAATAATTATGCATCTTGGAAAAATACTATCAACACTGTGCTAATCATCGATGACCTTATATTTGTCCTAGTTGAGGAGTGTCCTCAAGTCCCAGCTGCTAATGCAACTCGAACTGTTCGAGAAGCATATGAGCGCTGGGCCAAGGCAAATGAAAAAGCCCGAGCATACATCTTGGCAAGCTTATCTAAAGTATTGGCCAAGAAACATGAATCAATGCTCACTACTCGTGAGATCATGGACTCCTTGCAGGAGATGTTTGGTCAAGCCTCTTATCAGATCAAGCATGATGCTCTGAAATACATTTATAATGCCCGTATGAATGAGGGAGCCTCAGTACGAGAACATGTTCTCAATATGATGGTTCATTTCAACGTGGCAGAAATGAATGGGGCCGTCATCGATGAAGCCAGTTAG

Protein sequence

MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

Homology

[Close]

BLAST of IVF0026806 vs. ExPASy TrEMBL
Match: A0A5A7UBR0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00440 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.3e-73
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANE 60
           MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANE
Sbjct: 8   MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANE 67

Query: 61  KARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 120
           KARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS
Sbjct: 68  KARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 127

Query: 121 VREHVLNMMVHFNVAEMNGAVIDEAS 147
           VREHVLNMMVHFNVAEMNGAVIDEAS
Sbjct: 128 VREHVLNMMVHFNVAEMNGAVIDEAS 153

[Close]

BLAST of IVF0026806 vs. ExPASy TrEMBL
Match: A0A1S3CM79 (uncharacterized protein LOC103502537 OS=Cucumis melo OX=3656 GN=LOC103502537 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.3e-73
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANE 60
           MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANE
Sbjct: 7   MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANE 66

Query: 61  KARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 120
           KARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS
Sbjct: 67  KARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 126

Query: 121 VREHVLNMMVHFNVAEMNGAVIDEAS 147
           VREHVLNMMVHFNVAEMNGAVIDEAS
Sbjct: 127 VREHVLNMMVHFNVAEMNGAVIDEAS 152

[Close]

BLAST of IVF0026806 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.0e-70
Identity = 141/146 (96.58%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANE 60
           MLA DKLNGNNYASWKNTINTVLIIDDL FVLVEECPQVPAANATRTVRE YERWAKANE
Sbjct: 8   MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANE 67

Query: 61  KARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 120
           KARAYILASLS+VLAKKHESMLT REIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS
Sbjct: 68  KARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 127

Query: 121 VREHVLNMMVHFNVAEMNGAVIDEAS 147
           VREHVLNMMVHFNVAEMNGAVIDEAS
Sbjct: 128 VREHVLNMMVHFNVAEMNGAVIDEAS 153

[Close]

BLAST of IVF0026806 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.0e-70
Identity = 141/146 (96.58%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANE 60
           MLA DKLNGNNYASWKNTINTVLIIDDL FVLVEECPQVPAANATRTVRE YERWAKANE
Sbjct: 8   MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANE 67

Query: 61  KARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 120
           KARAYILASLS+VLAKKHESMLT REIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS
Sbjct: 68  KARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 127

Query: 121 VREHVLNMMVHFNVAEMNGAVIDEAS 147
           VREHVLNMMVHFNVAEMNGAVIDEAS
Sbjct: 128 VREHVLNMMVHFNVAEMNGAVIDEAS 153

[Close]

BLAST of IVF0026806 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.0e-70
Identity = 141/146 (96.58%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANE 60
           MLA DKLNGNNYASWKNTINTVLIIDDL FVLVEECPQVPAANATRTVRE YERWAKANE
Sbjct: 8   MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANE 67

Query: 61  KARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 120
           KARAYILASLS+VLAKKHESMLT REIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS
Sbjct: 68  KARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 127

Query: 121 VREHVLNMMVHFNVAEMNGAVIDEAS 147
           VREHVLNMMVHFNVAEMNGAVIDEAS
Sbjct: 128 VREHVLNMMVHFNVAEMNGAVIDEAS 153

[Close]

BLAST of IVF0026806 vs. NCBI nr
Match: XP_008464721.1 (PREDICTED: uncharacterized protein LOC103502537 [Cucumis melo])

HSP 1 Score: 286 bits (731), Expect = 5.16e-97
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANE 60
           MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANE
Sbjct: 7   MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANE 66

Query: 61  KARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 120
           KARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS
Sbjct: 67  KARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 126

Query: 121 VREHVLNMMVHFNVAEMNGAVIDEAS 146
           VREHVLNMMVHFNVAEMNGAVIDEAS
Sbjct: 127 VREHVLNMMVHFNVAEMNGAVIDEAS 152

[Close]

BLAST of IVF0026806 vs. NCBI nr
Match: KAA0051847.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK21397.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 286 bits (731), Expect = 5.34e-97
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANE 60
           MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANE
Sbjct: 8   MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANE 67

Query: 61  KARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 120
           KARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS
Sbjct: 68  KARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 127

Query: 121 VREHVLNMMVHFNVAEMNGAVIDEAS 146
           VREHVLNMMVHFNVAEMNGAVIDEAS
Sbjct: 128 VREHVLNMMVHFNVAEMNGAVIDEAS 153

[Close]

BLAST of IVF0026806 vs. NCBI nr
Match: TYK07761.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 275 bits (702), Expect = 2.36e-92
Identity = 140/145 (96.55%), Postives = 141/145 (97.24%), Query Frame = 0


Query: 1   MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANE 60
           MLA DKLNGNNYASWKNTINTVLIIDDL FVLVEECPQVPAANATRTVRE YERWAKANE
Sbjct: 8   MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANE 67

Query: 61  KARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 120
           KARAYILASLS+VLAKKHESMLT REIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS
Sbjct: 68  KARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 127

Query: 121 VREHVLNMMVHFNVAEMNGAVIDEA 145
           VREHVLNMMVHFNVAEMNGAVIDEA
Sbjct: 128 VREHVLNMMVHFNVAEMNGAVIDEA 152

[Close]

BLAST of IVF0026806 vs. NCBI nr
Match: KAA0054432.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14604.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 271 bits (692), Expect = 1.02e-88
Identity = 138/146 (94.52%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANE 60
           MLA DKLNGNNYASWKNTINTVLIIDDL FVLVEECPQVPAANATRTVRE YERWAKAN+
Sbjct: 8   MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANK 67

Query: 61  KARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 120
           KARAYILASLS+VLAKKHESMLT REIMDSLQEMF QASYQIKHDALKYIYNARMNEGAS
Sbjct: 68  KARAYILASLSEVLAKKHESMLTAREIMDSLQEMFSQASYQIKHDALKYIYNARMNEGAS 127

Query: 121 VREHVLNMMVHFNVAEMNGAVIDEAS 146
           VREHVLNMMVHFNV EMNGAVIDEAS
Sbjct: 128 VREHVLNMMVHFNVVEMNGAVIDEAS 153

[Close]

BLAST of IVF0026806 vs. NCBI nr
Match: KAA0050670.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 271 bits (694), Expect = 3.30e-85
Identity = 138/146 (94.52%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANE 60
           MLA DKLNGNNYASWKNTINTVLIIDDL FVLVEECPQVPAANATRT+RE YERWAKANE
Sbjct: 8   MLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTIREPYERWAKANE 67

Query: 61  KARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 120
           KARAYILAS S+VLAKKHESMLT REIMDSLQEMFGQASYQIKHDAL YIYNARMNEGAS
Sbjct: 68  KARAYILASFSEVLAKKHESMLTGREIMDSLQEMFGQASYQIKHDALNYIYNARMNEGAS 127

Query: 121 VREHVLNMMVHFNVAEMNGAVIDEAS 146
           VREHVLNMMVHFNVAEMNGAVIDEAS
Sbjct: 128 VREHVLNMMVHFNVAEMNGAVIDEAS 153

The following BLAST results are available for this feature:

BLAST of IVF0026806 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026806 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UBR0	1.3e-73	100.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G0044...	[more]
A0A1S3CM79	1.3e-73	100.00	uncharacterized protein LOC103502537 OS=Cucumis melo OX=3656 GN=LOC103502537 PE=...	[more]
A0A5A7SMH8	1.0e-70	96.58	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	1.0e-70	96.58	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7TU93	1.0e-70	96.58	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]

BLAST of IVF0026806 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464721.1	5.16e-97	100.00	PREDICTED: uncharacterized protein LOC103502537 [Cucumis melo]	[more]
KAA0051847.1	5.34e-97	100.00	gag/pol protein [Cucumis melo var. makuwa] >TYK21397.1 gag/pol protein [Cucumis ...	[more]
TYK07761.1	2.36e-92	96.55	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054432.1	1.02e-88	94.52	gag/pol protein [Cucumis melo var. makuwa] >TYK14604.1 gag/pol protein [Cucumis ...	[more]
KAA0050670.1	3.30e-85	94.52	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0026806 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 55..144 e-value: 3.6E-9 score: 36.5
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 11..145
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 11..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026806.2	IVF0026806.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding