IVF0026772 (gene) Melon (IVF77) v1

Overview


Name	IVF0026772
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA repair protein XRCC4
Location	chr01: 1547615 .. 1551686 (+)
RNA-Seq Expression	IVF0026772
Synteny	IVF0026772

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCAATCAGGCACACATGCCTGAAGCTTGAAGTACCAACCAACGCCCAGCCGGACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCACCGTTTCGATCTCTCCATCACCGACGGCCTCCACGCTTGGACGTGCCATGGTTCCATTTCTTAAACTTCCACTCAATTTAACTTTGTTTAGTTTCTCTTCTATTCCGCTCATCTTTTGAATTTGTTCTCGTATTTTCTTTTTGTTATTACCCCATTTTGCCTGCGACAGCGACGGAGGATGAGGTTCGATTGCGCGCTGCACAATGGGACCAAGAACCGTCGGACTATGTGGCATTGGCCGAGCGCTATTTAGGGTTTCAACAGCCTGGTTCGATCTATGGCTTTGCCGATGCTGGAAATGGGTACAAGAGGGTTCGTACTTACTCCCTTTCGTTTTCTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTGCTCCCTTAGTCGATACTGATGAGGTAATAGAAGATTTTTGGGTATTGTTCGTTGTATAGGTACTAGGAAATAGACGATCGGCTCACAATTTGGTTTTGATTTCGCCTCTTTGAATGCCTTCATTGTTGTTAAAGAGTAAATTGAATGGAAATCTGGATTCTGGCTGAAAAGTTTTAGCTTCCAGGTCTACTAGTGAGTTAACAGCAATGTGGTAATGGAGTATTGAAAAACAATATTTTAAAAAAATGCAGGTTCAAAACAACCTCTACAAGCTTATATGTGATACCTAAGACAAGGGAAGAACTTTTGTTTATGAAGCATAAAATTGGAGAATAAAGACATTTTTGAGAGATTCTTAAAAGAGTTTGATGTTCTTTTCTTATTTCTTTAAGATGGGAAACTAAAAAGAGAGTACCTTTAAGATGAAGTGAAGTGACATGTGTGCTATGTGCTGAGGCACTTGCAACAAAAGGATCAACTAAACATATACGAGAATAAAGTACACAATTGGTTGCTTAGTTTGGTTGGTGTCTATTTGGGGGTTTCTAAAGGACACTTTAGACCCTTATGTTTAGGAAATGGATCGACATGGCCCTTGAACATCTTTGACCATTAATAACTAACGTTAAAATGATTTGGCGGTTAAATTATAAACAACATTTTCTAATATGGGGAGATAGTTTAATTTAATAATATATTTTTATGACTAAAAATACTCTTTCCACGTTGCTTCCTCCTATGGTGAATCTTCCCATTGCTCGCCAATGCCCTTCTTATGCATGATTGAAGTGTTTATTGTGAAATCTCATGGACCAAATAGATACTAACCTCATATTTTAGGATCCAAAAGTGTAGTTTGTCTAGTATACTATTATATCAGGTTAAGCTTGGTTGAAATTTTTAAATCTACTATAAATTTAGGAATTCAATTATAATCATCAATCTATTTGGGTGAATTTGTTGGTTTCGGTATCTCATATACCAAGTAGGCAACTCTCTGTAGTTTAGGGGTCAAATGTGTAGTTTGTCTATACTCTATTTCACCAGGTTGTGCTTGGTTAAAATTTTTCAGTCTAGTTTAAATTTAAGAATTTGATTATAATCAACAGTCTCTTTGGGTGAACTTGGTGGTTTTGATACAAGAATATTGTGAATTTGGGAGAGGAATTCAGTTATCTAAATATTAAAGTTTGGGTTTTCATTTTAACTTTGGAACATATTGATTGGCACTTTGTACTGGTTCTTATGCAGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACAACTACAGCAGAAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGTAATACTATGCCTCCTTGTTGTGTTTACAATGTTTTAGATTTTCTCAAGGTTACTTCTATTCAGCTATTAGCCATACTTCTCATTAATTTTTTTAGCATATTTTTCAATGATTAATAGTTGCTTATTGGTGATTTACATGAATGGATTAACAAGATTGACAATTTCCCCTATCCAAGAAAAGGAAAATTACTGATGGTCTCCTATTTCATGACCATTGGATTGGAGTTTTTGTTCCAGCTTTGTTTTTCTACATCGAAGGACTTTAAAGTTGAATAGCTCTAGCACATGACTTGTAAAACAATGATCACAGCCCTCTGTTTGCTTCTATTATCTGATTGCTGTCTGAACATGTGGATAGTTATTTATCTTTTCCAAGTTTTGATATGGTGTCAGAAACATTAGTTACCATGTAAATTCCGAAGTACATTAATTTATTAAAAAGAGTCTGATTTGAAAGTCTATGAACTTCAAGTCATTCTTTATTTGAAATGTTGATTTTGTCATTCTGATTTCCTCTCTGTCACACTATGGCCTTTGAGTTTTTTCTTAAAGATGTTCAGTTGTCAACTTTTTCTTATAACTTATGCCTGCTTTATTTTTGTATGAATAGGAAGAGGTTGTGAGAAAAACTCAATCAGTTGAGAGGCTGAAGGCAGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAAGTGGAGTTTGAAACTGCAATATATGCAAAGGTACGGGAAATTTCATATACTTGTGATTTGAACTTCACCCTATCTGTTTTCTTCTTTGTGATCTTGGTCAGTTTGAGACCATTCTGAATTAACTCTTCTTCAGAAATCACGCTACATTTAGCTTCAAAAGTGTAACATGATGCAATAAGTACATTTTCATTTTATCAATGCAGAAAATTTTGTTTCTCGTATTTGAAAGTGTAACATGATGTCTTTGTGGTAAGAAAAACTATTGTTCACATAATTGTGTTCTCTTTATAACATAGTTATATTAACCCAGACTCTAAAGTATCGGAAGAATAAATACTTATTCAATCCTGCAATCAGGAAATATTTCCTTTGGCATTAATCTACTTGTCAGATGTGTTTGTGCTTCATTGATCAAGGTCGGTAGGCTCCAGAAGTTGGTAAATTGGTATCGGGTATTCTGTTTCGATTTTCTCGTTGGAAATTCCCATTTTTGATTCCTTAGTGAAATATAGGATGGAAAAGTTATTTCTTGCTACCCCTATCATAACATGCATTATGGGGAATTTCTTCGATATATTCATAGATTTAGTGACGATGTCAATGTTCCCAGCCCAACACGACTGGGATTGAACTGGTTTATTTGCTTGAGACTTGAGCGAGAGATACAATGCCAAAGATTGCTGATTTGCCCGACTCCTATTTCACATCTGATCAAAACACAAGTTAATTGTATCGATACTGCACTCTCTTTCACATGTGTGGCTGATAGGGTTTGAGGGTTACAAAAAGGATACCCAACACGCCTTCGCTATTTGGAGGGAGCCTACTCATATCTTCGTGATAAATATTTTGCAGAACGGATGTTGGTTAGAGCTTAAATTTATATTTGCATCAACTTCTATATGCAGTACATATCAAAATGCAATATCAATGAGAGCATAAAAGTAATTCCCAAATCTCTGTGAGCTCATAATCTTTAATGAATGTTTCATCTATTTGTTAGGCCTCCAATTGTGACTACTTATATTAGAAGGGGTTAGAAAGGAAATGAGTATGAAGCCACTCGTTAGTTGGTTAGAGGTTAGTTTGTTTTGCTTTTTTGTTTAGGCTTGTGTATGGCAGAAGTCTATTAGTAGGTTGTCTTTTGGATGTTGGTTTATCTTTGGCATTTTGTAATAGAGCCATGGTTCTTAGGGAGAGGTACCCGCCTTGAATTGACGGTTAGCTACTTTGTAATTGTTATTTGCAATCTATACTATCACCGGTGAGACCTGGAGTCTTTACACTACGCACCTCCTATTTCTTATTTGAATCTTTAAATGTCTTTTTCATTGCTTCCAGTTCTGAATGTCTTGAATGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCGAAACAAACCACTACCGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGATCTTTTGACGATGAAAGCGATGCAGAAAAGAACTGACAGAGTCGTATGA

mRNA sequence

ATGGACGCAATCAGGCACACATGCCTGAAGCTTGAAGTACCAACCAACGCCCAGCCGGACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCACCGTTTCGATCTCTCCATCACCGACGGCCTCCACGCTTGGACGTGCCATGCGACGGAGGATGAGGTTCGATTGCGCGCTGCACAATGGGACCAAGAACCGTCGGACTATGTGGCATTGGCCGAGCGCTATTTAGGGTTTCAACAGCCTGGTTCGATCTATGGCTTTGCCGATGCTGGAAATGGGTACAAGAGGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACAACTACAGCAGAAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAACTCAATCAGTTGAGAGGCTGAAGGCAGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAAGTGGAGTTTGAAACTGCAATATATGCAAAGGTACGGGAAATTTCATATACTTTTCTGAATGTCTTGAATGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCGAAACAAACCACTACCGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGATCTTTTGACGATGAAAGCGATGCAGAAAAGAACTGACAGAGTCGTATGA

Coding sequence (CDS)

ATGGACGCAATCAGGCACACATGCCTGAAGCTTGAAGTACCAACCAACGCCCAGCCGGACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCACCGTTTCGATCTCTCCATCACCGACGGCCTCCACGCTTGGACGTGCCATGCGACGGAGGATGAGGTTCGATTGCGCGCTGCACAATGGGACCAAGAACCGTCGGACTATGTGGCATTGGCCGAGCGCTATTTAGGGTTTCAACAGCCTGGTTCGATCTATGGCTTTGCCGATGCTGGAAATGGGTACAAGAGGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACAACTACAGCAGAAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAACTCAATCAGTTGAGAGGCTGAAGGCAGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAAGTGGAGTTTGAAACTGCAATATATGCAAAGGTACGGGAAATTTCATATACTTTTCTGAATGTCTTGAATGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCGAAACAAACCACTACCGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGATCTTTTGACGATGAAAGCGATGCAGAAAAGAACTGACAGAGTCGTATGA

Protein sequence

MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKVREISYTFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTDLLTMKAMQKRTDRVV

Homology

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BLAST of IVF0026772 vs. ExPASy Swiss-Prot
Match: Q682V0 (DNA repair protein XRCC4 OS=Arabidopsis thaliana OX=3702 GN=XRCC4 PE=1 SV=2)

HSP 1 Score: 261.5 bits (667), Expect = 9.3e-69
Identity = 133/225 (59.11%), Postives = 171/225 (76.00%), Query Frame = 0


Query: 5   RHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRAAQWD 64
           +HTCL+LE+ + A P     IFVKGTW++ RFD+S+TDG  +W C+ATE+EV  RAAQWD
Sbjct: 24  KHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWD 83

Query: 65  QEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKT 124
           Q  S+Y+ LAE+YLGFQQP S+Y F+DA  G KRLSWTF+KEG KLEWRWKC+P+ D+K 
Sbjct: 84  QPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKK 143

Query: 125 TTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKVR 184
            T  IL+FLM+ANIRLSEEVV KT+S E++++E+E+CLAQ EK+CDEK EFE+A YAK  
Sbjct: 144 ITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAK-- 203

Query: 185 EISYTFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTD 230
                FL+VLNAKKAKLR  RD+         ++ +EE S+DK +
Sbjct: 204 -----FLSVLNAKKAKLRALRDK-----EDSVRVVEEEESTDKAE 230

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BLAST of IVF0026772 vs. ExPASy TrEMBL
Match: A0A5A7SK69 (DNA repair protein XRCC4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002240 PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 8.3e-121
Identity = 221/229 (96.51%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKVREISYTFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTD 230
           AK       FLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKT+
Sbjct: 181 AK-------FLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTE 222

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BLAST of IVF0026772 vs. ExPASy TrEMBL
Match: A0A1S3BZW1 (DNA repair protein XRCC4 OS=Cucumis melo OX=3656 GN=LOC103495407 PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 8.3e-121
Identity = 221/229 (96.51%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKVREISYTFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTD 230
           AK       FLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKT+
Sbjct: 181 AK-------FLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTE 222

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BLAST of IVF0026772 vs. ExPASy TrEMBL
Match: A0A0A0K2L2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064000 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 3.0e-115
Identity = 213/229 (93.01%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQP+ERSSIFVKGTWNH RFDLSITDG HAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQPGSIY FADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTA ILNFLMDANIRLSEEVVRK QSVERLKAESEKCLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKVREISYTFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTD 230
           AK       FLNVLNAKKAKLREYRDQLS+QT TGSKLKQEEYSSDKT+
Sbjct: 181 AK-------FLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTE 222

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BLAST of IVF0026772 vs. ExPASy TrEMBL
Match: A0A6J1GJL0 (DNA repair protein XRCC4 OS=Cucurbita moschata OX=3662 GN=LOC111454947 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 1.0e-102
Identity = 191/229 (83.41%), Postives = 204/229 (89.08%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPD R SIFVKGTW  HRFDLSITDGL+AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
            QWDQEPSDYV+LAERYLGFQQP S+YGFAD GNG KRLSWTF+KEGMKLEWRWKC+ AS
Sbjct: 61  EQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 120

Query: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTA IL+FLMDANIRLSEEVVRKTQS E+LK ESEKCLAQSE+IC+EKVEFETA+Y
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 180

Query: 181 AKVREISYTFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTD 230
           AK       FLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKT+
Sbjct: 181 AK-------FLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTE 222

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BLAST of IVF0026772 vs. ExPASy TrEMBL
Match: A0A6J1I7A5 (DNA repair protein XRCC4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470647 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 8.6e-102
Identity = 190/229 (82.97%), Postives = 202/229 (88.21%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPD R SIFVKGTW  HRFDLSITDGL+AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
            QWDQEPSDYV LAERYLGFQQP S+Y FAD GNG KRLSWTF+KEGMKLEWRWKC+ AS
Sbjct: 61  EQWDQEPSDYVGLAERYLGFQQPDSVYDFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 120

Query: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTA IL+FLMDANIRLSEEVVRKTQS E+LK ESEKCLAQSE+IC+EKVEFETA+Y
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 180

Query: 181 AKVREISYTFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTD 230
           AK       FLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKT+
Sbjct: 181 AK-------FLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTE 222

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BLAST of IVF0026772 vs. NCBI nr
Match: XP_008455175.1 (PREDICTED: DNA repair protein XRCC4 [Cucumis melo] >KAA0031462.1 DNA repair protein XRCC4 [Cucumis melo var. makuwa] >TYK06916.1 DNA repair protein XRCC4 [Cucumis melo var. makuwa])

HSP 1 Score: 441 bits (1134), Expect = 1.74e-155
Identity = 221/229 (96.51%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKVREISYTFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTD 229
           AK       FLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKT+
Sbjct: 181 AK-------FLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTE 222

[Close]

BLAST of IVF0026772 vs. NCBI nr
Match: XP_004136882.1 (DNA repair protein XRCC4 [Cucumis sativus] >KGN43738.1 hypothetical protein Csa_017256 [Cucumis sativus])

HSP 1 Score: 422 bits (1086), Expect = 3.61e-148
Identity = 213/229 (93.01%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQP+ERSSIFVKGTWNH RFDLSITDG HAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQPGSIY FADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTA ILNFLMDANIRLSEEVVRK QSVERLKAESEKCLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKVREISYTFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTD 229
           AK       FLNVLNAKKAKLREYRDQLS+QT TGSKLKQEEYSSDKT+
Sbjct: 181 AK-------FLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTE 222

[Close]

BLAST of IVF0026772 vs. NCBI nr
Match: XP_038888651.1 (DNA repair protein XRCC4 [Benincasa hispida])

HSP 1 Score: 407 bits (1047), Expect = 3.17e-142
Identity = 203/229 (88.65%), Postives = 214/229 (93.45%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDA RHTCLKLEVPTNAQP++RSSIFVKGTWNHH FDLSITDGL+AW+CHATEDEV LRA
Sbjct: 1   MDATRHTCLKLEVPTNAQPNDRSSIFVKGTWNHHHFDLSITDGLNAWSCHATEDEVLLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQPGS+YGF DAGNG +RLSWTFDKEGMKLEWRWKC+PAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSVYGFTDAGNGDRRLSWTFDKEGMKLEWRWKCKPAS 120

Query: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTA IL+FLMDANIRLSEEVVRKTQ  ERLK+ESE+CLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQLFERLKSESERCLAQSEKICDEKVEFETAIY 180

Query: 181 AKVREISYTFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTD 229
           AK       FLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKT+
Sbjct: 181 AK-------FLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTE 222

[Close]

BLAST of IVF0026772 vs. NCBI nr
Match: XP_022952201.1 (DNA repair protein XRCC4 [Cucurbita moschata])

HSP 1 Score: 381 bits (978), Expect = 1.03e-131
Identity = 191/229 (83.41%), Postives = 204/229 (89.08%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPD R SIFVKGTW  HRFDLSITDGL+AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
            QWDQEPSDYV+LAERYLGFQQP S+YGFAD GNG KRLSWTF+KEGMKLEWRWKC+ AS
Sbjct: 61  EQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 120

Query: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTA IL+FLMDANIRLSEEVVRKTQS E+LK ESEKCLAQSE+IC+EKVEFETA+Y
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 180

Query: 181 AKVREISYTFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTD 229
           AK       FLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKT+
Sbjct: 181 AK-------FLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTE 222

[Close]

BLAST of IVF0026772 vs. NCBI nr
Match: XP_022971995.1 (DNA repair protein XRCC4 isoform X1 [Cucurbita maxima])

HSP 1 Score: 378 bits (970), Expect = 1.70e-130
Identity = 190/229 (82.97%), Postives = 202/229 (88.21%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPD R SIFVKGTW  HRFDLSITDGL+AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
            QWDQEPSDYV LAERYLGFQQP S+Y FAD GNG KRLSWTF+KEGMKLEWRWKC+ AS
Sbjct: 61  EQWDQEPSDYVGLAERYLGFQQPDSVYDFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 120

Query: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTA IL+FLMDANIRLSEEVVRKTQS E+LK ESEKCLAQSE+IC+EKVEFETA+Y
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 180

Query: 181 AKVREISYTFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTD 229
           AK       FLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKT+
Sbjct: 181 AK-------FLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTE 222

[Close]

BLAST of IVF0026772 vs. TAIR 10
Match: AT3G23100.1 (homolog of human DNA ligase iv-binding protein XRCC4 )

HSP 1 Score: 261.5 bits (667), Expect = 6.6e-70
Identity = 133/225 (59.11%), Postives = 171/225 (76.00%), Query Frame = 0


Query: 5   RHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRAAQWD 64
           +HTCL+LE+ + A P     IFVKGTW++ RFD+S+TDG  +W C+ATE+EV  RAAQWD
Sbjct: 24  KHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWD 83

Query: 65  QEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKT 124
           Q  S+Y+ LAE+YLGFQQP S+Y F+DA  G KRLSWTF+KEG KLEWRWKC+P+ D+K 
Sbjct: 84  QPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKK 143

Query: 125 TTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKVR 184
            T  IL+FLM+ANIRLSEEVV KT+S E++++E+E+CLAQ EK+CDEK EFE+A YAK  
Sbjct: 144 ITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAK-- 203

Query: 185 EISYTFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTD 230
                FL+VLNAKKAKLR  RD+         ++ +EE S+DK +
Sbjct: 204 -----FLSVLNAKKAKLRALRDK-----EDSVRVVEEEESTDKAE 230

[Close]

BLAST of IVF0026772 vs. TAIR 10
Match: AT3G23100.2 (homolog of human DNA ligase iv-binding protein XRCC4 )

HSP 1 Score: 261.5 bits (667), Expect = 6.6e-70
Identity = 133/225 (59.11%), Postives = 171/225 (76.00%), Query Frame = 0


Query: 5   RHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRAAQWD 64
           +HTCL+LE+ + A P     IFVKGTW++ RFD+S+TDG  +W C+ATE+EV  RAAQWD
Sbjct: 24  KHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWD 83

Query: 65  QEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKT 124
           Q  S+Y+ LAE+YLGFQQP S+Y F+DA  G KRLSWTF+KEG KLEWRWKC+P+ D+K 
Sbjct: 84  QPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKK 143

Query: 125 TTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKVR 184
            T  IL+FLM+ANIRLSEEVV KT+S E++++E+E+CLAQ EK+CDEK EFE+A YAK  
Sbjct: 144 ITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAK-- 203

Query: 185 EISYTFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTD 230
                FL+VLNAKKAKLR  RD+         ++ +EE S+DK +
Sbjct: 204 -----FLSVLNAKKAKLRALRDK-----EDSVRVVEEEESTDKAE 230

[Close]

BLAST of IVF0026772 vs. TAIR 10
Match: AT1G61410.1 (DNA double-strand break repair and VJ recombination XRCC4 )

HSP 1 Score: 88.6 bits (218), Expect = 7.6e-18
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 134 MDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKVREISYTFLNV 193
           M+ANIRLSEEVV KT+S E++K+E+E+CLAQ EK+CDEK EFE A YAK       FL+V
Sbjct: 1   MEANIRLSEEVVNKTRSFEKMKSEAERCLAQGEKLCDEKTEFENATYAK-------FLSV 60

Query: 194 LNAKKAKLREYRDQ---LSKQTTTGSKLKQEEYSSDKTD 230
           LNAKKAKLR  RD+   +       S  K E + S ++D
Sbjct: 61  LNAKKAKLRAVRDKEDSVRAVEEEESTYKAESFESGRSD 92

The following BLAST results are available for this feature:

BLAST of IVF0026772 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q682V0	9.3e-69	59.11	DNA repair protein XRCC4 OS=Arabidopsis thaliana OX=3702 GN=XRCC4 PE=1 SV=2	[more]

BLAST of IVF0026772 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SK69	8.3e-121	96.51	DNA repair protein XRCC4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BZW1	8.3e-121	96.51	DNA repair protein XRCC4 OS=Cucumis melo OX=3656 GN=LOC103495407 PE=4 SV=1	[more]
A0A0A0K2L2	3.0e-115	93.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064000 PE=4 SV=1	[more]
A0A6J1GJL0	1.0e-102	83.41	DNA repair protein XRCC4 OS=Cucurbita moschata OX=3662 GN=LOC111454947 PE=4 SV=1	[more]
A0A6J1I7A5	8.6e-102	82.97	DNA repair protein XRCC4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470647 ...	[more]

BLAST of IVF0026772 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455175.1	1.74e-155	96.51	PREDICTED: DNA repair protein XRCC4 [Cucumis melo] >KAA0031462.1 DNA repair prot...	[more]
XP_004136882.1	3.61e-148	93.01	DNA repair protein XRCC4 [Cucumis sativus] >KGN43738.1 hypothetical protein Csa_...	[more]
XP_038888651.1	3.17e-142	88.65	DNA repair protein XRCC4 [Benincasa hispida]	[more]
XP_022952201.1	1.03e-131	83.41	DNA repair protein XRCC4 [Cucurbita moschata]	[more]
XP_022971995.1	1.70e-130	82.97	DNA repair protein XRCC4 isoform X1 [Cucurbita maxima]	[more]

BLAST of IVF0026772 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23100.1	6.6e-70	59.11	homolog of human DNA ligase iv-binding protein XRCC4	[more]
AT3G23100.2	6.6e-70	59.11	homolog of human DNA ligase iv-binding protein XRCC4	[more]
AT1G61410.1	7.6e-18	54.55	DNA double-strand break repair and VJ recombination XRCC4	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 137..157
None	No IPR available	COILS	Coil	Coil	coord: 191..214
None	No IPR available	SUPERFAMILY	58022	XRCC4, C-terminal oligomerization domain	coord: 122..214
IPR014751	DNA repair protein XRCC4-like, C-terminal	GENE3D	1.20.5.370		coord: 125..223 e-value: 7.0E-11 score: 44.0
IPR010585	DNA repair protein XRCC4	PFAM	PF06632	XRCC4	coord: 35..232 e-value: 3.7E-11 score: 42.5
IPR010585	DNA repair protein XRCC4	PANTHER	PTHR28559	DNA REPAIR PROTEIN XRCC4	coord: 2..234
IPR038051	XRCC4-like, N-terminal domain superfamily	GENE3D	2.170.210.10		coord: 13..124 e-value: 7.6E-6 score: 27.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026772.1	IVF0026772.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051103	DNA ligation involved in DNA repair
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0051351	positive regulation of ligase activity
biological_process	GO:0010165	response to X-ray
biological_process	GO:0006302	double-strand break repair
cellular_component	GO:0005958	DNA-dependent protein kinase-DNA ligase 4 complex
cellular_component	GO:0032807	DNA ligase IV complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016874	ligase activity