IVF0026625 (gene) Melon (IVF77) v1

Overview
NameIVF0026625
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr04: 13257712 .. 13257960 (+)
RNA-Seq ExpressionIVF0026625
SyntenyIVF0026625
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCTGCGAAGTCAAAAGCAACTACACGACTTGGAACTGAAATGTGATAACTCAAATGCTCACAACCAGGGTCAGATGGACCAGCCCAAGGCTAAAATGAATGGGCTCAAAACGCATAACCAAGAGCTCAAAACGAAACTTCAAGAAATCAGGAAACAAAATGAAATGCCGATGGGTTTGGTTGAGCAAAATGAAATACTCATTGAGATATCACTTAGTGATGTACAACATCATCTTTGTACCTGA

mRNA sequence

ATGCATCTGCGAAGTCAAAAGCAACTACACGACTTGGAACTGAAATGTGATAACTCAAATGCTCACAACCAGGGTCAGATGGACCAGCCCAAGGCTAAAATGAATGGGCTCAAAACGCATAACCAAGAGCTCAAAACGAAACTTCAAGAAATCAGGAAACAAAATGAAATGCCGATGGGTTTGGTTGAGCAAAATGAAATACTCATTGAGATATCACTTAGTGATGTACAACATCATCTTTGTACCTGA

Coding sequence (CDS)

ATGCATCTGCGAAGTCAAAAGCAACTACACGACTTGGAACTGAAATGTGATAACTCAAATGCTCACAACCAGGGTCAGATGGACCAGCCCAAGGCTAAAATGAATGGGCTCAAAACGCATAACCAAGAGCTCAAAACGAAACTTCAAGAAATCAGGAAACAAAATGAAATGCCGATGGGTTTGGTTGAGCAAAATGAAATACTCATTGAGATATCACTTAGTGATGTACAACATCATCTTTGTACCTGA

Protein sequence

MHLRSQKQLHDLELKCDNSNAHNQGQMDQPKAKMNGLKTHNQELKTKLQEIRKQNEMPMGLVEQNEILIEISLSDVQHHLCT
Homology
BLAST of IVF0026625 vs. ExPASy TrEMBL
Match: A0A5A7T3H5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001500 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.3e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1   MHLRSQKQLHDLELKCDNSNAHNQGQMDQPKAKMNGLKTHNQELKTKLQEIRKQNEMPMG 60
           MHLRSQKQLHDLELKCDNSNAHNQGQMDQPKAKMNGLKTHNQELKTKLQEIRKQNEMPMG
Sbjct: 34  MHLRSQKQLHDLELKCDNSNAHNQGQMDQPKAKMNGLKTHNQELKTKLQEIRKQNEMPMG 93

Query: 61  LVEQNEILIEISLSDVQHHLCT 83
           LVEQNEILIEISLSDVQHHLCT
Sbjct: 94  LVEQNEILIEISLSDVQHHLCT 115

BLAST of IVF0026625 vs. ExPASy TrEMBL
Match: A0A0A0M313 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G637940 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.2e-08
Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 1  MHLRSQKQLHDLELKCDNSNAHNQGQMDQPKAKMNGLKTHNQELKTKLQEIRKQNEMPMG 60
          MHL+SQKQL DLELK DN++ H+Q Q +  KA+M  L+ HNQELK+K  +++ QN++ M 
Sbjct: 1  MHLQSQKQLQDLELKVDNASTHHQAQSEVLKAEMQELRLHNQELKSKNLKLKAQNKVIMR 60

Query: 61 LVEQ 65
          ++EQ
Sbjct: 61 MIEQ 64

BLAST of IVF0026625 vs. NCBI nr
Match: KAA0038042.1 (hypothetical protein E6C27_scaffold36G002430 [Cucumis melo var. makuwa] >TYK20561.1 hypothetical protein E5676_scaffold237G001500 [Cucumis melo var. makuwa])

HSP 1 Score: 161 bits (408), Expect = 1.96e-49
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1   MHLRSQKQLHDLELKCDNSNAHNQGQMDQPKAKMNGLKTHNQELKTKLQEIRKQNEMPMG 60
           MHLRSQKQLHDLELKCDNSNAHNQGQMDQPKAKMNGLKTHNQELKTKLQEIRKQNEMPMG
Sbjct: 34  MHLRSQKQLHDLELKCDNSNAHNQGQMDQPKAKMNGLKTHNQELKTKLQEIRKQNEMPMG 93

Query: 61  LVEQNEILIEISLSDVQHHLCT 82
           LVEQNEILIEISLSDVQHHLCT
Sbjct: 94  LVEQNEILIEISLSDVQHHLCT 115

BLAST of IVF0026625 vs. NCBI nr
Match: KGN66596.1 (hypothetical protein Csa_007620 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 2.48e-11
Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 1  MHLRSQKQLHDLELKCDNSNAHNQGQMDQPKAKMNGLKTHNQELKTKLQEIRKQNEMPMG 60
          MHL+SQKQL DLELK DN++ H+Q Q +  KA+M  L+ HNQELK+K  +++ QN++ M 
Sbjct: 1  MHLQSQKQLQDLELKVDNASTHHQAQSEVLKAEMQELRLHNQELKSKNLKLKAQNKVIMR 60

Query: 61 LVEQ 64
          ++EQ
Sbjct: 61 MIEQ 64

BLAST of IVF0026625 vs. NCBI nr
Match: KAA0063408.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK11667.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 48.1 bits (113), Expect = 5.22e-04
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 1   MHLRSQKQLHDLELKCDNSNAHNQGQMDQPKAKMNGLKTHNQELKTKL 48
           MHL  QKQ HDLELK DN+NA+N  Q++  +A+MN LKT N EL  +L
Sbjct: 289 MHLWIQKQFHDLELKFDNTNAYNLVQIEAFEAEMNELKTQNGELNLQL 336

BLAST of IVF0026625 vs. NCBI nr
Match: KGN49653.1 (hypothetical protein Csa_018510 [Cucumis sativus])

HSP 1 Score: 47.0 bits (110), Expect = 6.83e-04
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 0

Query: 1   MHLRSQKQLHDLELKCDNSNAHNQGQMDQPKAKMNGLKTHNQELKTKLQEIRKQNEMPMG 60
           MH +SQKQL D +LK DN N H+Q Q++  KAKM       QEL  + QE++ QN++ M 
Sbjct: 78  MHFQSQKQLEDFKLKLDNKNHHHQVQIEGLKAKM-------QELILQEQELKVQNQVIME 137

Query: 61  LVEQ----NEILIEISLSDVQHHLCT 82
           +V+Q    N++    +L  +   +C+
Sbjct: 138 MVKQTTRWNDVQFTSALRYLYSSMCS 156

BLAST of IVF0026625 vs. NCBI nr
Match: KAA0041296.1 (hypothetical protein E6C27_scaffold128G002890 [Cucumis melo var. makuwa] >TYK02756.1 hypothetical protein E5676_scaffold145G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 45.4 bits (106), Expect = 7.42e-04
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 0

Query: 34 MNGLKTHNQELKTKLQEIRKQNEMPMGLVEQNEILIEISLSDVQHHL 80
          MN LKT  QELKT+LQEIR+ NE+ MGL EQN +  ++       +L
Sbjct: 1  MNELKTQTQELKTQLQEIREPNEILMGLTEQNAVWNDVQFRSALRYL 47

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T3H54.3e-37100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0M3139.2e-0853.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G637940 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0038042.11.96e-49100.00hypothetical protein E6C27_scaffold36G002430 [Cucumis melo var. makuwa] >TYK2056... [more]
KGN66596.12.48e-1153.13hypothetical protein Csa_007620 [Cucumis sativus][more]
KAA0063408.15.22e-0458.33ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK11667.1 ty3-gyp... [more]
KGN49653.16.83e-0438.37hypothetical protein Csa_018510 [Cucumis sativus][more]
KAA0041296.17.42e-0451.06hypothetical protein E6C27_scaffold128G002890 [Cucumis melo var. makuwa] >TYK027... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 34..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..35

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0026625.1IVF0026625.1mRNA