IVF0026622 (gene) Melon (IVF77) v1

Overview
NameIVF0026622
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr01: 19435316 .. 19435468 (+)
RNA-Seq ExpressionIVF0026622
SyntenyIVF0026622
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGACGACGTTGACAACGTGGACGAGGGGGACTCCACGTACGTGACGACCACTGCTTCAAAAGACATTCACTACTTTGAGACGACAAACGAGTGGTCTCAGTGGTGCGACGAACTAGTCGAATCGATGTTCACTTATTGGTAG

mRNA sequence

ATGACATATTGCGACGACGTTGACAACGTGGACGAGGGGGACTCCACGTACGTGACGACCACTGCTTCAAAAGACATTCACTACTTTGAGACGACAAACGAGTGGTCTCAGTGGTGCGACGAACTAGTCGAATCGATGTTCACTTATTGGTAG

Coding sequence (CDS)

ATGACATATTGCGACGACGTTGACAACGTGGACGAGGGGGACTCCACGTACGTGACGACCACTGCTTCAAAAGACATTCACTACTTTGAGACGACAAACGAGTGGTCTCAGTGGTGCGACGAACTAGTCGAATCGATGTTCACTTATTGGTAG

Protein sequence

MTYCDDVDNVDEGDSTYVTTTASKDIHYFETTNEWSQWCDELVESMFTYW
Homology
BLAST of IVF0026622 vs. ExPASy TrEMBL
Match: A0A5A7TCF8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00160 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 1  MTYCDDVDNVDEGDSTYVTTTASKDIHYFETTNEWSQWCDELVESMFTY 50
          MTYCDDVDNVDEGDSTYVTTTASKDIHYFETTNEWSQWCDELVESMFTY
Sbjct: 1  MTYCDDVDNVDEGDSTYVTTTASKDIHYFETTNEWSQWCDELVESMFTY 49

BLAST of IVF0026622 vs. ExPASy TrEMBL
Match: A0A5A7VK86 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001570 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1   MTYCDDVDNVDEGDSTYVTTTASKDIHYFETTNEWSQWCDELVESMFTYW 51
           MTYC+DVD+VDEGDSTY TTTAS+DIHY ETTNEWSQW DELVESMFT W
Sbjct: 246 MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDW 295

BLAST of IVF0026622 vs. ExPASy TrEMBL
Match: A0A5D3C7D1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00990 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.3e-16
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1   MTYCDDVDNVDEGDSTYVTTTASKDIHYFETTNEWSQWCDELVESMFTYW 51
           MTYCD+VD++DEGDSTY TTTAS+DIHY ETTNEWSQW DELVESMFT W
Sbjct: 162 MTYCDNVDDMDEGDSTYTTTTASEDIHYIETTNEWSQWRDELVESMFTDW 211

BLAST of IVF0026622 vs. ExPASy TrEMBL
Match: A0A5A7URP2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G001330 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.3e-16
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1   MTYCDDVDNVDEGDSTYVTTTASKDIHYFETTNEWSQWCDELVESMFTYW 51
           MTYCD+VD++DEGDSTY TTTAS+DIHY ETTNEWSQW DELVESMFT W
Sbjct: 209 MTYCDNVDDMDEGDSTYTTTTASEDIHYIETTNEWSQWRDELVESMFTDW 258

BLAST of IVF0026622 vs. ExPASy TrEMBL
Match: A0A5D3DG14 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00260 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.6e-16
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 0

Query: 1   MTYCDDVDNVDEGDSTYVTTTASKDIHYFETTNEWSQWCDELVESMFTYW 51
           MTYCDDVDNVDEGDSTY TT A++DIHY +TTNEWSQW DEL+ESMFT W
Sbjct: 101 MTYCDDVDNVDEGDSTYATTIATEDIHYIKTTNEWSQWHDELIESMFTDW 150

BLAST of IVF0026622 vs. NCBI nr
Match: KAA0040793.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK17774.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (267), Expect = 9.21e-29
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 1  MTYCDDVDNVDEGDSTYVTTTASKDIHYFETTNEWSQWCDELVESMFTY 49
          MTYCDDVDNVDEGDSTYVTTTASKDIHYFETTNEWSQWCDELVESMFTY
Sbjct: 1  MTYCDDVDNVDEGDSTYVTTTASKDIHYFETTNEWSQWCDELVESMFTY 49

BLAST of IVF0026622 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 5.30e-23
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0

Query: 1  MTYCDDVDNVDEGDSTYVTTTASKDIHYFETTNEWSQWCDELVESMFTYW 50
          MTYCDD+D+VDEGDS Y TTTAS+DIHY ETTNEWSQW DEL ESMFT W
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDW 50

BLAST of IVF0026622 vs. NCBI nr
Match: KAA0062745.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22544.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 5.47e-22
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 0

Query: 1   MTYCDDVDNVDEGDSTYVTTTASKDIHYFETTNEWSQWCDELVESMFTYW 50
           MTYCDDVDNVDEGDSTY TT A++DIHY +TTNEWSQW DEL+ESMFT W
Sbjct: 101 MTYCDDVDNVDEGDSTYATTIATEDIHYIKTTNEWSQWHDELIESMFTDW 150

BLAST of IVF0026622 vs. NCBI nr
Match: TYK07212.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.62e-21
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1   MTYCDDVDNVDEGDSTYVTTTASKDIHYFETTNEWSQWCDELVESMFTYW 50
           MTYCD+VD++DEGDSTY TTTAS+DIHY ETTNEWSQW DELVESMFT W
Sbjct: 162 MTYCDNVDDMDEGDSTYTTTTASEDIHYIETTNEWSQWRDELVESMFTDW 211

BLAST of IVF0026622 vs. NCBI nr
Match: KAA0066806.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK27953.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.88e-21
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1   MTYCDDVDNVDEGDSTYVTTTASKDIHYFETTNEWSQWCDELVESMFTYW 50
           MTYC+DVD+VDEGDSTY TTTAS+DIHY ETTNEWSQW DELVESMFT W
Sbjct: 246 MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDW 295

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TCF81.3e-20100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VK861.5e-1686.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C7D14.3e-1684.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7URP24.3e-1684.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DG145.6e-1682.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0040793.19.21e-29100.00retrotransposon protein [Cucumis melo var. makuwa] >TYK17774.1 retrotransposon p... [more]
KAA0054051.15.30e-2382.00retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p... [more]
KAA0062745.15.47e-2282.00retrotransposon protein [Cucumis melo var. makuwa] >TYK22544.1 retrotransposon p... [more]
TYK07212.11.62e-2184.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0066806.11.88e-2186.00retrotransposon protein [Cucumis melo var. makuwa] >TYK27953.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0026622.1IVF0026622.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
molecular_function GO:0046872 metal ion binding