Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACCGAATGCACTGCATCCGAGAGAGCGAGCGCCGACGACGCGGCCCGCAATGACAACCGAAGATGTCAAGGCGGAACGCGATGCGGGCTATCGGGTTCGTTGTCCACCCAAAGATGGGTGTCAACAGAAAGGGGCCAACGGGACGCGTCGCTTCCATCGCGTGAGGTACCGATGCAAGAACCGATCGATTGTGACCGCTCGAACTCAAGCTTTGTTCGGGGCACGTCAATGA mRNA sequence
ATGCCACCGAATGCACTGCATCCGAGAGAGCGAGCGCCGACGACGCGGCCCGCAATGACAACCGAAGATGTCAAGGCGGAACGCGATGCGGGCTATCGGGTTCGTTGTCCACCCAAAGATGGGTGTCAACAGAAAGGGGCCAACGGGACGCGTCGCTTCCATCGCGTGAGGTACCGATGCAAGAACCGATCGATTGTGACCGCTCGAACTCAAGCTTTGTTCGGGGCACGTCAATGA Coding sequence (CDS)
ATGCCACCGAATGCACTGCATCCGAGAGAGCGAGCGCCGACGACGCGGCCCGCAATGACAACCGAAGATGTCAAGGCGGAACGCGATGCGGGCTATCGGGTTCGTTGTCCACCCAAAGATGGGTGTCAACAGAAAGGGGCCAACGGGACGCGTCGCTTCCATCGCGTGAGGTACCGATGCAAGAACCGATCGATTGTGACCGCTCGAACTCAAGCTTTGTTCGGGGCACGTCAATGA Protein sequence
MPPNALHPRERAPTTRPAMTTEDVKAERDAGYRVRCPPKDGCQQKGANGTRRFHRVRYRCKNRSIVTARTQALFGARQ
Homology
BLAST of IVF0026618 vs. ExPASy TrEMBL
Match:
A0A5D3BW21 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00500 PE=4 SV=1)
HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 37/74 (50.00%), Postives = 41/74 (55.41%), Query Frame = 0
Query: 1 MPPNALHPRERAPTTRPAMTTEDVKAERDAGYRVRCPPKDGCQQKGANGTRRFHRVRY-R 60 MPPNALHPRERA TTRP MTT+DVK E DAGYR GC+ R R RY Sbjct: 1 MPPNALHPRERAATTRPTMTTKDVKGELDAGYR-------GCRVAAQGRARNVVRARYEH 60 Query: 61 CKNRSIVTARTQAL 74 C + T +L Sbjct: 61 CVTHVKIATETPSL 67
BLAST of IVF0026618 vs. NCBI nr
Match:
TYK03168.1 (hypothetical protein E5676_scaffold11G00500 [Cucumis melo var. makuwa])
HSP 1 Score: 62.8 bits (151), Expect = 3.22e-09
Identity = 37/74 (50.00%), Postives = 41/74 (55.41%), Query Frame = 0
Query: 1 MPPNALHPRERAPTTRPAMTTEDVKAERDAGYRVRCPPKDGCQQKGANGTRRFHRVRYR- 60 MPPNALHPRERA TTRP MTT+DVK E DAGYR GC+ R R RY Sbjct: 1 MPPNALHPRERAATTRPTMTTKDVKGELDAGYR-------GCRVAAQGRARNVVRARYEH 60 Query: 61 CKNRSIVTARTQAL 73 C + T +L Sbjct: 61 CVTHVKIATETPSL 67
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A5D3BW21 1.3e-06 50.00 Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match Name E-value Identity Description
TYK03168.1 3.22e-09 50.00 hypothetical protein E5676_scaffold11G00500 [Cucumis melo var. makuwa] [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
A T G C C A C C G A A T G C A C T G C A T C C G A G A G A G C G A G C G C C G A C G A C G C G G C C C G C A A T G A C A A C C G A A G A T G T C A A G G C G G A A C G C G A T G C G G G C T A T C G G G T T C G T T G T C C A C C C A A A G A T G G G T G T C A A C A G A A A G G G G C C A A C G G G A C G C G T C G C T T C C A T C G C G T G A G G T A C C G A T G C A A G A A C C G A T C G A T T G T G A C C G C T C G A A C T C A A G C T T T G T T C G G G G C A C G T C A A T G A 20 40 60 80 100 120 140 160 180 200 220 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..30
Relationships
The following mRNA feature(s) are a part of this gene: