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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTAACTTTTTTTTTAAGATTGCCAGATCATGAAGATCGTGTTTGTGATAGTGGGAAAGTGGGAAGAATCGTGGGAAGAATCGTGGAGAGGGAGGATCGTGGAGAGGGAGGATCGTGGAGAGGAAGAATCGTGGAGAGGGAGAATCGTGGAGAGGGAGGGGAAAATCGTAGGACTGGAAGTGGTTGA mRNA sequence ATGGTAACTTTTTTTTTAAGATTGCCAGATCATGAAGATCGTGTTTGTGATAGTGGGAAAGTGGGAAGAATCGTGGGAAGAATCGTGGAGAGGGAGGATCGTGGAGAGGGAGGATCGTGGAGAGGAAGAATCGTGGAGAGGGAGAATCGTGGAGAGGGAGGGGAAAATCGTAGGACTGGAAGTGGTTGA Coding sequence (CDS) ATGGTAACTTTTTTTTTAAGATTGCCAGATCATGAAGATCGTGTTTGTGATAGTGGGAAAGTGGGAAGAATCGTGGGAAGAATCGTGGAGAGGGAGGATCGTGGAGAGGGAGGATCGTGGAGAGGAAGAATCGTGGAGAGGGAGAATCGTGGAGAGGGAGGGGAAAATCGTAGGACTGGAAGTGGTTGA Protein sequence MVTFFLRLPDHEDRVCDSGKVGRIVGRIVEREDRGEGGSWRGRIVERENRGEGGENRRTGSG
Homology
BLAST of IVF0026616 vs. ExPASy TrEMBL
Match: A0A5D3DTV3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold876G00170 PE=4 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 1.4e-16 Identity = 54/67 (80.60%), Postives = 56/67 (83.58%), Query Frame = 0
Query: 1 MVTFFLRLPDHEDRVCDSGKVGRIVGRIVEREDRGEGGSWRGRI-----VERENRGEGGE 60
M+TFFLRLPDHEDRVCDSGK VGRIVEREDRGEGGSWRGRI VER+NRGE GE
Sbjct: 126 MITFFLRLPDHEDRVCDSGK----VGRIVEREDRGEGGSWRGRIVERGNVERKNRGE-GE 185
Query: 61 NRRTGSG 63
NRRT SG
Sbjct: 186 NRRTRSG 187
BLAST of IVF0026616 vs. NCBI nr
Match: TYK26934.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 94.4 bits (233), Expect = 8.45e-21 Identity = 54/67 (80.60%), Postives = 56/67 (83.58%), Query Frame = 0
Query: 1 MVTFFLRLPDHEDRVCDSGKVGRIVGRIVEREDRGEGGSWRGRIVER-----ENRGEGGE 60
M+TFFLRLPDHEDRVCDSGKVGRI VEREDRGEGGSWRGRIVER +NRGEG E
Sbjct: 126 MITFFLRLPDHEDRVCDSGKVGRI----VEREDRGEGGSWRGRIVERGNVERKNRGEG-E 185
Query: 61 NRRTGSG 62
NRRT SG
Sbjct: 186 NRRTRSG 187
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DTV3 | 1.4e-16 | 80.60 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold876G0017... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK26934.1 | 8.45e-21 | 80.60 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 36..62 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 36..55 |
Relationships
The following mRNA feature(s) are a part of this gene:
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