IVF0026585 (gene) Melon (IVF77) v1

Overview


Name	IVF0026585
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	B3 domain-containing protein At2g31420-like
Location	chr09: 18656910 .. 18657110 (+)
RNA-Seq Expression	IVF0026585
Synteny	IVF0026585

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTTTCGTTGGTTTCTGAGATACCGACGGCTATGAGAGAGCGAATAGTGGAGATGGGCGGGTACGAAATTAATCTGGTGATTCAGAAACAGCTTCAAGATACTGATCTGAACAAGAATGAAGGGCGTTTGTCACTCCCAGCAAAGAAACTGTTGTACGATTTTACAACGGAGGAGGAAAGGAGGTTGCTTAGCTAA

mRNA sequence

ATGGATCTTTCGTTGGTTTCTGAGATACCGACGGCTATGAGAGAGCGAATAGTGGAGATGGGCGGGTACGAAATTAATCTGGTGATTCAGAAACAGCTTCAAGATACTGATCTGAACAAGAATGAAGGGCGTTTGTCACTCCCAGCAAAGAAACTGTTGTACGATTTTACAACGGAGGAGGAAAGGAGGTTGCTTAGCTAA

Coding sequence (CDS)

ATGGATCTTTCGTTGGTTTCTGAGATACCGACGGCTATGAGAGAGCGAATAGTGGAGATGGGCGGGTACGAAATTAATCTGGTGATTCAGAAACAGCTTCAAGATACTGATCTGAACAAGAATGAAGGGCGTTTGTCACTCCCAGCAAAGAAACTGTTGTACGATTTTACAACGGAGGAGGAAAGGAGGTTGCTTAGCTAA

Protein sequence

MDLSLVSEIPTAMRERIVEMGGYEINLVIQKQLQDTDLNKNEGRLSLPAKKLLYDFTTEEERRLLS

Homology

[Close]

BLAST of IVF0026585 vs. ExPASy TrEMBL
Match: A0A5D3E4N7 (Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00670 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.2e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MDLSLVSEIPTAMRERIVEMGGYEINLVIQKQLQDTDLNKNEGRLSLPAKKLLYDFTTEE 60
          MDLSLVSEIPTAMRERIVEMGGYEINLVIQKQLQDTDLNKNEGRLSLPAKKLLYDFTTEE
Sbjct: 1  MDLSLVSEIPTAMRERIVEMGGYEINLVIQKQLQDTDLNKNEGRLSLPAKKLLYDFTTEE 60

Query: 61 ERRLLS 67
          ERRLLS
Sbjct: 61 ERRLLS 66

[Close]

BLAST of IVF0026585 vs. ExPASy TrEMBL
Match: A0A5D3CT22 (Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold663G00310 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.7e-18
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 6   VSEIPTAMRERIVEMGGYEINLVIQKQLQDTDLNKNEGRLSLPAKKLLYDFTTEEERRLL 65
           + E+PT MR+RI EMGGYEINLVIQKQL DTDLNKNEGRLS+P KKL +DFTTEEER LL
Sbjct: 56  IPEMPTTMRDRIEEMGGYEINLVIQKQLTDTDLNKNEGRLSMPKKKLAFDFTTEEERNLL 115

Query: 66  S 67
           S
Sbjct: 116 S 116

[Close]

BLAST of IVF0026585 vs. ExPASy TrEMBL
Match: A0A1S3CSS4 (putative B3 domain-containing protein At3g24850 OS=Cucumis melo OX=3656 GN=LOC103504467 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.7e-18
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 6   VSEIPTAMRERIVEMGGYEINLVIQKQLQDTDLNKNEGRLSLPAKKLLYDFTTEEERRLL 65
           + E+PT MR+RI EMGGYEINLVIQKQL DTDLNKNEGRLS+P KKL +DFTTEEER LL
Sbjct: 102 IPEMPTTMRDRIEEMGGYEINLVIQKQLTDTDLNKNEGRLSMPKKKLAFDFTTEEERNLL 161

Query: 66  S 67
           S
Sbjct: 162 S 162

[Close]

BLAST of IVF0026585 vs. ExPASy TrEMBL
Match: A0A6J1CX35 (putative B3 domain-containing protein At2g27410 OS=Momordica charantia OX=3673 GN=LOC111015593 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.4e-16
Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1   MDLSLVSEIPTAMRERIVEMGGYEINLVIQKQLQDTDLNKNEGRLSLPAKKL-LYDFTTE 60
           M+L +  E+P AMR+RIVE+GGY I LVIQKQLQ+TD+NKN GRLSLPAKKL ++DF TE
Sbjct: 114 MELPVTPEMPAAMRDRIVEIGGYGIQLVIQKQLQNTDMNKNHGRLSLPAKKLRIHDFVTE 173

Query: 61  EERRLLS 67
           EER+LL+
Sbjct: 174 EERKLLN 180

[Close]

BLAST of IVF0026585 vs. ExPASy TrEMBL
Match: A0A0A0KUX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570410 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.2e-15
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MDLSLVSEIPTAMRERIVEMGGYEINLVIQKQLQDTDLNKNEGRLSLPAKKLLYDFTTEE 60
           +D S    +P AMR+RI+EMGGYEINLVIQKQL DTDLNKN GRLS+  K+L +DF TEE
Sbjct: 100 VDQSERPSMPVAMRDRILEMGGYEINLVIQKQLTDTDLNKNHGRLSMNTKQLSFDFATEE 159

Query: 61  ERRLLS 67
           E +LLS
Sbjct: 160 ESKLLS 165

[Close]

BLAST of IVF0026585 vs. NCBI nr
Match: KAA0046357.1 (putative B3 domain-containing protein [Cucumis melo var. makuwa] >TYK30521.1 putative B3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (324), Expect = 1.52e-37
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MDLSLVSEIPTAMRERIVEMGGYEINLVIQKQLQDTDLNKNEGRLSLPAKKLLYDFTTEE 60
          MDLSLVSEIPTAMRERIVEMGGYEINLVIQKQLQDTDLNKNEGRLSLPAKKLLYDFTTEE
Sbjct: 1  MDLSLVSEIPTAMRERIVEMGGYEINLVIQKQLQDTDLNKNEGRLSLPAKKLLYDFTTEE 60

Query: 61 ERRLLS 66
          ERRLLS
Sbjct: 61 ERRLLS 66

[Close]

BLAST of IVF0026585 vs. NCBI nr
Match: XP_038875653.1 (B3 domain-containing protein At1g05920-like [Benincasa hispida])

HSP 1 Score: 105 bits (263), Expect = 3.74e-26
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 6   VSEIPTAMRERIVEMGGYEINLVIQKQLQDTDLNKNEGRLSLPAKKLLYDFTTEEERRLL 65
           + E+P AMR+RIVEMGGYEINLVIQKQLQDTDLNKN GRLSLP KKLL+DF TEEERRLL
Sbjct: 101 IPEMPAAMRDRIVEMGGYEINLVIQKQLQDTDLNKNLGRLSLPQKKLLFDFATEEERRLL 160

[Close]

BLAST of IVF0026585 vs. NCBI nr
Match: XP_038905532.1 (putative B3 domain-containing protein At3g24850 [Benincasa hispida])

HSP 1 Score: 102 bits (254), Expect = 3.00e-25
Identity = 48/61 (78.69%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 6   VSEIPTAMRERIVEMGGYEINLVIQKQLQDTDLNKNEGRLSLPAKKLLYDFTTEEERRLL 65
           + E+P A+R+RIVEMGGYEI LVIQKQL+DTDLNKN GRLS+P KKLL+DFTTEEER+LL
Sbjct: 60  IPEMPAALRDRIVEMGGYEIRLVIQKQLEDTDLNKNHGRLSMPIKKLLFDFTTEEERKLL 119

[Close]

BLAST of IVF0026585 vs. NCBI nr
Match: KAA0046406.1 (putative B3 domain-containing protein [Cucumis melo var. makuwa] >TYK14655.1 putative B3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 4.04e-25
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 6   VSEIPTAMRERIVEMGGYEINLVIQKQLQDTDLNKNEGRLSLPAKKLLYDFTTEEERRLL 65
           + E+PT MR+RI EMGGYEINLVIQKQL DTDLNKNEGRLS+P KKL +DFTTEEER LL
Sbjct: 56  IPEMPTTMRDRIEEMGGYEINLVIQKQLTDTDLNKNEGRLSMPKKKLAFDFTTEEERNLL 115

[Close]

BLAST of IVF0026585 vs. NCBI nr
Match: XP_038874960.1 (B3 domain-containing protein At2g31420-like [Benincasa hispida])

HSP 1 Score: 102 bits (255), Expect = 4.72e-25
Identity = 49/61 (80.33%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 6   VSEIPTAMRERIVEMGGYEINLVIQKQLQDTDLNKNEGRLSLPAKKLLYDFTTEEERRLL 65
           + EIP AMR+RIV+MGGY INLVIQKQLQDTDLNKN+GRLSLPA+KLL+DF TEEE++LL
Sbjct: 96  IPEIPAAMRDRIVKMGGYGINLVIQKQLQDTDLNKNQGRLSLPAEKLLFDFATEEEKKLL 155

[Close]

BLAST of IVF0026585 vs. TAIR 10
Match: AT2G27410.1 (Domain of unknown function (DUF313) )

HSP 1 Score: 40.8 bits (94), Expect = 4.9e-04
Identity = 22/48 (45.83%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 19  EMGGYEINLVIQKQLQDTDLNKNEGRLSLPAKKL-LYDFTTEEERRLL 66
           E  GY   L+  +QL  TDL K E RLS+P K++   DF TE+E R++
Sbjct: 80  EENGYNPKLISTRQLYKTDLKKTEARLSVPFKQVKTPDFLTEDETRII 127

The following BLAST results are available for this feature:

BLAST of IVF0026585 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026585 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E4N7	1.2e-26	100.00	Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3CT22	2.7e-18	80.33	Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3CSS4	2.7e-18	80.33	putative B3 domain-containing protein At3g24850 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1CX35	4.4e-16	70.15	putative B3 domain-containing protein At2g27410 OS=Momordica charantia OX=3673 G...	[more]
A0A0A0KUX9	8.2e-15	68.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570410 PE=4 SV=1	[more]

BLAST of IVF0026585 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046357.1	1.52e-37	100.00	putative B3 domain-containing protein [Cucumis melo var. makuwa] >TYK30521.1 put...	[more]
XP_038875653.1	3.74e-26	85.25	B3 domain-containing protein At1g05920-like [Benincasa hispida]	[more]
XP_038905532.1	3.00e-25	78.69	putative B3 domain-containing protein At3g24850 [Benincasa hispida]	[more]
KAA0046406.1	4.04e-25	80.33	putative B3 domain-containing protein [Cucumis melo var. makuwa] >TYK14655.1 put...	[more]
XP_038874960.1	4.72e-25	80.33	B3 domain-containing protein At2g31420-like [Benincasa hispida]	[more]

BLAST of IVF0026585 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27410.1	4.9e-04	45.83	Domain of unknown function (DUF313)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005508	B3 domain-containing protein At2g31720-like	PFAM	PF03754	DUF313	coord: 10..65 e-value: 1.9E-8 score: 34.5
IPR005508	B3 domain-containing protein At2g31720-like	PANTHER	PTHR31541	B3 DOMAIN PLANT PROTEIN-RELATED	coord: 7..65
None	No IPR available	PANTHER	PTHR31541:SF25	DOMAIN PROTEIN, PUTATIVE (DUF313)-RELATED	coord: 7..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026585.1	IVF0026585.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding