IVF0026580 (gene) Melon (IVF77) v1

Overview


Name	IVF0026580
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr08: 23384721 .. 23384906 (+)
RNA-Seq Expression	IVF0026580
Synteny	IVF0026580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAAAAACGGAAGAGAAAGCGACGGTGGAAAAACGGAAGAGAAAGCTACGGTGGAAAAGCTACGGTGGAAAAGCGACGGTGGAAATGCGCCGGAAAGCCTTTAAAAAACGGAAGAGCAAATACGCCGGAAAGTTTTACCAAAGATAGATTTATTTTTTTGGAGGAAAAATTAGAAAATTGA

mRNA sequence

ATGGTGGAAAAACGGAAGAGAAAGCGACGGTGGAAAAACGGAAGAGAAAGCTACGGTGGAAAAGCTACGGTGGAAAAGCGACGGTGGAAATGCGCCGGAAAGCCTTTAAAAAACGGAAGAGCAAATACGCCGGAAAGTTTTACCAAAGATAGATTTATTTTTTTGGAGGAAAAATTAGAAAATTGA

Coding sequence (CDS)

ATGGTGGAAAAACGGAAGAGAAAGCGACGGTGGAAAAACGGAAGAGAAAGCTACGGTGGAAAAGCTACGGTGGAAAAGCGACGGTGGAAATGCGCCGGAAAGCCTTTAAAAAACGGAAGAGCAAATACGCCGGAAAGTTTTACCAAAGATAGATTTATTTTTTTGGAGGAAAAATTAGAAAATTGA

Protein sequence

MVEKRKRKRRWKNGRESYGGKATVEKRRWKCAGKPLKNGRANTPESFTKDRFIFLEEKLEN

Homology

[Close]

BLAST of IVF0026580 vs. ExPASy TrEMBL
Match: A0A5D3C603 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00490 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.5e-04
Identity = 34/67 (50.75%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 4  KRKRKRRWKNGRESYGGKATVE-------KRRWKCAGKPLKNGRANTPESFT---KDRFI 61
          +RKRKRRWKNG+ESYGGKATVE       KR+ KC GKPL+  + +          D   
Sbjct: 10 RRKRKRRWKNGKESYGGKATVEMRQKAFKKRKNKCTGKPLQKMKYHVKNKDIWKFLDGIY 69

[Close]

BLAST of IVF0026580 vs. NCBI nr
Match: TYK07333.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 1.68e-06
Identity = 34/67 (50.75%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 4  KRKRKRRWKNGRESYGGKATVE-------KRRWKCAGKPLKNGRANTPESFT---KDRFI 60
          +RKRKRRWKNG+ESYGGKATVE       KR+ KC GKPL+  + +          D   
Sbjct: 10 RRKRKRRWKNGKESYGGKATVEMRQKAFKKRKNKCTGKPLQKMKYHVKNKDIWKFLDGIY 69

[Close]

BLAST of IVF0026580 vs. NCBI nr
Match: KAA0025432.1 (uncharacterized protein E6C27_scaffold417G00170 [Cucumis melo var. makuwa] >TYK04751.1 uncharacterized protein E5676_scaffold68G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 50.8 bits (120), Expect = 2.69e-05
Identity = 36/63 (57.14%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 1  MVEKR-KRKRRWKNGRESYGGKATVEKRRWKCAGKPL---KNGRANTPESFTKDRFIFLE 59
          MVEKR KRKRRWKNGRESYGGKA  EKR  K   K     K    N  ES  +  FIFL 
Sbjct: 1  MVEKRRKRKRRWKNGRESYGGKAMEEKRMVKKRRKRKRRWKRDSGNVLESLYRRWFIFLG 60

The following BLAST results are available for this feature:

BLAST of IVF0026580 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C603	3.5e-04	50.75	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of IVF0026580 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07333.1	1.68e-06	50.75	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0025432.1	2.69e-05	57.14	uncharacterized protein E6C27_scaffold417G00170 [Cucumis melo var. makuwa] >TYK0...	[more]

BLAST of IVF0026580 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026580.1	IVF0026580.1	mRNA