IVF0026572 (gene) Melon (IVF77) v1

Overview
NameIVF0026572
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr10: 15672317 .. 15672721 (-)
RNA-Seq ExpressionIVF0026572
SyntenyIVF0026572
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCAGCCGAGAAGATCGTCATCTCAAATATGTTGCAGTAAGAAGATCTTCATCTCCAATAGGTTGCATCAAGAGGATGATCATCTCAAACATGTTACAGCCGAGGAGGTCATTGCCTCAAATATGTTGCATCCGAGAAGACCATCGTCTCAAATATGTTGTAGCCGAGAAGGTCGATGTCTCAAATATGTTGTAGCTGAGAAGGTCGTCGTCTCAAATATGTTTAGCCGAGAAGGTCGTCGTCTCAAATATGTTGTAGCCGAGAAGGTCATCGTCTCAAATATGTTGCAATCGAGGCGATCAACATCTTCATCTTCATGTGGCGCAAGCAATCATCATCTTCGGCGCGCGCGATCATCATCTTCAATGAAGAACGACGCAGGCGATCATCATCTTCAATAA

mRNA sequence

ATGTTGCAGCCGAGAAGATCGTCATCTCAAATATGTTGCAGTAAGAAGATCTTCATCTCCAATAGGTTGCATCAAGAGGATGATCATCTCAAACATGTTACAGCCGAGGAGGTCATTGCCTCAAATATGTTGCATCCGAGAAGACCATCGTCTCAAATATGTTGTAGCCGAGAAGGTCGATGTCTCAAATATGTTGTAGCTGAGAAGGTCGTCGTCTCAAATATGTTTAGCCGAGAAGGTCGTCGTCTCAAATATGTTGTAGCCGAGAAGGTCATCGTCTCAAATATGTTGCAATCGAGGCGATCAACATCTTCATCTTCATGTGGCGCAAGCAATCATCATCTTCGGCGCGCGCGATCATCATCTTCAATGAAGAACGACGCAGGCGATCATCATCTTCAATAA

Coding sequence (CDS)

ATGTTGCAGCCGAGAAGATCGTCATCTCAAATATGTTGCAGTAAGAAGATCTTCATCTCCAATAGGTTGCATCAAGAGGATGATCATCTCAAACATGTTACAGCCGAGGAGGTCATTGCCTCAAATATGTTGCATCCGAGAAGACCATCGTCTCAAATATGTTGTAGCCGAGAAGGTCGATGTCTCAAATATGTTGTAGCTGAGAAGGTCGTCGTCTCAAATATGTTTAGCCGAGAAGGTCGTCGTCTCAAATATGTTGTAGCCGAGAAGGTCATCGTCTCAAATATGTTGCAATCGAGGCGATCAACATCTTCATCTTCATGTGGCGCAAGCAATCATCATCTTCGGCGCGCGCGATCATCATCTTCAATGAAGAACGACGCAGGCGATCATCATCTTCAATAA

Protein sequence

MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ
Homology
BLAST of IVF0026572 vs. ExPASy TrEMBL
Match: A0A5A7T154 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00780 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.4e-66
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR 60
           MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR
Sbjct: 555 MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR 614

Query: 61  CLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCGASNHHLRRARS 120
           CLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCGASNHHLRRARS
Sbjct: 615 CLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCGASNHHLRRARS 674

Query: 121 SSSMKNDAGDHHLQ 135
           SSSMKNDAGDHHLQ
Sbjct: 675 SSSMKNDAGDHHLQ 688

BLAST of IVF0026572 vs. ExPASy TrEMBL
Match: A0A5A7UWX8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00740 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 7.2e-26
Identity = 82/145 (56.55%), Postives = 91/145 (62.76%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR 60
           MLQ RRS SQ C S+++            LK+V  E+VI SNML PRR SSQICC++E R
Sbjct: 670 MLQLRRSISQTCYSREV----------HRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIR 729

Query: 61  CLKYVVAEKVVVSNMF-----------SREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCG 120
            LKYV AEKVVVSNM            SREGRRLKYV              RST SSSCG
Sbjct: 730 HLKYVAAEKVVVSNMLQPRRSLSQICCSREGRRLKYVA-----------PGRSTPSSSCG 789

Query: 121 ASNHHLRRARSSSSMKNDAGDHHLQ 135
           ASNHHLR A+SSSSM N+A DHHLQ
Sbjct: 790 ASNHHLRCAQSSSSMSNNADDHHLQ 793

BLAST of IVF0026572 vs. ExPASy TrEMBL
Match: A0A5D3C8K3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00620 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 7.2e-26
Identity = 82/145 (56.55%), Postives = 91/145 (62.76%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR 60
           MLQ RRS SQ C S+++            LK+V  E+VI SNML PRR SSQICC++E R
Sbjct: 670 MLQLRRSISQTCYSREV----------HRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIR 729

Query: 61  CLKYVVAEKVVVSNMF-----------SREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCG 120
            LKYV AEKVVVSNM            SREGRRLKYV              RST SSSCG
Sbjct: 730 HLKYVAAEKVVVSNMLQPRRSLSQICCSREGRRLKYVA-----------PGRSTPSSSCG 789

Query: 121 ASNHHLRRARSSSSMKNDAGDHHLQ 135
           ASNHHLR A+SSSSM N+A DHHLQ
Sbjct: 790 ASNHHLRCAQSSSSMSNNADDHHLQ 793

BLAST of IVF0026572 vs. ExPASy TrEMBL
Match: A0A5D3BNW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00180 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 9.4e-26
Identity = 83/161 (51.55%), Postives = 97/161 (60.25%), Query Frame = 0

Query: 1   MLQPR---RSSSQICCSK-----------KIFISNRLH-----------QEDDHLKHVTA 60
           +LQPR    SSS +CCS+           K+  SN LH           ++   LK+VT 
Sbjct: 85  VLQPRGSSSSSSHMCCSREARHLKHVTAEKVITSNMLHSRRPSSQICYSRDGCRLKYVTV 144

Query: 61  EEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMF--SREGRRLKYVVAEKVIV 120
           E+VI SNML  RR SSQICCSREGR LKYV  EKVVVSNM   S+EGR LKYV+AEKV V
Sbjct: 145 EKVIISNMLQSRRSSSQICCSREGRRLKYVAVEKVVVSNMLQPSQEGRHLKYVIAEKVAV 204

Query: 121 SNMLQSRRSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ 135
           SNMLQ RRS+S   C   N HL    + + +   A DHHLQ
Sbjct: 205 SNMLQPRRSSSQICCNRGNQHLHLHVAQAIIIFGALDHHLQ 245

BLAST of IVF0026572 vs. ExPASy TrEMBL
Match: A0A5A7VE10 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G001670 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.8e-21
Identity = 70/127 (55.12%), Postives = 77/127 (60.63%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR 60
           ML  RRSSSQIC            QE  HLK+V  E+V+ SNML  RR S QICCSREGR
Sbjct: 23  MLSSRRSSSQIC----------YRQEGRHLKYVAVEKVVVSNMLQLRRSSFQICCSREGR 82

Query: 61  CLKYVVAEKVVVSNMF-----------SREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCG 117
            LKYVV EK+VVSNM            S+E RRLKYV  EKVIVSNMLQSR S+S   C 
Sbjct: 83  RLKYVVVEKIVVSNMLQSRMSSSHICCSQECRRLKYVAIEKVIVSNMLQSRISSSQICCS 139

BLAST of IVF0026572 vs. NCBI nr
Match: KAA0035946.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30454.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 263 bits (672), Expect = 1.22e-81
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR 60
           MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR
Sbjct: 555 MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR 614

Query: 61  CLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCGASNHHLRRARS 120
           CLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCGASNHHLRRARS
Sbjct: 615 CLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCGASNHHLRRARS 674

Query: 121 SSSMKNDAGDHHLQ 134
           SSSMKNDAGDHHLQ
Sbjct: 675 SSSMKNDAGDHHLQ 688

BLAST of IVF0026572 vs. NCBI nr
Match: KAA0060518.1 (hypothetical protein E6C27_scaffold22G003700 [Cucumis melo var. makuwa] >TYK00758.1 hypothetical protein E5676_scaffold420G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (320), Expect = 2.72e-33
Identity = 83/161 (51.55%), Postives = 97/161 (60.25%), Query Frame = 0

Query: 1   MLQPR---RSSSQICCSK-----------KIFISNRLH-----------QEDDHLKHVTA 60
           +LQPR    SSS +CCS+           K+  SN LH           ++   LK+VT 
Sbjct: 85  VLQPRGSSSSSSHMCCSREARHLKHVTAEKVITSNMLHSRRPSSQICYSRDGCRLKYVTV 144

Query: 61  EEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMF--SREGRRLKYVVAEKVIV 120
           E+VI SNML  RR SSQICCSREGR LKYV  EKVVVSNM   S+EGR LKYV+AEKV V
Sbjct: 145 EKVIISNMLQSRRSSSQICCSREGRRLKYVAVEKVVVSNMLQPSQEGRHLKYVIAEKVAV 204

Query: 121 SNMLQSRRSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ 134
           SNMLQ RRS+S   C   N HL    + + +   A DHHLQ
Sbjct: 205 SNMLQPRRSSSQICCNRGNQHLHLHVAQAIIIFGALDHHLQ 245

BLAST of IVF0026572 vs. NCBI nr
Match: TYK08171.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (323), Expect = 1.66e-31
Identity = 82/145 (56.55%), Postives = 91/145 (62.76%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR 60
           MLQ RRS SQ C S+++            LK+V  E+VI SNML PRR SSQICC++E R
Sbjct: 670 MLQLRRSISQTCYSREVH----------RLKYVVTEKVIVSNMLQPRRSSSQICCNQEIR 729

Query: 61  CLKYVVAEKVVVSNMF-----------SREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCG 120
            LKYV AEKVVVSNM            SREGRRLKYV              RST SSSCG
Sbjct: 730 HLKYVAAEKVVVSNMLQPRRSLSQICCSREGRRLKYVAPG-----------RSTPSSSCG 789

Query: 121 ASNHHLRRARSSSSMKNDAGDHHLQ 134
           ASNHHLR A+SSSSM N+A DHHLQ
Sbjct: 790 ASNHHLRCAQSSSSMSNNADDHHLQ 793

BLAST of IVF0026572 vs. NCBI nr
Match: KAA0059640.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (323), Expect = 1.66e-31
Identity = 82/145 (56.55%), Postives = 91/145 (62.76%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR 60
           MLQ RRS SQ C S+++            LK+V  E+VI SNML PRR SSQICC++E R
Sbjct: 670 MLQLRRSISQTCYSREVH----------RLKYVVTEKVIVSNMLQPRRSSSQICCNQEIR 729

Query: 61  CLKYVVAEKVVVSNMF-----------SREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCG 120
            LKYV AEKVVVSNM            SREGRRLKYV              RST SSSCG
Sbjct: 730 HLKYVAAEKVVVSNMLQPRRSLSQICCSREGRRLKYVAPG-----------RSTPSSSCG 789

Query: 121 ASNHHLRRARSSSSMKNDAGDHHLQ 134
           ASNHHLR A+SSSSM N+A DHHLQ
Sbjct: 790 ASNHHLRCAQSSSSMSNNADDHHLQ 793

BLAST of IVF0026572 vs. NCBI nr
Match: KAA0066592.1 (hypothetical protein E6C27_scaffold25G001670 [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (281), Expect = 1.14e-28
Identity = 69/119 (57.98%), Postives = 75/119 (63.03%), Query Frame = 0

Query: 1   MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR 60
           ML  RRSSSQIC            QE  HLK+V  E+V+ SNML  RR S QICCSREGR
Sbjct: 23  MLSSRRSSSQIC----------YRQEGRHLKYVAVEKVVVSNMLQLRRSSFQICCSREGR 82

Query: 61  CLKYVVAEKVVVSNMF-----------SREGRRLKYVVAEKVIVSNMLQSRRSTSSSSC 108
            LKYVV EK+VVSNM            S+E RRLKYV  EKVIVSNMLQSR S+S   C
Sbjct: 83  RLKYVVVEKIVVSNMLQSRMSSSHICCSQECRRLKYVAIEKVIVSNMLQSRISSSQICC 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T1541.4e-66100.00Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7UWX87.2e-2656.55Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3C8K37.2e-2656.55Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BNW39.4e-2651.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VE101.8e-2155.12Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0035946.11.22e-81100.00ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30454.1 ty3-gyp... [more]
KAA0060518.12.72e-3351.55hypothetical protein E6C27_scaffold22G003700 [Cucumis melo var. makuwa] >TYK0075... [more]
TYK08171.11.66e-3156.55ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0059640.11.66e-3156.55ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0066592.11.14e-2857.98hypothetical protein E6C27_scaffold25G001670 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0026572.2IVF0026572.2mRNA