Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCAGCCGAGAAGATCGTCATCTCAAATATGTTGCAGTAAGAAGATCTTCATCTCCAATAGGTTGCATCAAGAGGATGATCATCTCAAACATGTTACAGCCGAGGAGGTCATTGCCTCAAATATGTTGCATCCGAGAAGACCATCGTCTCAAATATGTTGTAGCCGAGAAGGTCGATGTCTCAAATATGTTGTAGCTGAGAAGGTCGTCGTCTCAAATATGTTTAGCCGAGAAGGTCGTCGTCTCAAATATGTTGTAGCCGAGAAGGTCATCGTCTCAAATATGTTGCAATCGAGGCGATCAACATCTTCATCTTCATGTGGCGCAAGCAATCATCATCTTCGGCGCGCGCGATCATCATCTTCAATGAAGAACGACGCAGGCGATCATCATCTTCAATAA
mRNA sequence
ATGTTGCAGCCGAGAAGATCGTCATCTCAAATATGTTGCAGTAAGAAGATCTTCATCTCCAATAGGTTGCATCAAGAGGATGATCATCTCAAACATGTTACAGCCGAGGAGGTCATTGCCTCAAATATGTTGCATCCGAGAAGACCATCGTCTCAAATATGTTGTAGCCGAGAAGGTCGATGTCTCAAATATGTTGTAGCTGAGAAGGTCGTCGTCTCAAATATGTTTAGCCGAGAAGGTCGTCGTCTCAAATATGTTGTAGCCGAGAAGGTCATCGTCTCAAATATGTTGCAATCGAGGCGATCAACATCTTCATCTTCATGTGGCGCAAGCAATCATCATCTTCGGCGCGCGCGATCATCATCTTCAATGAAGAACGACGCAGGCGATCATCATCTTCAATAA
Coding sequence (CDS)
ATGTTGCAGCCGAGAAGATCGTCATCTCAAATATGTTGCAGTAAGAAGATCTTCATCTCCAATAGGTTGCATCAAGAGGATGATCATCTCAAACATGTTACAGCCGAGGAGGTCATTGCCTCAAATATGTTGCATCCGAGAAGACCATCGTCTCAAATATGTTGTAGCCGAGAAGGTCGATGTCTCAAATATGTTGTAGCTGAGAAGGTCGTCGTCTCAAATATGTTTAGCCGAGAAGGTCGTCGTCTCAAATATGTTGTAGCCGAGAAGGTCATCGTCTCAAATATGTTGCAATCGAGGCGATCAACATCTTCATCTTCATGTGGCGCAAGCAATCATCATCTTCGGCGCGCGCGATCATCATCTTCAATGAAGAACGACGCAGGCGATCATCATCTTCAATAA
Protein sequence
MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ
Homology
BLAST of IVF0026572 vs. ExPASy TrEMBL
Match:
A0A5A7T154 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00780 PE=4 SV=1)
HSP 1 Score: 261.9 bits (668), Expect = 1.4e-66
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
Query: 1 MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR 60
MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR
Sbjct: 555 MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR 614
Query: 61 CLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCGASNHHLRRARS 120
CLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCGASNHHLRRARS
Sbjct: 615 CLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCGASNHHLRRARS 674
Query: 121 SSSMKNDAGDHHLQ 135
SSSMKNDAGDHHLQ
Sbjct: 675 SSSMKNDAGDHHLQ 688
BLAST of IVF0026572 vs. ExPASy TrEMBL
Match:
A0A5A7UWX8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00740 PE=4 SV=1)
HSP 1 Score: 126.7 bits (317), Expect = 7.2e-26
Identity = 82/145 (56.55%), Postives = 91/145 (62.76%), Query Frame = 0
Query: 1 MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR 60
MLQ RRS SQ C S+++ LK+V E+VI SNML PRR SSQICC++E R
Sbjct: 670 MLQLRRSISQTCYSREV----------HRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIR 729
Query: 61 CLKYVVAEKVVVSNMF-----------SREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCG 120
LKYV AEKVVVSNM SREGRRLKYV RST SSSCG
Sbjct: 730 HLKYVAAEKVVVSNMLQPRRSLSQICCSREGRRLKYVA-----------PGRSTPSSSCG 789
Query: 121 ASNHHLRRARSSSSMKNDAGDHHLQ 135
ASNHHLR A+SSSSM N+A DHHLQ
Sbjct: 790 ASNHHLRCAQSSSSMSNNADDHHLQ 793
BLAST of IVF0026572 vs. ExPASy TrEMBL
Match:
A0A5D3C8K3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00620 PE=4 SV=1)
HSP 1 Score: 126.7 bits (317), Expect = 7.2e-26
Identity = 82/145 (56.55%), Postives = 91/145 (62.76%), Query Frame = 0
Query: 1 MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR 60
MLQ RRS SQ C S+++ LK+V E+VI SNML PRR SSQICC++E R
Sbjct: 670 MLQLRRSISQTCYSREV----------HRLKYVVTEKVIVSNMLQPRRSSSQICCNQEIR 729
Query: 61 CLKYVVAEKVVVSNMF-----------SREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCG 120
LKYV AEKVVVSNM SREGRRLKYV RST SSSCG
Sbjct: 730 HLKYVAAEKVVVSNMLQPRRSLSQICCSREGRRLKYVA-----------PGRSTPSSSCG 789
Query: 121 ASNHHLRRARSSSSMKNDAGDHHLQ 135
ASNHHLR A+SSSSM N+A DHHLQ
Sbjct: 790 ASNHHLRCAQSSSSMSNNADDHHLQ 793
BLAST of IVF0026572 vs. ExPASy TrEMBL
Match:
A0A5D3BNW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00180 PE=4 SV=1)
HSP 1 Score: 126.3 bits (316), Expect = 9.4e-26
Identity = 83/161 (51.55%), Postives = 97/161 (60.25%), Query Frame = 0
Query: 1 MLQPR---RSSSQICCSK-----------KIFISNRLH-----------QEDDHLKHVTA 60
+LQPR SSS +CCS+ K+ SN LH ++ LK+VT
Sbjct: 85 VLQPRGSSSSSSHMCCSREARHLKHVTAEKVITSNMLHSRRPSSQICYSRDGCRLKYVTV 144
Query: 61 EEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMF--SREGRRLKYVVAEKVIV 120
E+VI SNML RR SSQICCSREGR LKYV EKVVVSNM S+EGR LKYV+AEKV V
Sbjct: 145 EKVIISNMLQSRRSSSQICCSREGRRLKYVAVEKVVVSNMLQPSQEGRHLKYVIAEKVAV 204
Query: 121 SNMLQSRRSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ 135
SNMLQ RRS+S C N HL + + + A DHHLQ
Sbjct: 205 SNMLQPRRSSSQICCNRGNQHLHLHVAQAIIIFGALDHHLQ 245
BLAST of IVF0026572 vs. ExPASy TrEMBL
Match:
A0A5A7VE10 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G001670 PE=4 SV=1)
HSP 1 Score: 112.1 bits (279), Expect = 1.8e-21
Identity = 70/127 (55.12%), Postives = 77/127 (60.63%), Query Frame = 0
Query: 1 MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR 60
ML RRSSSQIC QE HLK+V E+V+ SNML RR S QICCSREGR
Sbjct: 23 MLSSRRSSSQIC----------YRQEGRHLKYVAVEKVVVSNMLQLRRSSFQICCSREGR 82
Query: 61 CLKYVVAEKVVVSNMF-----------SREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCG 117
LKYVV EK+VVSNM S+E RRLKYV EKVIVSNMLQSR S+S C
Sbjct: 83 RLKYVVVEKIVVSNMLQSRMSSSHICCSQECRRLKYVAIEKVIVSNMLQSRISSSQICCS 139
BLAST of IVF0026572 vs. NCBI nr
Match:
KAA0035946.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30454.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 263 bits (672), Expect = 1.22e-81
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
Query: 1 MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR 60
MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR
Sbjct: 555 MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR 614
Query: 61 CLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCGASNHHLRRARS 120
CLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCGASNHHLRRARS
Sbjct: 615 CLKYVVAEKVVVSNMFSREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCGASNHHLRRARS 674
Query: 121 SSSMKNDAGDHHLQ 134
SSSMKNDAGDHHLQ
Sbjct: 675 SSSMKNDAGDHHLQ 688
BLAST of IVF0026572 vs. NCBI nr
Match:
KAA0060518.1 (hypothetical protein E6C27_scaffold22G003700 [Cucumis melo var. makuwa] >TYK00758.1 hypothetical protein E5676_scaffold420G00180 [Cucumis melo var. makuwa])
HSP 1 Score: 127 bits (320), Expect = 2.72e-33
Identity = 83/161 (51.55%), Postives = 97/161 (60.25%), Query Frame = 0
Query: 1 MLQPR---RSSSQICCSK-----------KIFISNRLH-----------QEDDHLKHVTA 60
+LQPR SSS +CCS+ K+ SN LH ++ LK+VT
Sbjct: 85 VLQPRGSSSSSSHMCCSREARHLKHVTAEKVITSNMLHSRRPSSQICYSRDGCRLKYVTV 144
Query: 61 EEVIASNMLHPRRPSSQICCSREGRCLKYVVAEKVVVSNMF--SREGRRLKYVVAEKVIV 120
E+VI SNML RR SSQICCSREGR LKYV EKVVVSNM S+EGR LKYV+AEKV V
Sbjct: 145 EKVIISNMLQSRRSSSQICCSREGRRLKYVAVEKVVVSNMLQPSQEGRHLKYVIAEKVAV 204
Query: 121 SNMLQSRRSTSSSSCGASNHHLRRARSSSSMKNDAGDHHLQ 134
SNMLQ RRS+S C N HL + + + A DHHLQ
Sbjct: 205 SNMLQPRRSSSQICCNRGNQHLHLHVAQAIIIFGALDHHLQ 245
BLAST of IVF0026572 vs. NCBI nr
Match:
TYK08171.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 129 bits (323), Expect = 1.66e-31
Identity = 82/145 (56.55%), Postives = 91/145 (62.76%), Query Frame = 0
Query: 1 MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR 60
MLQ RRS SQ C S+++ LK+V E+VI SNML PRR SSQICC++E R
Sbjct: 670 MLQLRRSISQTCYSREVH----------RLKYVVTEKVIVSNMLQPRRSSSQICCNQEIR 729
Query: 61 CLKYVVAEKVVVSNMF-----------SREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCG 120
LKYV AEKVVVSNM SREGRRLKYV RST SSSCG
Sbjct: 730 HLKYVAAEKVVVSNMLQPRRSLSQICCSREGRRLKYVAPG-----------RSTPSSSCG 789
Query: 121 ASNHHLRRARSSSSMKNDAGDHHLQ 134
ASNHHLR A+SSSSM N+A DHHLQ
Sbjct: 790 ASNHHLRCAQSSSSMSNNADDHHLQ 793
BLAST of IVF0026572 vs. NCBI nr
Match:
KAA0059640.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 129 bits (323), Expect = 1.66e-31
Identity = 82/145 (56.55%), Postives = 91/145 (62.76%), Query Frame = 0
Query: 1 MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR 60
MLQ RRS SQ C S+++ LK+V E+VI SNML PRR SSQICC++E R
Sbjct: 670 MLQLRRSISQTCYSREVH----------RLKYVVTEKVIVSNMLQPRRSSSQICCNQEIR 729
Query: 61 CLKYVVAEKVVVSNMF-----------SREGRRLKYVVAEKVIVSNMLQSRRSTSSSSCG 120
LKYV AEKVVVSNM SREGRRLKYV RST SSSCG
Sbjct: 730 HLKYVAAEKVVVSNMLQPRRSLSQICCSREGRRLKYVAPG-----------RSTPSSSCG 789
Query: 121 ASNHHLRRARSSSSMKNDAGDHHLQ 134
ASNHHLR A+SSSSM N+A DHHLQ
Sbjct: 790 ASNHHLRCAQSSSSMSNNADDHHLQ 793
BLAST of IVF0026572 vs. NCBI nr
Match:
KAA0066592.1 (hypothetical protein E6C27_scaffold25G001670 [Cucumis melo var. makuwa])
HSP 1 Score: 112 bits (281), Expect = 1.14e-28
Identity = 69/119 (57.98%), Postives = 75/119 (63.03%), Query Frame = 0
Query: 1 MLQPRRSSSQICCSKKIFISNRLHQEDDHLKHVTAEEVIASNMLHPRRPSSQICCSREGR 60
ML RRSSSQIC QE HLK+V E+V+ SNML RR S QICCSREGR
Sbjct: 23 MLSSRRSSSQIC----------YRQEGRHLKYVAVEKVVVSNMLQLRRSSFQICCSREGR 82
Query: 61 CLKYVVAEKVVVSNMF-----------SREGRRLKYVVAEKVIVSNMLQSRRSTSSSSC 108
LKYVV EK+VVSNM S+E RRLKYV EKVIVSNMLQSR S+S C
Sbjct: 83 RLKYVVVEKIVVSNMLQSRMSSSHICCSQECRRLKYVAIEKVIVSNMLQSRISSSQICC 131
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7T154 | 1.4e-66 | 100.00 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7UWX8 | 7.2e-26 | 56.55 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5D3C8K3 | 7.2e-26 | 56.55 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5D3BNW3 | 9.4e-26 | 51.55 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7VE10 | 1.8e-21 | 55.12 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0035946.1 | 1.22e-81 | 100.00 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30454.1 ty3-gyp... | [more] |
KAA0060518.1 | 2.72e-33 | 51.55 | hypothetical protein E6C27_scaffold22G003700 [Cucumis melo var. makuwa] >TYK0075... | [more] |
TYK08171.1 | 1.66e-31 | 56.55 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0059640.1 | 1.66e-31 | 56.55 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0066592.1 | 1.14e-28 | 57.98 | hypothetical protein E6C27_scaffold25G001670 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |