IVF0026560 (gene) Melon (IVF77) v1

Overview


Name	IVF0026560
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Nucleoid-associated protein
Location	chr02: 11826488 .. 11829651 (+)
RNA-Seq Expression	IVF0026560
Synteny	IVF0026560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGACAATATCTCTGAGTGCTCAGCTGCCAAATCTCCGAGGAATTTCTGATTTGAAGAAACGAAGTTAGTCCCATTCTTCAACTCTTTTCTCTCTTTTTCATTTTCTTTTGTTTGCTGATACCTTAGGAATTTGAGTTTTTCGATCCATTGCTGTATCTCTGAATTTAATTCGTTGCTTGGGACTTACTTCTCTATTGTATAGTTTGTACCTACTCAATCTAACGGTGGGATCTAAGTTGGTGCGGGTGGTTAGTATGGCGTAGTTTGGGAAGATTTGCCAATCGGTTGAAGTTTAGACCCTAAATAGAATTGTCTGGCGGTGTCCTTAGTTCTTATTACTGGATGGGTTATGTTCATTTCTATTCAAGAAATTATTGTTTTTTCGTATAATTAAAGTAAAATTGCGATAGGCGAGTGGGGGAGATTCTCTTGATTTCAACTTGGAGGCAGATGCGTCTTGTGTAGTCTATTGAACTTAAAAGAGAAAGGCTGTGTTCTGGGTAATTTACTTGAAAACTATTTAATAAGTTTGGATAGGCCTCAAAACTTTCTACCTAACTTAGACGTGAGTAGTGTTTTATAAAGCTCAAGGTGCCAAAGAAAAAGAAAAAACGGAATTTTGCATTTAGGCTTAATAAATTTGATTCTTTTTTTAGTTAATAAAGAAGGACAAGCCCTTATTATTACTATTTTCTTAAAATAATAAAAAAGCCTCACAGCCCAGAGGAGTCGCGCCTTATTTTGTGAACCTATCTTTCTTTTAAAGGCGTGGTGCCTTTTAAACCCCTGGTTGTGAGAGTAATTTCGTGGAAAAGTTTATTGAGAAGGAATGGCATGAACCTGTCAAGTTTAATTCTTAATTTATAGTATGGACTGAAGCTGGTTGCATATCTGATAATGCCAATGTCAGAACTGAATAAATCCCATGTCTGCTTCATGAGAACTCTTTAACAAACTAGATACATCAAAAGAAACAGGGCTGGTTTCAAATGAGTTTTTAAGTGCTGAAACAAGCGTTTTCAATTGCACAAAGTGTTTTTACGTATTCAGGAAGTCATTCCAAACAGAACCTTAGCTGTGTAGGACTGTTTTAGAATTTAGTGTTTTATTTTCTGTAATTTGCAATTTGAATATAATATTTTGGAGTTTGGACGATAAAAATTTCCAATTTTCCATTCTGAAATTGGAAACGAAGTCCACTCTTTGTGAAATTTGATTGTACACAATACACTTATTAATGCATGATTATCTTTTTCTGTCTGCCTCTTACAGGCAACTTAAATTTGATGTCAAATATAGTTGGTACACGACTCTCACCTTATGGTCCTTGGAAAGTTGAAAAAAATAATAGATCTCTTTGCGTTTATGGTCTATTTGGAGGAAAAAAGGATGAGGAGAAGAGTGATGATGCACCTTCAAAGGTAGAACTTTTATCTGCAATATGATTATAAACATCATAAATTTTGAATCATGCTCAACAAAATTGTCATTTTCAGTAATTTAGATATAAACAGAAATGTTTATCATATTTAAGAGACTGAAAGTGACTTTTGTTTGCAAGTGAGGTGAGACCATCGTTACTTACATTCTAACTTTTTTTAGGCAGGAATCTTTGGAAACATGCAGAAGTTATATGAAACTGTGAGGACAGCGCAAAAGGTTGTCCAAGTAGAGGCAGTACGTGTACAAAAAGAACTTGCAGCGTAAGACCAAACAAGTTAAATAAATGTAATGCCACTTGGAGATGTCTTTATCTGTTTTACGAAGTTGTCTGAATCTTTTTTTTTCCCTTCCATGTTTCTGTTTTCCAGGGCAGAGTTTGATGGCTACTGTGAAGGAGAGCTAATAAAGGTATGTCCTGCCTTCCTCTCTTGCATCCAGTTCATTTTCACTTTGCCAAGAACTATACGATCAAAAAGGTTGTTAGAGAAGTGAACATGTGCTTCATTTTTGCTTACAATTGTAAATATGAACAGATTCTAGAGGAATGACTTGAATTTATCTTGGGTACTACTTAAAAGGATGCCATGTCTAGAGTTTGTGATTACTAATCTTTCTATGTCGTTTTAAGATGATAAGTGTATTCTATCATTATATTCAACCGGGTTGTATTGGAATTAAAATCTCTTGGGGTCATCTCCCTGAGATGTTAATTGTTCTGAAATATTTTTGTTCCATCAATCGATAGTGTTCCGGTGTTGATTCCCATGGACATGAAAAGGACAGCGAATTTTGAAAAAGAAAAAAATCACGATTTATCGAAAGAATTAAATAAGCATTGAGCTTGCGACAGAAGGTTTTTGATTTGACAATTGGTTTCATACAAGGCCTAGCATAGCCTTTTCATTTAATGAAAATTATTATATAAAAGAATGGGTTCATATCATGTTTGAATATCTCCTCATATCTACCCTAATATTTTTCTGTCGACTAATATAGGTGACATTATCCGGGAATCAGCAACCTATTCGCACAGAGATAACGGAGGCTGCAATGGAATTAGGACCAGAAGTGAGTATGCACGATGCTGTAGACTGTAATGCACTCTAACATTTAGCATTTTTACATTGAACTTCTCTTTACATCCACTCAAGTCACAACTTAATGCTGCACCACCTGTCATGTCCTCAATCCAAGCTTGGAGTATATCTTCTCTTGGTGCTAGGTGGAATAATGACTTTTCACACCACGTGAGTTTGAAAATTGGCTGGCTACAGGAATAAGACCCGCCAACATTGGCACATGGCTCAAAAAAGTTTGACAAGTTGACAACCATACTTGAATATTTTAAGAATAGTTACCAGTAACATTTGTAAAAGTTATGGTCCCTAGGATAGTTCTTGAATGGGTGTTTTCCATTGTGAAATAGGCCAGAAAATTTCTGAACGTGGTTAATGATGGATTTCATATTCCAAAAAAAGAAATATTCAGATCTTTACTTTCTTATGCAGAAACTTTCCCTTCTTGTTACTGAAGCTTATCAGGACGCACATCAGAAGAGCGTTCAGGTAAGAATTCTTCCAGTAATTTAATTAACAAGTTTTGTTTCTTCAGAACTGACTATTGACTCTATGATTCTCAGGCCATGAAACAAAGAATGAGTGATCTTGCCCAGAGCTTAGGCATGCCCCAGGGACTCAGTGAGGGATTAAAGTAG

mRNA sequence

ATGGCGTCGACAATATCTCTGAGTGCTCAGCTGCCAAATCTCCGAGGAATTTCTGATTTGAAGAAACGAAGCAACTTAAATTTGATGTCAAATATAGTTGGTACACGACTCTCACCTTATGGTCCTTGGAAAGTTGAAAAAAATAATAGATCTCTTTGCGTTTATGGTCTATTTGGAGGAAAAAAGGATGAGGAGAAGAGTGATGATGCACCTTCAAAGGCAGGAATCTTTGGAAACATGCAGAAGTTATATGAAACTGTGAGGACAGCGCAAAAGGTTGTCCAAGTAGAGGCAGTACGTGTACAAAAAGAACTTGCAGCGGCAGAGTTTGATGGCTACTGTGAAGGAGAGCTAATAAAGGTGACATTATCCGGGAATCAGCAACCTATTCGCACAGAGATAACGGAGGCTGCAATGGAATTAGGACCAGAAAAACTTTCCCTTCTTGTTACTGAAGCTTATCAGGACGCACATCAGAAGAGCGTTCAGGCCATGAAACAAAGAATGAGTGATCTTGCCCAGAGCTTAGGCATGCCCCAGGGACTCAGTGAGGGATTAAAGTAG

Coding sequence (CDS)

ATGGCGTCGACAATATCTCTGAGTGCTCAGCTGCCAAATCTCCGAGGAATTTCTGATTTGAAGAAACGAAGCAACTTAAATTTGATGTCAAATATAGTTGGTACACGACTCTCACCTTATGGTCCTTGGAAAGTTGAAAAAAATAATAGATCTCTTTGCGTTTATGGTCTATTTGGAGGAAAAAAGGATGAGGAGAAGAGTGATGATGCACCTTCAAAGGCAGGAATCTTTGGAAACATGCAGAAGTTATATGAAACTGTGAGGACAGCGCAAAAGGTTGTCCAAGTAGAGGCAGTACGTGTACAAAAAGAACTTGCAGCGGCAGAGTTTGATGGCTACTGTGAAGGAGAGCTAATAAAGGTGACATTATCCGGGAATCAGCAACCTATTCGCACAGAGATAACGGAGGCTGCAATGGAATTAGGACCAGAAAAACTTTCCCTTCTTGTTACTGAAGCTTATCAGGACGCACATCAGAAGAGCGTTCAGGCCATGAAACAAAGAATGAGTGATCTTGCCCAGAGCTTAGGCATGCCCCAGGGACTCAGTGAGGGATTAAAGTAG

Protein sequence

MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGGKKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQGLSEGLK

Homology

[Close]

BLAST of IVF0026560 vs. ExPASy Swiss-Prot
Match: O82230 (Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=STIC2 PE=1 SV=2)

HSP 1 Score: 212.6 bits (540), Expect = 3.8e-54
Identity = 112/145 (77.24%), Postives = 123/145 (84.83%), Query Frame = 0


Query: 43  WKVEKNNRSLCVYGLFGGKKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQ 102
           +K +   RSL V GLFGG   +  S+D  SKAGIFGNMQ +YETV+ AQ VVQVEAVRVQ
Sbjct: 38  YKSKNGYRSLRVNGLFGGGNKDNNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRVQ 97

Query: 103 KELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSV 162
           KELAAAEFDGYC GEL+KVTLSGNQQPIRT+ITEAAMELG EKLS LVTEAY+DAH KSV
Sbjct: 98  KELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKSV 157

Query: 163 QAMKQRMSDLAQSLGMPQGLSEGLK 188
            AMK+RMSDLAQSLGMP GLSEG+K
Sbjct: 158 VAMKERMSDLAQSLGMPPGLSEGMK 182

[Close]

BLAST of IVF0026560 vs. ExPASy Swiss-Prot
Match: Q9M098 (Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g30620 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.7e-52
Identity = 112/140 (80.00%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 48  NNRSLCVYGLFGGKKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAA 107
           NNRSL V GLFGG K + K +D  SKAGI GNMQ LYETV+ AQ VVQVEAVRVQKELA 
Sbjct: 43  NNRSLRVNGLFGGGKKDNK-EDGQSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAV 102

Query: 108 AEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQ 167
           AEFDGYC+GEL+KVTLSGNQQPIRT+IT+AAMELG EKLSLLVTEAY+DAH KSV AMK+
Sbjct: 103 AEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEKLSLLVTEAYKDAHSKSVLAMKE 162

Query: 168 RMSDLAQSLGMPQGLSEGLK 188
           RMSDLAQSLGMP GL +GLK
Sbjct: 163 RMSDLAQSLGMPPGL-DGLK 180

[Close]

BLAST of IVF0026560 vs. ExPASy Swiss-Prot
Match: Q5N376 (Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=syc1054_d PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.0e-14
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 78  GNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEA 137
           G M++L +  + AQ+ VQ  A +VQ++L   E +G  +G L+KV +SGNQ+P+R EI   
Sbjct: 11  GKMKELADAFKKAQQ-VQEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPE 70

Query: 138 AMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180
           A+  G E LS LV  A +DA+QKS  AMK++M  L   LG+P
Sbjct: 71  ALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111

[Close]

BLAST of IVF0026560 vs. ExPASy Swiss-Prot
Match: Q8GMT0 (Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=Synpcc7942_0464 PE=3 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 5.0e-14
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 78  GNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEA 137
           G M++L +  + AQ+ VQ  A +VQ++L   E +G  +G L+KV +SGNQ+P+R EI   
Sbjct: 11  GKMKELADAFKKAQQ-VQEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPE 70

Query: 138 AMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180
           A+  G E LS LV  A +DA+QKS  AMK++M  L   LG+P
Sbjct: 71  ALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111

[Close]

BLAST of IVF0026560 vs. ExPASy Swiss-Prot
Match: B7K422 (Nucleoid-associated protein PCC8801_2554 OS=Rippkaea orientalis (strain PCC 8801) OX=41431 GN=PCC8801_2554 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.2e-13
Identity = 41/102 (40.20%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 78  GNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEA 137
           G +++L E    AQ+ VQ  A ++Q+EL   E +G+ EG+L+KV +SGNQ+P    I   
Sbjct: 12  GKIKELQEAFAKAQQ-VQAGAQQLQQELEQMEIEGFSEGKLVKVIMSGNQEPRSVTILPE 71

Query: 138 AMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180
           A+E G ++LS LVT+A +DA+ +S + M+ +M +L   L +P
Sbjct: 72  ALEKGADELSQLVTDAMKDAYTQSTETMRTKMEELTSGLNLP 112

[Close]

BLAST of IVF0026560 vs. ExPASy TrEMBL
Match: A0A5A7SUZ8 (Nucleoid-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00540 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.4e-96
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60
           MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120
           KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK
Sbjct: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120

Query: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQ 180
           VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQ
Sbjct: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQ 180

Query: 181 GLSEGLK 188
           GLSEGLK
Sbjct: 181 GLSEGLK 187

[Close]

BLAST of IVF0026560 vs. ExPASy TrEMBL
Match: A0A1S3B9T2 (nucleoid-associated protein At2g24020, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487347 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.4e-96
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60
           MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120
           KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK
Sbjct: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120

Query: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQ 180
           VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQ
Sbjct: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQ 180

Query: 181 GLSEGLK 188
           GLSEGLK
Sbjct: 181 GLSEGLK 187

[Close]

BLAST of IVF0026560 vs. ExPASy TrEMBL
Match: A0A0A0LWF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256760 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.3e-94
Identity = 184/187 (98.40%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 1   MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60
           MASTISLSAQLPNLRGISD KKRSNLN MSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120
           KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK
Sbjct: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120

Query: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQ 180
           VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSV AMKQRMSDLAQSLGMPQ
Sbjct: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMPQ 180

Query: 181 GLSEGLK 188
           GLSEGLK
Sbjct: 181 GLSEGLK 187

[Close]

BLAST of IVF0026560 vs. ExPASy TrEMBL
Match: A0A6J1HN29 (nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465126 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 8.4e-89
Identity = 174/188 (92.55%), Postives = 182/188 (96.81%), Query Frame = 0


Query: 1   MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60
           MASTIS+SAQ+PNLRGISD KKRSNLN MS I+GTR+SPYGPWKVEKNNRSLCV GLFGG
Sbjct: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYGPWKVEKNNRSLCVCGLFGG 60

Query: 61  KKD-EEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KK+ EEKSDDAPSKAGIFGNMQKLYETVRTAQ+VVQVEAVRVQKELA AEFDGYCEGELI
Sbjct: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQP+RTEITEAAM+LGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLSEGLK 188
           QGLSEGLK
Sbjct: 181 QGLSEGLK 188

[Close]

BLAST of IVF0026560 vs. ExPASy TrEMBL
Match: A0A6J1EW88 (nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438476 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 8.4e-89
Identity = 174/188 (92.55%), Postives = 182/188 (96.81%), Query Frame = 0


Query: 1   MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60
           MASTIS+SAQ+PNLRGISD KKRSNLN MS I+GTR+SPYGPWKVEKNNRSLCV GLFGG
Sbjct: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYGPWKVEKNNRSLCVCGLFGG 60

Query: 61  KKD-EEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KK+ EEKSDDAPSKAGIFGNMQKLYETVRTAQ+VVQVEAVRVQKELA AEFDGYCEGELI
Sbjct: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQP+RTEITEAAM+LGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLSEGLK 188
           QGLSEGLK
Sbjct: 181 QGLSEGLK 188

[Close]

BLAST of IVF0026560 vs. NCBI nr
Match: XP_008443852.1 (PREDICTED: nucleoid-associated protein At2g24020, chloroplastic-like [Cucumis melo] >KAA0035094.1 nucleoid-associated protein [Cucumis melo var. makuwa] >TYJ95984.1 nucleoid-associated protein [Cucumis melo var. makuwa])

HSP 1 Score: 362 bits (930), Expect = 4.21e-126
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60
           MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120
           KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK
Sbjct: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120

Query: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQ 180
           VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQ
Sbjct: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQ 180

Query: 181 GLSEGLK 187
           GLSEGLK
Sbjct: 181 GLSEGLK 187

[Close]

BLAST of IVF0026560 vs. NCBI nr
Match: XP_004146679.1 (nucleoid-associated protein At2g24020, chloroplastic [Cucumis sativus] >KGN65167.1 hypothetical protein Csa_019766 [Cucumis sativus])

HSP 1 Score: 356 bits (913), Expect = 1.64e-123
Identity = 184/187 (98.40%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 1   MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60
           MASTISLSAQLPNLRGISD KKRSNLN MSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120
           KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK
Sbjct: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120

Query: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQ 180
           VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSV AMKQRMSDLAQSLGMPQ
Sbjct: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMPQ 180

Query: 181 GLSEGLK 187
           GLSEGLK
Sbjct: 181 GLSEGLK 187

[Close]

BLAST of IVF0026560 vs. NCBI nr
Match: XP_038879413.1 (nucleoid-associated protein At4g30620, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 345 bits (886), Expect = 2.23e-119
Identity = 178/188 (94.68%), Postives = 184/188 (97.87%), Query Frame = 0


Query: 1   MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60
           MASTISLSAQLPNLRG+SD KKRSNLN +SNI+G R+SPYGPWKVEK+NRSLCVYGLFGG
Sbjct: 1   MASTISLSAQLPNLRGMSDFKKRSNLNSVSNIIGVRISPYGPWKVEKHNRSLCVYGLFGG 60

Query: 61  KKD-EEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KKD EEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKDNEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQP+RTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLSEGLK 187
           QGLSEGLK
Sbjct: 181 QGLSEGLK 188

[Close]

BLAST of IVF0026560 vs. NCBI nr
Match: XP_038879412.1 (nucleoid-associated protein At4g30620, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 339 bits (869), Expect = 1.07e-116
Identity = 178/194 (91.75%), Postives = 184/194 (94.85%), Query Frame = 0


Query: 1   MASTISLSAQLPNLRGISDLKKRS------NLNLMSNIVGTRLSPYGPWKVEKNNRSLCV 60
           MASTISLSAQLPNLRG+SD KKRS      NLN +SNI+G R+SPYGPWKVEK+NRSLCV
Sbjct: 1   MASTISLSAQLPNLRGMSDFKKRSCMPLTGNLNSVSNIIGVRISPYGPWKVEKHNRSLCV 60

Query: 61  YGLFGGKKD-EEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGY 120
           YGLFGGKKD EEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGY
Sbjct: 61  YGLFGGKKDNEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGY 120

Query: 121 CEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLA 180
           CEGELIKVTLSGNQQP+RTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLA
Sbjct: 121 CEGELIKVTLSGNQQPLRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLA 180

Query: 181 QSLGMPQGLSEGLK 187
           QSLGMPQGLSEGLK
Sbjct: 181 QSLGMPQGLSEGLK 194

[Close]

BLAST of IVF0026560 vs. NCBI nr
Match: XP_022932159.1 (nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_022965200.1 nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 337 bits (865), Expect = 3.54e-116
Identity = 174/188 (92.55%), Postives = 182/188 (96.81%), Query Frame = 0


Query: 1   MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60
           MASTIS+SAQ+PNLRGISD KKRSNLN MS I+GTR+SPYGPWKVEKNNRSLCV GLFGG
Sbjct: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYGPWKVEKNNRSLCVCGLFGG 60

Query: 61  KKD-EEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KK+ EEKSDDAPSKAGIFGNMQKLYETVRTAQ+VVQVEAVRVQKELA AEFDGYCEGELI
Sbjct: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQP+RTEITEAAM+LGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLSEGLK 187
           QGLSEGLK
Sbjct: 181 QGLSEGLK 188

[Close]

BLAST of IVF0026560 vs. TAIR 10
Match: AT2G24020.1 (Uncharacterised BCR, YbaB family COG0718 )

HSP 1 Score: 212.6 bits (540), Expect = 2.7e-55
Identity = 112/145 (77.24%), Postives = 123/145 (84.83%), Query Frame = 0


Query: 43  WKVEKNNRSLCVYGLFGGKKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQ 102
           +K +   RSL V GLFGG   +  S+D  SKAGIFGNMQ +YETV+ AQ VVQVEAVRVQ
Sbjct: 38  YKSKNGYRSLRVNGLFGGGNKDNNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRVQ 97

Query: 103 KELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSV 162
           KELAAAEFDGYC GEL+KVTLSGNQQPIRT+ITEAAMELG EKLS LVTEAY+DAH KSV
Sbjct: 98  KELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKSV 157

Query: 163 QAMKQRMSDLAQSLGMPQGLSEGLK 188
            AMK+RMSDLAQSLGMP GLSEG+K
Sbjct: 158 VAMKERMSDLAQSLGMPPGLSEGMK 182

[Close]

BLAST of IVF0026560 vs. TAIR 10
Match: AT2G24020.2 (Uncharacterised BCR, YbaB family COG0718 )

HSP 1 Score: 212.6 bits (540), Expect = 2.7e-55
Identity = 112/145 (77.24%), Postives = 123/145 (84.83%), Query Frame = 0


Query: 43  WKVEKNNRSLCVYGLFGGKKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQ 102
           +K +   RSL V GLFGG   +  S+D  SKAGIFGNMQ +YETV+ AQ VVQVEAVRVQ
Sbjct: 36  YKSKNGYRSLRVNGLFGGGNKDNNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRVQ 95

Query: 103 KELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSV 162
           KELAAAEFDGYC GEL+KVTLSGNQQPIRT+ITEAAMELG EKLS LVTEAY+DAH KSV
Sbjct: 96  KELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKSV 155

Query: 163 QAMKQRMSDLAQSLGMPQGLSEGLK 188
            AMK+RMSDLAQSLGMP GLSEG+K
Sbjct: 156 VAMKERMSDLAQSLGMPPGLSEGMK 180

[Close]

BLAST of IVF0026560 vs. TAIR 10
Match: AT4G30620.1 (Uncharacterised BCR, YbaB family COG0718 )

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-53
Identity = 112/140 (80.00%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 48  NNRSLCVYGLFGGKKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAA 107
           NNRSL V GLFGG K + K +D  SKAGI GNMQ LYETV+ AQ VVQVEAVRVQKELA 
Sbjct: 43  NNRSLRVNGLFGGGKKDNK-EDGQSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAV 102

Query: 108 AEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQ 167
           AEFDGYC+GEL+KVTLSGNQQPIRT+IT+AAMELG EKLSLLVTEAY+DAH KSV AMK+
Sbjct: 103 AEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEKLSLLVTEAYKDAHSKSVLAMKE 162

Query: 168 RMSDLAQSLGMPQGLSEGLK 188
           RMSDLAQSLGMP GL +GLK
Sbjct: 163 RMSDLAQSLGMPPGL-DGLK 180

The following BLAST results are available for this feature:

BLAST of IVF0026560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82230	3.8e-54	77.24	Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
Q9M098	2.7e-52	80.00	Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
Q5N376	5.0e-14	45.10	Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / ...	[more]
Q8GMT0	5.0e-14	45.10	Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain P...	[more]
B7K422	4.2e-13	40.20	Nucleoid-associated protein PCC8801_2554 OS=Rippkaea orientalis (strain PCC 8801...	[more]

BLAST of IVF0026560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SUZ8	2.4e-96	100.00	Nucleoid-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3B9T2	2.4e-96	100.00	nucleoid-associated protein At2g24020, chloroplastic-like OS=Cucumis melo OX=365...	[more]
A0A0A0LWF8	2.3e-94	98.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256760 PE=4 SV=1	[more]
A0A6J1HN29	8.4e-89	92.55	nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 OS=Cucurbit...	[more]
A0A6J1EW88	8.4e-89	92.55	nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 OS=Cucurbit...	[more]

BLAST of IVF0026560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443852.1	4.21e-126	100.00	PREDICTED: nucleoid-associated protein At2g24020, chloroplastic-like [Cucumis me...	[more]
XP_004146679.1	1.64e-123	98.40	nucleoid-associated protein At2g24020, chloroplastic [Cucumis sativus] >KGN65167...	[more]
XP_038879413.1	2.23e-119	94.68	nucleoid-associated protein At4g30620, chloroplastic isoform X2 [Benincasa hispi...	[more]
XP_038879412.1	1.07e-116	91.75	nucleoid-associated protein At4g30620, chloroplastic isoform X1 [Benincasa hispi...	[more]
XP_022932159.1	3.54e-116	92.55	nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 [Cucurbita ...	[more]

BLAST of IVF0026560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24020.1	2.7e-55	77.24	Uncharacterised BCR, YbaB family COG0718	[more]
AT2G24020.2	2.7e-55	77.24	Uncharacterised BCR, YbaB family COG0718	[more]
AT4G30620.1	1.9e-53	80.00	Uncharacterised BCR, YbaB family COG0718	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036894	Nucleoid-associated protein YbaB-like domain superfamily	GENE3D	3.30.1310.10		coord: 76..184 e-value: 1.8E-31 score: 110.4
IPR036894	Nucleoid-associated protein YbaB-like domain superfamily	SUPERFAMILY	82607	YbaB-like	coord: 92..180
IPR004401	Nucleoid-associated protein YbaB/EbfC family	PFAM	PF02575	YbaB_DNA_bd	coord: 91..175 e-value: 6.7E-17 score: 61.5
IPR004401	Nucleoid-associated protein YbaB/EbfC family	PANTHER	PTHR33449	NUCLEOID-ASSOCIATED PROTEIN YBAB	coord: 3..187
None	No IPR available	PANTHER	PTHR33449:SF6	SUBFAMILY NOT NAMED	coord: 3..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026560.1	IVF0026560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding