IVF0026549 (gene) Melon (IVF77) v1

Overview


Name	IVF0026549
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribonuclease H
Location	chr01: 15781441 .. 15782504 (+)
RNA-Seq Expression	IVF0026549
Synteny	IVF0026549

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGTTGAAATACCAGGTCCTTTTGCTTATAAGGATAACCATGTCGTTCCATGGAAGTATGAATGTCAGTTCATCACGGACAATGTCGTTTCTGCAACAATCGGAGGAATAACTCGTAGTGGAAGGTGTTATACACCAGATAATTTAAAAGATGTCTCAAAAGAGGATGAAGTTCGACGACGTAAAGGCAAAGCTATAGAAATGGCAGGTGAAGATGATCTAAATGATCTAAGCAAGGTTTTTACTGAGAAGACCACATTAGTTGAGAAAGAGACAGATCATGAAGTTGTCTCCAAAGAGGAAGCCTGTGAATTTTTGAAATTAATTAAGCAGAGTGAGTATATAAAGTGATTGAACAATTACATCGTACCCCAGCTCGTATATCGATGTTGTCACTATTCATGTGCTCTGAATCGCACCGTAAGGTTTTGTTGGATATCTTAAATAGAGCCTATGTAGGGCATGATATTTCAGTGAATGCACTTAGTGAAATCATGGAAAATATAACTGCTACAAATTGCATTTTCTTTACAGATAAAGAAATTCCCCCTAAAGGTACTGGACATACTAAGACATTGCACATATCCGTGAAGTGTAAGGACCATCATGTGGCGAGGGTCCTGGTAGATAATGGTTCATCTTTAAATATAATATCGAGATCCACGTTGATGAAACTCCTCATAGATCCATCGTACCTAAGACCAAGTACTATGGTTGTAACAGCCTTTGACGGTGCACGTAGAGAAGTAATCGGGGATATAGATATCCCATTAAAAATTGGGCCTTCCACTTTCAACGTTTCATTCCAAGTGATGGATGTAAATTCCTCATACAATTTTCTACTGGGACAACCTTGGATTCATTCAGCAGGGGCAGTCCCATCTTCACTGCACCAAAGGTTGAAATTTAGTATAGAAGGTGGTCAAGCTATTGTCTATGGAGAAGACGACATGTTTGTAACGAAAACATCGGCACTTCCTTATGTTGAAGCAATAGAGGAAGCTCTAGAATGTTCTTATAGATCGTTTGAAATTGCTAATGCTACTATCTTTCCAACATAA

mRNA sequence

ATGACAGTTGAAATACCAGGTCCTTTTGCTTATAAGGATAACCATGTCGTTCCATGGAAGTATGAATGTCAGTTCATCACGGACAATGTCGTTTCTGCAACAATCGGAGGAATAACTCGTAGTGGAAGGTGTTATACACCAGATAATTTAAAAGATGTCTCAAAAGAGGATGAAGTTCGACGACGTAAAGGCAAAGCTATAGAAATGGCAGATAAAGAAATTCCCCCTAAAGGTACTGGACATACTAAGACATTGCACATATCCGTGAAGTGTAAGGACCATCATGTGGCGAGGGTCCTGGTAGATAATGGTTCATCTTTAAATATAATATCGAGATCCACGTTGATGAAACTCCTCATAGATCCATCGTACCTAAGACCAAGTACTATGGTTGTAACAGCCTTTGACGGTGCACGTAGAGAAGTAATCGGGGATATAGATATCCCATTAAAAATTGGGCCTTCCACTTTCAACGTTTCATTCCAAGTGATGGATGTAAATTCCTCATACAATTTTCTACTGGGACAACCTTGGATTCATTCAGCAGGGGCAGTCCCATCTTCACTGCACCAAAGGTTGAAATTTAGTATAGAAGGTGGTCAAGCTATTGTCTATGGAGAAGACGACATGTTTGTAACGAAAACATCGGCACTTCCTTATGTTGAAGCAATAGAGGAAGCTCTAGAATGTTCTTATAGATCGTTTGAAATTGCTAATGCTACTATCTTTCCAACATAA

Coding sequence (CDS)

ATGACAGTTGAAATACCAGGTCCTTTTGCTTATAAGGATAACCATGTCGTTCCATGGAAGTATGAATGTCAGTTCATCACGGACAATGTCGTTTCTGCAACAATCGGAGGAATAACTCGTAGTGGAAGGTGTTATACACCAGATAATTTAAAAGATGTCTCAAAAGAGGATGAAGTTCGACGACGTAAAGGCAAAGCTATAGAAATGGCAGATAAAGAAATTCCCCCTAAAGGTACTGGACATACTAAGACATTGCACATATCCGTGAAGTGTAAGGACCATCATGTGGCGAGGGTCCTGGTAGATAATGGTTCATCTTTAAATATAATATCGAGATCCACGTTGATGAAACTCCTCATAGATCCATCGTACCTAAGACCAAGTACTATGGTTGTAACAGCCTTTGACGGTGCACGTAGAGAAGTAATCGGGGATATAGATATCCCATTAAAAATTGGGCCTTCCACTTTCAACGTTTCATTCCAAGTGATGGATGTAAATTCCTCATACAATTTTCTACTGGGACAACCTTGGATTCATTCAGCAGGGGCAGTCCCATCTTCACTGCACCAAAGGTTGAAATTTAGTATAGAAGGTGGTCAAGCTATTGTCTATGGAGAAGACGACATGTTTGTAACGAAAACATCGGCACTTCCTTATGTTGAAGCAATAGAGGAAGCTCTAGAATGTTCTTATAGATCGTTTGAAATTGCTAATGCTACTATCTTTCCAACATAA

Protein sequence

MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMADKEIPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALECSYRSFEIANATIFPT

Homology

[Close]

BLAST of IVF0026549 vs. ExPASy TrEMBL
Match: A0A5A7U7X5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001520 PE=4 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 2.2e-121
Identity = 228/271 (84.13%), Postives = 229/271 (84.50%), Query Frame = 0


Query: 1   MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVR 60
           MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVR
Sbjct: 1   MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVR 60

Query: 61  RRKGKAIEMA------------------------------------------DKEIPPKG 120
           RRKGKAIEMA                                          +KEIPPKG
Sbjct: 61  RRKGKAIEMAGEDDLNDLSKVFTEKTTLVEKETDHEVVSKEEACEFLKLIKQNKEIPPKG 120

Query: 121 TGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGA 180
           TGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGA
Sbjct: 121 TGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGA 180

Query: 181 RREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIE 230
           RREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIE
Sbjct: 181 RREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIE 240

[Close]

BLAST of IVF0026549 vs. ExPASy TrEMBL
Match: A0A5D3C587 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00280 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 2.7e-119
Identity = 214/237 (90.30%), Postives = 223/237 (94.09%), Query Frame = 0


Query: 8   PFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRRRKGKAI 67
           PFAYKDNHVVPWKYECQFITDNVVSATIG IT SGRCYTPDNLKDVSKEDEVRRRKGKAI
Sbjct: 494 PFAYKDNHVVPWKYECQFITDNVVSATIGEITHSGRCYTPDNLKDVSKEDEVRRRKGKAI 553

Query: 68  EMADKEIPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRP 127
           EMAD+EIPP+GTGHTK L+ISVKCKDHHVARVLVDNGSSLNI+SRSTLMKL IDP YLRP
Sbjct: 554 EMADEEIPPEGTGHTKALYISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLHIDPPYLRP 613

Query: 128 STMVVTAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPS 187
           S MVV AFD ARREVIGDIDIPLKIGPSTFNVS QV+DVNSSY+ LLG+PWIHSAG VPS
Sbjct: 614 SIMVVRAFDDARREVIGDIDIPLKIGPSTFNVSIQVIDVNSSYSCLLGRPWIHSAGTVPS 673

Query: 188 SLHQRLKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALECSYRSFEIANATIFP 245
            LHQRLKFS+EGGQAIVYGED+MFVTKTS LPYVEA EEALECSYRSFEIANATIFP
Sbjct: 674 LLHQRLKFSVEGGQAIVYGEDNMFVTKTSTLPYVEATEEALECSYRSFEIANATIFP 730

[Close]

BLAST of IVF0026549 vs. ExPASy TrEMBL
Match: A0A5A7TI68 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00990 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 1.1e-117
Identity = 224/291 (76.98%), Postives = 230/291 (79.04%), Query Frame = 0


Query: 1   MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVR 60
           MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIG ITRSGRCYTPDNLKDV KEDEVR
Sbjct: 61  MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGEITRSGRCYTPDNLKDVFKEDEVR 120

Query: 61  RRKGKAIEMA-----------------------------------------------DKE 120
           RRKGKAIEMA                                               D+E
Sbjct: 121 RRKGKAIEMAGEDDLNDLSKVLLDILNRAHVGHDISVVDALSEIVENITATHCISFTDEE 180

Query: 121 IPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVT 180
           IPPKGTGHTK LHISVKCKDHHVARVLVDNGSSLNI+SRSTLMKL IDPSYLR S MVV 
Sbjct: 181 IPPKGTGHTKALHISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLRSSIMVVR 240

Query: 181 AFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRL 240
           AFDGARREVI DIDIPLKIGPSTFNVS QVMDVNSSY+ LLG+PWIHSAGAVPS LHQRL
Sbjct: 241 AFDGARREVIRDIDIPLKIGPSTFNVSVQVMDVNSSYSCLLGRPWIHSAGAVPSLLHQRL 300

Query: 241 KFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALECSYRSFEIANATIFP 245
           KFS+EGGQAIVYGED+MFVTK S LPYVEA EEALECSYRSFEIANATIFP
Sbjct: 301 KFSVEGGQAIVYGEDNMFVTKISTLPYVEATEEALECSYRSFEIANATIFP 351

[Close]

BLAST of IVF0026549 vs. ExPASy TrEMBL
Match: A0A5A7V681 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00760 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.8e-115
Identity = 228/353 (64.59%), Postives = 237/353 (67.14%), Query Frame = 0


Query: 1   MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVR 60
           MTVEIPGPFAYKDNH VPWKYECQFITDNVVSAT+GGITRSGRCYTPDNLKDVSKEDEVR
Sbjct: 628 MTVEIPGPFAYKDNHAVPWKYECQFITDNVVSATVGGITRSGRCYTPDNLKDVSKEDEVR 687

Query: 61  RRKGKAIEMA-------------------------------------------------- 120
           RRKGKAIEMA                                                  
Sbjct: 688 RRKGKAIEMAGEDDLNDLSKVFTKKNTLVEKETDHEVVSKEEACEFLKLIKQSEYKVIEQ 747

Query: 121 ----------------------------------------------------------DK 180
                                                                     D+
Sbjct: 748 LHRTPARISMLSLFMYSEPHRKVLLDILNRAHVGHDISVNALSEIVENIIATNCISFTDE 807

Query: 181 EIPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVV 240
           EIPP+GTGHTK LHISVKCKDHHVARVLVDNGSSLNI+SRSTLMKL IDPSYLRPSTMVV
Sbjct: 808 EIPPEGTGHTKALHISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLRPSTMVV 867

Query: 241 TAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQR 246
            AFDGARREVIGDIDIPLKIGPSTFNVSFQVMD+NSSY+ LLG+PWIHSAGAVPSSLHQR
Sbjct: 868 RAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDINSSYSCLLGRPWIHSAGAVPSSLHQR 927

[Close]

BLAST of IVF0026549 vs. ExPASy TrEMBL
Match: A0A5A7TUT4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001540 PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 7.5e-114
Identity = 225/353 (63.74%), Postives = 235/353 (66.57%), Query Frame = 0


Query: 1   MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVR 60
           MTVEIPGPFAYKDNH VPWKYECQFITDNVVSAT+GGITRSGRCYT DNLKDVSKEDEVR
Sbjct: 382 MTVEIPGPFAYKDNHAVPWKYECQFITDNVVSATVGGITRSGRCYTLDNLKDVSKEDEVR 441

Query: 61  RRKGKAIEMA-------------------------------------------------- 120
           RRKGKAIEMA                                                  
Sbjct: 442 RRKGKAIEMACEDDLNDLSKVFTEKNTLVEKETDHEVVSKEEACEFLKLIKQSEYKVIEQ 501

Query: 121 ----------------------------------------------------------DK 180
                                                                     D+
Sbjct: 502 LHRTSARISMLSLFMYSEPHRKVLLDILNRAHVGHDISVNALSEIVENITATNCISFTDE 561

Query: 181 EIPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVV 240
           EIPP+GTGHTK LHISVKCKDHHVARVLVDNGSSLNI+SRSTLMKL IDPSYLRPSTMVV
Sbjct: 562 EIPPEGTGHTKALHISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLRPSTMVV 621

Query: 241 TAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQR 246
            AFDGARREVI DIDIPLKIGPSTFN+SFQVMD+NSSY+ LLG+PWIHS GAVPSSLHQR
Sbjct: 622 RAFDGARREVIEDIDIPLKIGPSTFNISFQVMDINSSYSCLLGRPWIHSVGAVPSSLHQR 681

[Close]

BLAST of IVF0026549 vs. NCBI nr
Match: KAA0043020.1 (uncharacterized protein E6C27_scaffold75G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 432 bits (1111), Expect = 1.91e-146
Identity = 224/291 (76.98%), Postives = 230/291 (79.04%), Query Frame = 0


Query: 1   MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVR 60
           MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIG ITRSGRCYTPDNLKDV KEDEVR
Sbjct: 61  MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGEITRSGRCYTPDNLKDVFKEDEVR 120

Query: 61  RRKGKAIEMA-----------------------------------------------DKE 120
           RRKGKAIEMA                                               D+E
Sbjct: 121 RRKGKAIEMAGEDDLNDLSKVLLDILNRAHVGHDISVVDALSEIVENITATHCISFTDEE 180

Query: 121 IPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVT 180
           IPPKGTGHTK LHISVKCKDHHVARVLVDNGSSLNI+SRSTLMKL IDPSYLR S MVV 
Sbjct: 181 IPPKGTGHTKALHISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLRSSIMVVR 240

Query: 181 AFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRL 240
           AFDGARREVI DIDIPLKIGPSTFNVS QVMDVNSSY+ LLG+PWIHSAGAVPS LHQRL
Sbjct: 241 AFDGARREVIRDIDIPLKIGPSTFNVSVQVMDVNSSYSCLLGRPWIHSAGAVPSLLHQRL 300

Query: 241 KFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALECSYRSFEIANATIFP 244
           KFS+EGGQAIVYGED+MFVTK S LPYVEA EEALECSYRSFEIANATIFP
Sbjct: 301 KFSVEGGQAIVYGEDNMFVTKISTLPYVEATEEALECSYRSFEIANATIFP 351

[Close]

BLAST of IVF0026549 vs. NCBI nr
Match: TYK06500.1 (uncharacterized protein E5676_scaffold70G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 438 bits (1127), Expect = 8.37e-145
Identity = 215/243 (88.48%), Postives = 226/243 (93.00%), Query Frame = 0


Query: 2   TVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVRR 61
           ++E   PFAYKDNHVVPWKYECQFITDNVVSATIG IT SGRCYTPDNLKDVSKEDEVRR
Sbjct: 488 SIEDCCPFAYKDNHVVPWKYECQFITDNVVSATIGEITHSGRCYTPDNLKDVSKEDEVRR 547

Query: 62  RKGKAIEMADKEIPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLID 121
           RKGKAIEMAD+EIPP+GTGHTK L+ISVKCKDHHVARVLVDNGSSLNI+SRSTLMKL ID
Sbjct: 548 RKGKAIEMADEEIPPEGTGHTKALYISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLHID 607

Query: 122 PSYLRPSTMVVTAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHS 181
           P YLRPS MVV AFD ARREVIGDIDIPLKIGPSTFNVS QV+DVNSSY+ LLG+PWIHS
Sbjct: 608 PPYLRPSIMVVRAFDDARREVIGDIDIPLKIGPSTFNVSIQVIDVNSSYSCLLGRPWIHS 667

Query: 182 AGAVPSSLHQRLKFSIEGGQAIVYGEDDMFVTKTSALPYVEAIEEALECSYRSFEIANAT 241
           AG VPS LHQRLKFS+EGGQAIVYGED+MFVTKTS LPYVEA EEALECSYRSFEIANAT
Sbjct: 668 AGTVPSLLHQRLKFSVEGGQAIVYGEDNMFVTKTSTLPYVEATEEALECSYRSFEIANAT 727

Query: 242 IFP 244
           IFP
Sbjct: 728 IFP 730

[Close]

BLAST of IVF0026549 vs. NCBI nr
Match: KAA0049671.1 (uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa] >TYK12201.1 uncharacterized protein E5676_scaffold106G001520 [Cucumis melo var. makuwa])

HSP 1 Score: 444 bits (1141), Expect = 1.45e-144
Identity = 228/271 (84.13%), Postives = 229/271 (84.50%), Query Frame = 0


Query: 1   MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVR 60
           MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVR
Sbjct: 1   MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVR 60

Query: 61  RRKGKAIEMA------------------------------------------DKEIPPKG 120
           RRKGKAIEMA                                          +KEIPPKG
Sbjct: 61  RRKGKAIEMAGEDDLNDLSKVFTEKTTLVEKETDHEVVSKEEACEFLKLIKQNKEIPPKG 120

Query: 121 TGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGA 180
           TGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGA
Sbjct: 121 TGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVVTAFDGA 180

Query: 181 RREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIE 229
           RREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIE
Sbjct: 181 RREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQRLKFSIE 240

[Close]

BLAST of IVF0026549 vs. NCBI nr
Match: KAA0046608.1 (uncharacterized protein E6C27_scaffold114G001540 [Cucumis melo var. makuwa])

HSP 1 Score: 419 bits (1078), Expect = 1.48e-139
Identity = 225/353 (63.74%), Postives = 235/353 (66.57%), Query Frame = 0


Query: 1   MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVR 60
           MTVEIPGPFAYKDNH VPWKYECQFITDNVVSAT+GGITRSGRCYT DNLKDVSKEDEVR
Sbjct: 382 MTVEIPGPFAYKDNHAVPWKYECQFITDNVVSATVGGITRSGRCYTLDNLKDVSKEDEVR 441

Query: 61  RRKGKAIEMA-------------------------------------------------- 120
           RRKGKAIEMA                                                  
Sbjct: 442 RRKGKAIEMACEDDLNDLSKVFTEKNTLVEKETDHEVVSKEEACEFLKLIKQSEYKVIEQ 501

Query: 121 ----------------------------------------------------------DK 180
                                                                     D+
Sbjct: 502 LHRTSARISMLSLFMYSEPHRKVLLDILNRAHVGHDISVNALSEIVENITATNCISFTDE 561

Query: 181 EIPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVV 240
           EIPP+GTGHTK LHISVKCKDHHVARVLVDNGSSLNI+SRSTLMKL IDPSYLRPSTMVV
Sbjct: 562 EIPPEGTGHTKALHISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLRPSTMVV 621

Query: 241 TAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQR 245
            AFDGARREVI DIDIPLKIGPSTFN+SFQVMD+NSSY+ LLG+PWIHS GAVPSSLHQR
Sbjct: 622 RAFDGARREVIEDIDIPLKIGPSTFNISFQVMDINSSYSCLLGRPWIHSVGAVPSSLHQR 681

[Close]

BLAST of IVF0026549 vs. NCBI nr
Match: KAA0061241.1 (uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 425 bits (1092), Expect = 1.02e-137
Identity = 228/353 (64.59%), Postives = 237/353 (67.14%), Query Frame = 0


Query: 1   MTVEIPGPFAYKDNHVVPWKYECQFITDNVVSATIGGITRSGRCYTPDNLKDVSKEDEVR 60
           MTVEIPGPFAYKDNH VPWKYECQFITDNVVSAT+GGITRSGRCYTPDNLKDVSKEDEVR
Sbjct: 628 MTVEIPGPFAYKDNHAVPWKYECQFITDNVVSATVGGITRSGRCYTPDNLKDVSKEDEVR 687

Query: 61  RRKGKAIEMA-------------------------------------------------- 120
           RRKGKAIEMA                                                  
Sbjct: 688 RRKGKAIEMAGEDDLNDLSKVFTKKNTLVEKETDHEVVSKEEACEFLKLIKQSEYKVIEQ 747

Query: 121 ----------------------------------------------------------DK 180
                                                                     D+
Sbjct: 748 LHRTPARISMLSLFMYSEPHRKVLLDILNRAHVGHDISVNALSEIVENIIATNCISFTDE 807

Query: 181 EIPPKGTGHTKTLHISVKCKDHHVARVLVDNGSSLNIISRSTLMKLLIDPSYLRPSTMVV 240
           EIPP+GTGHTK LHISVKCKDHHVARVLVDNGSSLNI+SRSTLMKL IDPSYLRPSTMVV
Sbjct: 808 EIPPEGTGHTKALHISVKCKDHHVARVLVDNGSSLNIMSRSTLMKLPIDPSYLRPSTMVV 867

Query: 241 TAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYNFLLGQPWIHSAGAVPSSLHQR 245
            AFDGARREVIGDIDIPLKIGPSTFNVSFQVMD+NSSY+ LLG+PWIHSAGAVPSSLHQR
Sbjct: 868 RAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDINSSYSCLLGRPWIHSAGAVPSSLHQR 927

The following BLAST results are available for this feature:

BLAST of IVF0026549 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026549 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U7X5	2.2e-121	84.13	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00152...	[more]
A0A5D3C587	2.7e-119	90.30	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TI68	1.1e-117	76.98	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V681	1.8e-115	64.59	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TUT4	7.5e-114	63.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0026549 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043020.1	1.91e-146	76.98	uncharacterized protein E6C27_scaffold75G00990 [Cucumis melo var. makuwa]	[more]
TYK06500.1	8.37e-145	88.48	uncharacterized protein E5676_scaffold70G00280 [Cucumis melo var. makuwa]	[more]
KAA0049671.1	1.45e-144	84.13	uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa] >TYK12...	[more]
KAA0046608.1	1.48e-139	63.74	uncharacterized protein E6C27_scaffold114G001540 [Cucumis melo var. makuwa]	[more]
KAA0061241.1	1.02e-137	64.59	uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0026549 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13650	Asp_protease_2	coord: 89..178 e-value: 5.4E-6 score: 27.0
None	No IPR available	PANTHER	PTHR33240:SF7	GAG-PRO-LIKE PROTEIN	coord: 67..238
None	No IPR available	PANTHER	PTHR33240	OS08G0508500 PROTEIN	coord: 67..238
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 89..180 e-value: 2.0916E-18 score: 75.4508
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 65..201 e-value: 1.9E-17 score: 65.2
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 94..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026549.1	IVF0026549.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity